BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22190.1 Length=1507 Score E Sequences producing significant alignments: (Bits) Value Ahg472454 jgi|Araly1|472454|fgenesh2_kg.1__2408__AT1G22190.1 1687 0.0 Ahg476975 jgi|Araly1|476975|fgenesh2_kg.2__2105__AT1G78080.1 206 5e-52 > Ahg472454 jgi|Araly1|472454|fgenesh2_kg.1__2408__AT1G22190.1 Length=1386 Score = 1687 bits (913), Expect = 0.0 Identities = 1191/1317 (90%), Gaps = 52/1317 (4%) Strand=Plus/Plus Query 9 CCAAGCTAATGAGATAAGTGTATCGGTGAGGCTGAGAGTTATTCACTTACaaaaaaaaaa 68 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCAAGCTAATGAGATTAGTGTATCGGTGAGGCTGAGAGTTATTCACTTACAAAAAAAAAA 62 Query 69 aaaa-acttgagtgtaaccaaaaaaaaaaGTTGATATACTTTCTGGTTTTCTCCTTAAC- 126 |||| ||||||| | || |||||||||||||||||| ||||||| ||||||||| ||| Sbjct 63 AAAACACTTGAGGGCAATAAAAAAAAAAAGTTGATATTCTTTCTGATTTTCTCCTGAACT 122 Query 127 TTTTATTCTTTACAAATCCATCCCCCTTAGATCTGTTTATTTCCCGCTACTTTGATTCAT 186 ||||||||| | |||||||| ||||| ||||||||||||||||||||||||| || || Sbjct 123 TTTTATTCTGTGCAAATCCACCCCCCATAGATCTGTTTATTTCCCGCTACTTCGA-TC-- 179 Query 187 TTCTGTTAGTAATCTGTCTTTCGTATAGAAGAAAACTGATTTCTTGGTTTGTATTTTCTT 246 | || | || | || ||| | ||||| ||||||||||||||||||||||| Sbjct 180 --C--------AT-T-TC--T-GT-TAG-A-AAAACCGATTTCTTGGTTTGTATTTTCTT 221 Query 247 AAAGAGATCAATCtttttttatttttgatcttcttgtgtttttttttctttGTAGAATTA 306 ||| ||||||| |||||||||| |||||||||||| |||||||||||||||||| ||| Sbjct 222 AAATTTATCAATC-TTTTTTATTTCTGATCTTCTTGT-TTTTTTTTTCTTTGTAGATTTA 279 Query 307 ATCGTTTGTGAGGGTAtttttttAATTCCCTCCTCTCAGAAATCTACACAGAGGtttttt 366 ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| Sbjct 280 ATCGTTTGTGAGGGTATTTTTTT-ATTCCCTCCTCTCAG--ATCTACACAGAGGTAGTTT 336 Query 367 attttataaacctctttttcgattttcttgaaaacaaaaaatcctgttctttactttttt 426 |||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||| Sbjct 337 ATTTTATAAACCTCTTTTTCGAATTTCTTG---A-AAAAAATCCTGTTCTTTAC-TTTTT 391 Query 427 tACAAGAACAAGGGaaaaaaaTT-TC--------TTTTTATTAGAAATGACAACTTCTAT 477 | ||||||| | ||||||||||| || ||||||||| |||||||||||||||| Sbjct 392 T-CAAGAACCA-GGAAAAAAATTCTCGAATTTAATTTTTATTATAAATGACAACTTCTAT 449 Query 478 GGATTTTTACAGTAACAAAACGTTTCAACAATCTGATCCATTCGGTGGTGAATTAATGGA 537 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 450 GGATTTCTACTGTAACAAAACGTTTCAACAATCTGATCCATTCGGTGGTGAATTAATGGA 509 Query 538 AGCGCTTTTACCTTTTATCAAAAGCCCTTCCAACGATTCATCCGCGTTTGCGTTCTCTCT 597 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 510 AGCGCTTTTACCTTTTATCAAAAGCTCTTCCAACGATTCTTCCGCGTTTGCGTTCTCTCT 569 Query 598 ACCCGCTCCAATTTCATACGGGTCGGATCTCCACTCATTTTCTCACCATCTTAGTCCTAA 657 ||| | ||| ||| ||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 570 ACCTGATCCGATTCCATACGGGTCGGACCTCCACTCGTTCTCTCACCATCTTAGTCCTAA 629 Query 658 ACCGGTCTCAATGAAACAAACCGGTACTTCCGCGGCTAAACCGACGAAGCTATACAGAGG 717 ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||| Sbjct 630 ACCGGTCTCAATGAAACAAACCGGTTCTTCAGCGCCTAAACCGACGAAGCTATACCGAGG 689 Query 718 AGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATTCGTTTACCGAGGAATCGAAC 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 690 AGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATTCGTTTACCGAGGAATCGAAC 749 Query 778 TCGACTTTGGCTCGGAACATTCGACACGGCGGAGGAAGCTGCTTTAGCTTATGACAAGGC 837 ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 750 TCGGCTTTGGCTCGGAACATTCGATACGGCGGAGGAAGCTGCATTAGCCTATGACAAGGC 809 Query 838 GGCGTATAAGCTCCGAGGAGATTTTGCGC-GGCTTAATTTCCCTGATCTCCGTCATAACG 896 |||||||||||| || || ||||| || | |||||||||||||| ||||||||||||||| Sbjct 810 GGCGTATAAGCTGCGCGGCGATTTCGC-CAGGCTTAATTTCCCTAATCTCCGTCATAACG 868 Query 897 ACGAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAACT 956 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 GCGAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAACT 928 Query 957 TAGCTGAGACGACGCAGAAACAGGTGAGATCAACGAAGAAGTCTTCTTCTCGGAAACGTT 1016 ||||||||| ||| || ||||||| || ||||||||||||||||||||| |||||||||| Sbjct 929 TAGCTGAGATGACTCAAAAACAGGGGAAATCAACGAAGAAGTCTTCTTCCCGGAAACGTT 988 Query 1017 CATCAACCGTCG-CAGTGAAACTACCGGAGGAGGACTACTCTAGCGCCGGATCTTCGCCG 1075 ||||||||| || | | ||||| |||||||||||| ||||||||||| || ||||||||| Sbjct 989 CATCAACCGCCGTC-GCGAAACAACCGGAGGAGGATTACTCTAGCGCTGGTTCTTCGCCG 1047 Query 1076 CTGTTAACGGAGAGTTATGGATCTGGTGGATCTTCTTCGCCGTTGTCGGAGCTGACGTTT 1135 | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1048 CCGTTAACGGAGAGTTACGGATCTGGTGGATCTTCTTCGCCGTTGTCGGATCTGACGTTT 1107 Query 1136 GGTGATACGGAGGAGGAGATTCAGCCGCCGTGGAACGAGAACGCGTTGGAGAAGTATCCG 1195 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 1108 GGTGATACGGAGGAGGAGATTCAGCCGCCGTGGAATGAGTTTGCGTTGGAGAAGTATCCG 1167 Query 1196 TCGTACGAGATCGATTGGGATTCGATTCTTCAGTGTTCGAGTCTTGTAAATTAGATGTTG 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1168 TCGTACGAGATCGATTGGGATTCGATTCTTCAGTGTTCGAGTCTTGTAAATTAGTTGATG 1227 Query 1256 CCATAGGGGTATTTTAGGGACT-TTAGA-GCTCTCTGCGATGGAGTTTTTGGTCATT 1310 || ||||||||||||||| | | ||||| | || |||| |||||||||||||||||| Sbjct 1228 CCGTAGGGGTATTTTAGGAA-TATTAGATG-TCACTGCAATGGAGTTTTTGGTCATT 1282 > Ahg476975 jgi|Araly1|476975|fgenesh2_kg.2__2105__AT1G78080.1 Length=1370 Score = 206 bits (111), Expect = 5e-52 Identities = 256/321 (80%), Gaps = 29/321 (9%) Strand=Plus/Plus Query 698 CCGACGAAGCTATACAGAGGAGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATT 757 ||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 795 CCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGTAAATGGGTGGCTGAGATC 854 Query 758 CGTTTACCGAGGAATCGAACTCGACTTTGGCTCGGAACATTCGACACGGCGGAGGAAGCT 817 ||||| ||||||||||| ||||| || ||||| || || || |||||||||||||||||| Sbjct 855 CGTTTGCCGAGGAATCGGACTCGTCTCTGGCTTGGGACCTTTGACACGGCGGAGGAAGCT 914 Query 818 GCTTTAGCTTATGACAAGGCGGCGTATAAGCTCCGAGGAGATTTTGCGCGGCTTAATTTC 877 || | || ||||| ||||||||||||||||| || || ||||| || |||||||| ||| Sbjct 915 GCGCTGGCCTATGATAAGGCGGCGTATAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTC 974 Query 878 CCTGA--T-C-TC----C-G---TCATAAC-GA--CGA-----GT--AT-C-AACCTCTT 913 ||| | | | || | | ||| | | || ||| || || | |||||||| Sbjct 975 CCTAACCTACGTCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATACAAACCTCTT 1034 Query 914 CAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAA-CTTAGCTGAGACGACGCA 972 || || |||||||||||||||||||||||||||||| |||| | | || | || ||| || Sbjct 1035 CACTCTTCAGTCGACGCTAAGCTTGAAGCTATTTGT-AAAAGCATGGC-G-GA-GACTCA 1090 Query 973 GAAACAGGTGAGATCAACGAA 993 |||||||| || | | ||||| Sbjct 1091 GAAACAGGAGAAACCGACGAA 1111 Score = 97.1 bits (52), Expect = 3e-19 Identities = 99/119 (83%), Gaps = 13/119 (11%) Strand=Plus/Plus Query 1109 TCTTCGCCGTTGTCGGAGC-TGACGTTTGGTGATACGGAGGAGGAGATTCAGCCGCCGTG 1167 ||||||||||||||||| | |||| || | |||| | ||||||| | ||||| ||| Sbjct 1257 TCTTCGCCGTTGTCGGA-CTTGACCTTCGCTGAT-C--CGGAGGAG---CCGCCGCAGTG 1309 Query 1168 GAACGAGAACG----CGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATT 1222 ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1310 GAACGAG-ACGTTCTCGTTGGAGAAGTTTCCGTCGTACGAGATCGATTGGGATTCGATT 1367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56411652845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5