BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21880.2 Length=1574 Score E Sequences producing significant alignments: (Bits) Value Ahg472424 jgi|Araly1|472424|fgenesh2_kg.1__2378__AT1G21880.2 2285 0.0 Ahg316675 jgi|Araly1|316675|fgenesh1_pm.C_scaffold_2001708 811 0.0 > Ahg472424 jgi|Araly1|472424|fgenesh2_kg.1__2378__AT1G21880.2 Length=1495 Score = 2285 bits (1237), Expect = 0.0 Identities = 1380/1449 (95%), Gaps = 9/1449 (1%) Strand=Plus/Plus Query 133 ACTCTCTGTCATTGTCCTGTAAGAGAAATTGAAAACCCTAGGAGATTTTGAATTTCGTAA 192 |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| Sbjct 49 ACTCTCTGTCATTGTCCTCTAAGAGAGATTGAAAACCCTACGAGATTTTGAATTTCGTAA 108 Query 193 AACCCTAAAC-ACAAAAATGAAAATCCCAGAAAAACCCATCTTCTTAATCTTCGTCTCTT 251 |||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 109 AACCCTAAACTACTAAAATGAAAAACCCAGAAAAACCCATCTTCTTCTTCTTCGTCTCTC 168 Query 252 TGATCCTAGCTTCGAGCT-TAACCTTCACAGCGACAGCGAAATCAACAATCGAGCCTTGC 310 | || |||||||||| || | ||||||||| ||||||||||||||||||||||||||| Sbjct 169 TAATTCTAGCTTCGA-CTCTCGTCTTCACAGCTACAGCGAAATCAACAATCGAGCCTTGC 227 Query 311 TCAAGCAACGACACTTGCAACGCTTTACTCGGCTACACACTCTACACCGACCTCAAAGTC 370 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 228 TCAAGCAACGACACTTGCAACTCTTTACTCGGCTACACGCTCTACACCGACCTCAAAGTC 287 Query 371 TCAGAAGTCGCATCTCTCTTCCAAGTAGACCCAATCTCTA-TCCTTTTAGCTAACGCCAT 429 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 288 TCAGAAGTCGCATCTCTCTTCCAAGTAGACCCAATCTC-AGTCCTTTTAGCTAACGCCAT 346 Query 430 CGATATCTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCGAAGCTCTTCCTCAAAAT 489 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 347 CGATATCTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCAAAGCTCTTCCTCAAAAT 406 Query 490 CCCAATCACTTGCTCCTGCGTCGACGGAATCAGAAAATCTGTCTCTACCCATTACAAAAC 549 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 407 CCCAATCACTTGCTCCTGCGTCGACGGAATCAGGAAATCTGTCTCTACCCATTACAAAAC 466 Query 550 CCGACCTTCTGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGGCTTGGTCTCTGC 609 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 467 CCGACCTTCCGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGGTTTGGTCTCTGC 526 Query 610 TGAGCAGATCCAGGAAGCTAACTCGGTGAATGACCCGTCGCTGCTTGATGTTGGGACTAG 669 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 527 TGAGCAGATCCAGGAAGCTAACTCGGTGAATGACCCGTCGTTGCTTGATGTTGGGACGAG 586 Query 670 TCTTGTTATCCCCTTGCCTTGTGCTTGTTTCAATGGCACCGACAATTCTTTGCCGGCTGT 729 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 587 TCTTGTTATCCCCTTGCCTTGCGCTTGTTTCAATGGCACCGACAATTCTTTGCCGGCGGT 646 Query 730 TTATTTGTCGTATGTTGTGAAGGAGATTGATACATTGGTCGGAATCGCGAGGAGGTATTC 789 ||||||||||||||| || | |||||||||||||||||||||||| |||||||||||||| Sbjct 647 TTATTTGTCGTATGTGGTTAGGGAGATTGATACATTGGTCGGAATTGCGAGGAGGTATTC 706 Query 790 GACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGG 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 GACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGG 766 Query 850 AGATATTCTCGCTGTTCCTTTGTCAGCTTGTGCTTCAAAGTTCCCCAGATACGCTTCGGA 909 ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 767 AGATATTCTCGCTGTTCCTTTGTCAGCCTGTGCTTCAAAGTTCCCCAGATATGCATCGGA 826 Query 910 TTTCGGATTGATTGTTCCAAATGGTAGCTATGCTCTAGCTGCAGGTCACTGTGTGCAATG 969 |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| Sbjct 827 TTTCGGATTGATTGTTCCAAATGGTAGCTACGCTTTAGCTGCAGGTCATTGTGTGCAATG 886 Query 970 CAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCCCTAGCCGTCTCTTG 1029 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 887 CAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCTCTAGCCGTCTCTTG 946 Query 1030 CTCAAGTATGCAGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGTGCAGCAGAC 1089 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 TTCAAGTATGCAGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGTGCAGCAGAG 1006 Query 1090 TAGCGCTGGCTGTAATGTTACAACTTGTGATTACAACGGTATAGCCAACGGCACTATCTT 1149 |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1007 TAGCGCTGGCTGTAATGTTACAACCTGTGATTACAATGGTATTGCCAACGGCACTATCTT 1066 Query 1150 AACCATGCTGACCAGGTCTCTTCAACCTCGATGTCCCGGACCTCAACAATTTGCGCCGCT 1209 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1067 GACCATGCTGACCAGGTCTCTTCAACCCCGATGTCCCGGACCTCAACAATTTGCGCCGCT 1126 Query 1210 TCTAGCTCCACCAGATACTGTTCCTAGGGATGTAATGTATGCACCAGCACCTTCACCAGA 1269 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1127 TCTAGCTCCACCGGATACTGTTCCTAAGGATGTAATGTATGCACCAGCACCTTCACCAGA 1186 Query 1270 TTTTGATGGTCCAGGATCCATAGCATCTTCACCAAGATCATCTATGCTTCCTGGTGGTGG 1329 ||||||||||||||||||||||||||||||||||||||||||| |||||||| || || Sbjct 1187 TTTTGATGGTCCAGGATCCATAGCATCTTCACCAAGATCATCTGTGCTTCCTTCAGGCGG 1246 Query 1330 T-AT-CT-TGCCAGGTAATCCCGCTAATGGTCCAGCCGGTAGCATCTCAACCGCCTCTGC 1386 | || | | |||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1247 TGATTCCGTCCCAGGTAACCCCGCTAATGGTCCAGCCGGTAGCATCTCAATCGCCTCTGC 1306 Query 1387 CTCCTCAGTTAGCTACTTCTTTATCACATTTCTCATCTCCATTGCTTCTTTTTCCCTTGC 1446 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1307 CTCCTCAGTTAGCTACTTCATTATCACATTTCTCATCTCCATTGCTTCTTTTTCCCTTGT 1366 Query 1447 TTTGTCATCTTGATTCAACAACAATTGTTTATTTTCCGCGCATTAAAAACTCCTATGTGA 1506 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1367 TTTGTCATCTTGATTCAACAACAATTGTTTATTTTCCGCGCATTGGAAACTCCTATGTGA 1426 Query 1507 AATTCTTGATGAGTAGAACCAAAACATTG-TTATTGATCTCTTTGATAATTTTTGAAGTT 1565 ||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||| Sbjct 1427 AATTCTTGATGAGTAAAACCAAAACATTGGTTTTTGATCTCTTTGATAATATTTGAAGTT 1486 Query 1566 GCATATCTC 1574 ||||||||| Sbjct 1487 GCATATCTC 1495 > Ahg316675 jgi|Araly1|316675|fgenesh1_pm.C_scaffold_2001708 Length=1278 Score = 811 bits (439), Expect = 0.0 Identities = 841/1031 (82%), Gaps = 44/1031 (4%) Strand=Plus/Plus Query 258 TAGCTTCGAGCTTAACCTTC-ACAGCGACAGCGAAATCAACAATCGAGCCTTGCTCAAGC 316 ||||||| ||||| | | || | ||||| |||||||| ||||| ||||||||||| | | Sbjct 41 TAGCTTCAAGCTT-AGCATCAATGGCGACTGCGAAATCCACAATAGAGCCTTGCTCCA-C 98 Query 317 -AACGACACTTGCAACGCTTTACTCGGCTACACACTCTACACCGACCTCAAAGTCTCAGA 375 || |||||||| ||| | || || |||||||| ||||||||||||||||||||| |||| Sbjct 99 TAAAGACACTTGTAACTCATTGCTAGGCTACACGCTCTACACCGACCTCAAAGTCACAGA 158 Query 376 AGTCGCATCTCTCTTCCAAGTAGACCCAATCTCTATCCTTTTAGCTAACGCCATCGATAT 435 |||||| ||||||||||||||||||||| |||| || ||| | ||||| |||| || || Sbjct 159 AGTCGCTTCTCTCTTCCAAGTAGACCCAGTCTCGATGCTTCTCTCTAACTCCATTGACAT 218 Query 436 CTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCGAAGCTCTTCCTCAAAATCCCAAT 495 |||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||| Sbjct 219 CTCTTACCCAGACGTCGAGAACCATGTCCTTCCCGCTAAGCTCTTCCTCAAAATCCCAAT 278 Query 496 CACTTGCTCCTGCGTCGACGGAAT-CAGAAAATCTGTCTCTACCCATTACAAAACCCG-A 553 |||||||||||| ||||||||||| | ||||||| |||| ||||||||||| || || | Sbjct 279 CACTTGCTCCTGTGTCGACGGAATTC-GAAAATCCCTCTCGACCCATTACAAGACTCGTA 337 Query 554 CCTTCTGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGG-CTTGGTCTCTGCTGA 612 | ||| |||| ||||||||||| ||||||||||||||||| || || ||||||| | || Sbjct 338 C-TTCCGACACGCTAGGATCGATCGCTGACTCTGTTTACGGTGGTCT-GGTCTCTCCGGA 395 Query 613 GCAGATCCAGGAAGCTAACTCGGTGAA-TGACC-CGTCGCTGCTTGATGTTGGGACTAGT 670 |||||| |||| || || |||| || ||||| | ||| | || ||||| || || || Sbjct 396 GCAGATTCAGGTCGCGAATTCGGA-AACTGACCTC-TCGGTTCTCGATGTAGGTACAAGG 453 Query 671 CTTGTTATCCCCTTGCCTTGTGCTTGTTTCAATGGCACCGAC-AAT-TCTTTGCCGGCTG 728 ||||| || || |||||||| ||||| |||||||| ||||| ||| |||| ||||| | Sbjct 454 CTTGTGATTCCATTGCCTTGCGCTTGCTTCAATGGTACCGATGAATCTCTT--CCGGC-G 510 Query 729 -TTTATTTGTCGTATGTTGTGAAGGAGATT-GATACATTGG-TCGGAATCGCGAGGAGGT 785 ||||| | || || ||||||| || || | || ||| ||| | |||||||| | ||| | Sbjct 511 CTTTATCTATCTTACGTTGTGAGGG-GAATCGACACAATGGCT-GGAATCGCAAAGAGAT 568 Query 786 AT-TCGACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGT 844 | ||||| ||| |||| ||||| | ||||||||||| ||||||||||||||| | | | Sbjct 569 -TCTCGACCACTGTTACGGATTTAACAAATGTGAATGCGATGGGAGCTCCTGATATCAAT 627 Query 845 TCTGGAGATATTCTCGCTGTTCCTTTG-TCAGCTTGT-GCTTCAAAGTTCCCCAGATACG 902 |||| ||||| |||||||| || ||| | |||||| | |||||| ||||||| ||||| Sbjct 628 CCTGGTGATATCCTCGCTGTCCCATTGCTT-GCTTGTAG-TTCAAATTTCCCCAAATACG 685 Query 903 CTTCGGATTTCGGATTGATTGTTCCAAATGGTAGCTATGCTCT-AGCTGCAGGTCACTGT 961 || |||||| ||||||||| ||||||| || ||||||||||| | | ||||| |||||| Sbjct 686 CTACGGATTACGGATTGATCATTCCAAACGGAAGCTATGCTCTCACC-GCAGGCCACTGT 744 Query 962 GTGCAATGCAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCCCTAGCC 1021 || ||||||||||||| || || ||||||| | ||||||||||||||||||| |||| Sbjct 745 GTACAATGCAGCTGTGTTCTCGGAAGCCGCAGTATGTATTGTGAGCCTGCTTCTTTAGCA 804 Query 1022 GTCTCTTGCTCAAGTATGC-AGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGT 1080 |||||||| || ||||||| | ||||||||||||||| |||||||||| |||||||| | Sbjct 805 GTCTCTTGTTCCAGTATGCGA-TGTAGAAACAGCAACTTCATGCTCGGGAACATCACT-T 862 Query 1081 -GCAGCAGACTAGCGCTGGCTGTAATGTTACAACTTGT-GATTACAACGGTATAGCCAAC 1138 |||||||| |||| | || ||||| |||| |||||| | |||||||||| | || | | Sbjct 863 CGCAGCAGAGTAGCTCGGGTTGTAAACTTACTACTTGTAG-TTACAACGGTTTCGCTAGC 921 Query 1139 GGCACTATCTTAACCATGCTGA-CCAGGTCTCTTCAACCTCGATGTCCC-GGACCTCAAC 1196 ||||||||||| |||| | | | ||| |||||||||||||||||| ||| ||||| |||| Sbjct 922 GGCACTATCTTGACCACGTT-ATCCATGTCTCTTCAACCTCGATG-CCCTGGACCGCAAC 979 Query 1197 AATTTGCGCCGCTTCTAGCTCCACCAGATACTGTTCCTAGGGATGTAATGTATGC-ACCA 1255 |||| || |||||| |||| || || ||||||||||| | ||| | |||||| | ||| Sbjct 980 AATTAGCACCGCTTATAGCCCCGCCTGATACTGTTCCAAAGGAACTGATGTAT-CTACCT 1038 Query 1256 GCACCTTCACC 1266 |||||||||| Sbjct 1039 TCACCTTCACC 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58963699260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5