BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22160.1 Length=730 Score E Sequences producing significant alignments: (Bits) Value Ahg472449 jgi|Araly1|472449|fgenesh2_kg.1__2403__AT1G22160.1 1013 0.0 > Ahg472449 jgi|Araly1|472449|fgenesh2_kg.1__2403__AT1G22160.1 Length=713 Score = 1013 bits (548), Expect = 0.0 Identities = 674/730 (92%), Gaps = 27/730 (4%) Strand=Plus/Plus Query 1 ACTTCCCTCTTTCTCTCTTTCACTTTGCTCTGTTCACTCAGAGCATCAAATAAACAAAAG 60 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1 ACTTCCCTCTTTCTCTCTTTCACTTTGCTCTGTTCACTCAGAGCATC-AAGAAACAAAAG 59 Query 61 AGAGAAACCAAAACCACACAAGACTAACGATGTTGCTAGGGAAGAGACAGAGACCACCAA 120 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 60 AGAGAAACCAAAAACACACAATACTAACGATGTTGCTAGGGAAGAGACAGAGACCACCAA 119 Query 121 TAAAGAGAACCACGAGTCTATCTGAGATTAAGTTCGATTTGAATCAACCTAGCGAACAAG 180 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 120 TAAAGAGAACCACGAGTCTCTCTGAGATCAAGTTCGATTTGAATCAACCTAGCGAACAAG 179 Query 181 AACCATCCGATCATCAGATTCAGCTTGTGAACGTTGATGAACATCGTCAAGTTCATCAAA 240 |||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||| Sbjct 180 AACCATCCAATCATCAGATTCAGCTCGTGGCCGTTGATGAACACCGTCAAGTTCATCAAC 239 Query 241 GATTGTTAGATCAACGGCTTTTAGCGATGGTCTCACCAAGAGGTACACAGAGAAGACACT 300 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 240 GATTGTTAGATCAACGGCTCTTAGCGATGGTCTCACCAAGAGGTACACAGAGAAGACACT 299 Query 301 CAAGTGATTATTCTGAAGATTTTCTAAGATCTTGCTCTCTTTGTAAACGTCTTCTTGTTC 360 |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 300 CAAGTGATTACTCTGAAGATTTTCTGAGATCTTGCTCTCTTTGTAAACGTCATCTTGTTC 359 Query 361 ATGGCCGTGACATCTATATGTATAGAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTGGCCGTGACATCTATATGTATAGAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGC 419 Query 421 AACAACAAATTACAGTGGACGAGAGGAAGGAGAAGAAGAAAGGTTCGGTGAGGTCCACCA 480 |||||||||||||||||||||||| | | | ||| | |||||||||||||||| Sbjct 420 AACAACAAATTACAGTGGACGAGA--A-G-A-AAG--G-----TTCGGTGAGGTCCACCG 467 Query 481 TCGTCGTCGCCACCGGAACCACCACAGGAGAGAGAGTTTCCGCCGCCGTGTAGGTCTCTT 540 ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 468 TCGTCGTAGCCGCCGGAACCACCACTGGAGAGAGAGTTTCCGCCGCCGTGTAGGTCTCTT 527 Query 541 TTACATATGTTATATATTATCGGTAATGATTGTATTATATG---G-TTCTTGT--TTT-A 593 | |||||| |||| || |||||||||||||||||||||||| | ||||||| ||| | Sbjct 528 T-ACATATATTATGTAATATCGGTAATGATTGTATTATATGCCTGGTTCTTGTAATTTTA 586 Query 594 TGTATAAAAAGCATTGAGCACTATTGACTGTGATTAACCATGTTAATCATCCTTTAAACC 653 |||||||||||||||||| | | | |||||||||||||||||||||||||||| ||||| Sbjct 587 TGTATAAAAAGCATTGAGGA-T-T-GACTGTGATTAACCATGTTAATCATCCTATAAACT 643 Query 654 TTGCTTTTGATCTTAAGAATTATTGTATTATGCATATTAATTA---GATTTGTGTTCTAC 710 |||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct 644 TTGCTTTTAATCTTAAGAATTATTGTGTTTTGCATATTAATTATTAGATTTGTGTTCTAC 703 Query 711 TGATTATTCT 720 |||||||||| Sbjct 704 TGATTATTCT 713 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26876656485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5