BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22070.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472441 jgi|Araly1|472441|fgenesh2_kg.1__2395__AT1G22070.1 2599 0.0
Ahg909416 jgi|Araly1|909416|Al_scaffold_0002_2497 701 0.0
> Ahg472441 jgi|Araly1|472441|fgenesh2_kg.1__2395__AT1G22070.1
Length=1742
Score = 2599 bits (1407), Expect = 0.0
Identities = 1650/1763 (94%), Gaps = 33/1763 (2%)
Strand=Plus/Plus
Query 1 TGATGCTTTTGTCGTTTCATCGTTCGTTTACTTCAACTTGCTTATTATTCTACGCTCATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGATGCTTTTGTCGTTTCATCGTTCGTTTACTTCAACTTGCTTATTATTCTACGCTCATG 60
Query 61 GACTAATCAAAGCCATGAGGaaaaaaaaaaaagcaacaac-acaaaatatatgta-taaa 118
||||||||||||| | || | |||||| ||| |||| || | ||||||||| || |||
Sbjct 61 GACTAATCAAAGCAACGAAG-AAAAAAGCAAA-CAAC-ACAAAAAAATATAT-TAGAAAA 116
Query 119 aaaataaatatCTCTGCttttttttttCAATGATGGGTACGCTTCACCTCTAAGTTTTGA 178
|||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 117 AAAAAAAATATCTCTGC----TTTTTTCAATGATGGATACGCTTCACCTCTAAGTTTTGA 172
Query 179 CCAAAGTTTTTCTTCATTTCTCTCTTCTCTCTTGTGGTCACCGTTTGATCGGAATATTCC 238
|||||| ||||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 173 CCAAAG-TTTTCTTCA-TT-TCTCTTCTCTCTTGTGATCACCGTTTGATCGGAATATTCC 229
Query 239 TTTTAGAATGCCAAGATTCATTCTTCATCTCTCGAGCTCCTCATGAATTTCTTCTCTGCT 298
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 230 -TTTAGAATGCCAAGATTCATTCTTCATCTCTCGAGCTTGTGATGAATTTCTTCTCTGCT 288
Query 299 TATCAATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACA 358
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TGTCAATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACA 348
Query 359 TGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAGTCCTTTCAAATCAGATA 418
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 349 TGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAATCCTTTCAAATCAGATA 408
Query 419 TCAACAAT-A--TTACTAGTAATCAGAATAACAATCAGAGTTCTTCAACAACACTTGAGG 475
|||||||| | ||| |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 409 TCAACAATAATCTTAGTAGTAATCAGAATAACAATCAGGGTTCTTCAACAACTCTTGAGG 468
Query 476 TTGATGCTAGACCAGAAGCAGATGATAACAATAGAGTGAATTATACTTCTGTG--T-ATA 532
| ||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||
Sbjct 469 TGGATGCTAGACCAGAACCAGATGATAACAATAGAGAGAATTATACTTCTGTGTATAATA 528
Query 533 ATAACTCTCTTGAAGCAGAACCGTCGAGTAATAATGATCAGGACGAAGACCGGATCAATG 592
|||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 529 ATAACTCTGTTGAAGCAGAACCTTCGAGTAATAATGATCACGACGAAGAACGGATCAATG 588
Query 593 ATAAGATGAAACGGCGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAA 652
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 589 ATAAGATGAAACGGCGTTTGGCTCAGAACAGAGAAGCTGCTCGCAAAAGTCGTTTGAGAA 648
Query 653 AGAAGGCCCATGTTCAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGCTCGAGCAGG 712
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 649 AGAAGGCCCATGTGCAACAGTTAGAAGAAAGTCGGTTAAAGTTGTCACAGCTCGAGCAGG 708
Query 713 AACTTGTAAGAGCTAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATC 772
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AACTTGTTAGAGCTAGGCAACAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATC 768
Query 773 TAGGACCAGCTGGGAATATGAACTCAGGTATTGCTGCATTTGAGATGGAATACACACACT 832
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TAGGACCAGCTGGGAACATGAACTCAGGTATTGCTGCATTTGAGATGGAATACACACACT 828
Query 833 GGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAG 888
Query 893 GTGACATTGAGCTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCC 952
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 889 GTGACATTGAGCTCAAAATGCTGGTAGATACTTGCTTGAACCACTACGCAAATCTCTTCC 948
Query 953 GCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAATGTGGCGAA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAATGTGGCGAA 1008
Query 1013 CTTCAACTGAACGCTTCTTCCAATGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATG 1072
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1009 CTTCAACTGAACGCTTCTTCCAGTGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATG 1068
Query 1073 TTGTGATGCCATACGTTGAGCCCTTAACCGATCAGCAACTGTTGGAGGTGCGTAACCTGC 1132
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 1069 TTGTGATGCCATACGTTGAGCCCTTAACCGATCAGCAACTCTTGGCGGTGCGTAACCTCC 1128
Query 1133 AACAGTCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGG 1192
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AACAATCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGG 1188
Query 1193 GTTTGGTCGAAAGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTC 1252
|||||||||||||||||||| |||||||| ||||| | ||||||| ||||||||||| ||
Sbjct 1189 GTTTGGTCGAAAGCATAGCATTTCAGATAGAAGTTATCGAGTCTGCGAATCACGGGGTTC 1248
Query 1253 CAATGGCTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACCAGGCGGATC 1312
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AAATGGCTTCGGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACCAGGCGGATC 1308
Query 1313 ATCTGAGACAACAGACCCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTC 1372
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATCTGAGACAGCAGACTCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTC 1368
Query 1373 GAGGGTTGCTCGCTCTAGGAGAATACTTCCACAGGCTGCGTGCTCTTAGTTCTCTCTGGG 1432
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GAGGCTTGCTCGCTCTAGGAGAATACTTCCACAGGCTGCGTGCTCTTAGTTCTCTCTGGG 1428
Query 1433 CAGCTCGTCCACGAGAACACACTTGACAAGTTAGGAGGCAAACAAAACAAAGAGAAAGAA 1492
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1429 CAGCTCGTCCACGAGAACACACTTGATAAGTTAGGAGGCAAACAAAACAAAGAGAAAGAA 1488
Query 1493 GCACAAGGCAGATGATGTTAGCTATAGGGACTTGCTTTATCTCTCAGAA-AGTGTTGGCT 1551
|||||||||||||||||||| |||||||||||| | | | | | | | ||| |||
Sbjct 1489 GCACAAGGCAGATGATGTTACCTATAGGGACTTTCAGAAAGTGTTTGGAGA-TGTAAGCT 1547
Query 1552 GATATTTTCTCCATTAGAGAGCATCATCTTCCTCATTGATGATTTTGTTTACTTGAAAGG 1611
||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1548 GATTTTTTCTCTATTAGAGAGCATCATCTTCCTCATTGATGTTTTTGTTTACTTAAAAGG 1607
Query 1612 AATAAGAGATGTGTAAATTTGGGTGGAAAACATGTAATGTCTTTGATGCATTAGGCTCTT 1671
|||||||||||||||||||||||||||||||| ||| | || ||| || ||||||||
Sbjct 1608 AATAAGAGATGTGTAAATTTGGGTGGAAAACAA-TAAAGG-TT-GATAAATAAGGCTCTT 1664
Query 1672 T-AT-TT-GTAAAATATATAGGGTTTGTTGTCACTCATCTCCTCGTATATGAAAATTTGA 1728
| || || |||||||||||||||||||||||||||| || | |||||| ||| |||
Sbjct 1665 TTATGTTTGTAAAATATATAGGGTTTGTTGTCACTCGTCA--T---ATATGAGAATCTGA 1719
Query 1729 GCCCACAATCAAATTTTTTGTCT 1751
| |||| ||||||||||||||||
Sbjct 1720 GTCCACCATCAAATTTTTTGTCT 1742
> Ahg909416 jgi|Araly1|909416|Al_scaffold_0002_2497
Length=1119
Score = 701 bits (379), Expect = 0.0
Identities = 748/921 (81%), Gaps = 45/921 (5%)
Strand=Plus/Plus
Query 551 AACCGTCGAGTAATAATGATC-AG--GACGAAGACCGGA-TCAATGATAAGATGAAACGG 606
|||| || |||||| || ||| || || || | | ||| || |||||||||||||||||
Sbjct 227 AACCATCTAGTAATGATAATCAAGATGATGATGGCAGGACTC-ATGATAAGATGAAACGG 285
Query 607 CGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTT 666
||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 286 CGTTTAGCGCAGAACCGTGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTT 345
Query 667 CAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGCTCGAGCAGGAACTTGTAAGAG-C 725
|||||| |||||||||||||||| ||||| || ||| | ||||| ||||| | || || |
Sbjct 346 CAACAGCTAGAAGAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAA-AGGC 404
Query 726 TAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATCT-AGGACCAGCTG 784
|| |||||||||||||||||| ||||| || |||||| |||| || || ||||| | |||
Sbjct 405 TAAGCAGCAGGGATTATGCGTGCGCAACTCGTCAGATTCTAGCTA-CTTAGGACTATCTG 463
Query 785 GGAATATGAACTCAGGTATTGCTGCATTTGAGATGGAATACACACACTGGCTAGAAGAGC 844
||| ||| ||| |||| |||||| |||||||||||||||| |||||||||| |||| |
Sbjct 464 GGAGTATTAACACAGGGATTGCTTCATTTGAGATGGAATATTCACACTGGCTTCAAGAAC 523
Query 845 AAAACAGGAGAGTTAGTGAGATT-CGAACAGCGCTCCAAGCTCATATAGGTGACATTGAG 903
||| |||||||||||| || | | ||||||||||| ||| |||||||| | ||||| ||
Sbjct 524 AAAGCAGGAGAGTTAGCGA-ACTACGAACAGCGCTTCAATCTCATATAAGCGACATAGAA 582
Query 904 CTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCCGCATGAAAGCT 963
||||| ||| | ||||| |||||||||||||| ||||| ||||| || || |||||| ||
Sbjct 583 CTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCGAATCTGTTTCGAATGAAATCT 642
Query 964 GATGCTGC-AAAGGCTGATGTGTTCTTCTTGATGTCGGGAATGTGGCGAACTTCAACTGA 1022
||||| || |||| | ||||| |||| |||||| |||||||||||| |||||||||||||
Sbjct 643 GATGCAGCGAAAG-CAGATGTTTTCTACTTGATATCGGGAATGTGGAGAACTTCAACTGA 701
Query 1023 ACGCTTCTTCCAATGGATTGGAGG-TTTCCGCCCATCCGAGCTTTTAAATGTTGTGATGC 1081
| | ||||| || ||||||||||| |||| | ||||||||||||||||| ||||||||||
Sbjct 702 AAGGTTCTTTCAGTGGATTGGAGGATTTC-GTCCATCCGAGCTTTTAAACGTTGTGATGC 760
Query 1082 CATA-CGTTGAGCCCTTAACCGATCAGCAACTGTTGGAGGTGCGTAACCTGCAACAGTCG 1140
| || | || | || ||||||||||| ||| | ||||| ||| | ||||| ||||| ||
Sbjct 761 CTTATC-TTCAACCATTAACCGATCAACAAGTCTTGGAAGTGAGAAACCTCCAACAATCA 819
Query 1141 TCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGC-TTAGATAAACTTCAGCAGGGTTTGG- 1198
|| || ||||||||||| ||||| |||||||| || ||||||||||| ||| |||| |
Sbjct 820 TCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATT-GATAAACTTCAACAGAGTTTAGC 878
Query 1199 TCGAAAGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTCCAATGG 1258
| |||||||| | ||| ||| ||| | |||||| ||| | |||
Sbjct 879 T-GAAAGCATTGTGATT--GATGCG-GTTATCGAGTCT------CAC--------A-TGG 919
Query 1259 CTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACCAGGCGGATCATCTGA 1318
|| |||| || ||||||||||||||||| ||| | |||||||| || || ||||||||||
Sbjct 920 CTGCAGCAATAGAGAATCTTCAAGCATTAGAGGGATTTGTGAATCAAGCAGATCATCTGA 979
Query 1319 GACAACAGACCCTGCAGCAAATGA-GTAAGATATTGACGACAAGACAGGCTGCTCGAGGG 1377
| ||||| || |||| |||||| | ||||| |||||||||||||| | ||||||||
Sbjct 980 GGCAACAAACTTTGCAACAAATGGCG-AAGATCTTGACGACAAGACAATCAGCTCGAGG- 1037
Query 1378 T-TGCTCGCTCTAGGAGAATA-CTTCCACAGGCTGCGTGCTCTTAGTTCTCTCTGGGCAG 1435
| | || ||| | ||||| || |||| |||| || ||||||||||||||||| |||||||
Sbjct 1038 TCTACTTGCTTTGGGAGAGTATCTTC-ACAGACTTCGTGCTCTTAGTTCTCTTTGGGCAG 1096
Query 1436 CTCGTCCACGAGAACACACTT 1456
||||||||||||||| |||||
Sbjct 1097 CTCGTCCACGAGAACCCACTT 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5