BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22250.1 Length=818 Score E Sequences producing significant alignments: (Bits) Value Ahg335470 jgi|Araly1|335470|fgenesh1_pg.C_scaffold_1002035 898 0.0 > Ahg335470 jgi|Araly1|335470|fgenesh1_pg.C_scaffold_1002035 Length=609 Score = 898 bits (486), Expect = 0.0 Identities = 570/610 (93%), Gaps = 8/610 (1%) Strand=Plus/Plus Query 98 ATGTTTTCTCCACATGATGGAACACTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT 157 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTTTCTCTACGTGATGGAACCCTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT 60 Query 158 GGAGAATCGTTTCATGGTTCTTTCAAAAGGAGCAAACAAGGAGATCAAAAACAAACCAAA 217 ||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||| Sbjct 61 GGAGAATCGTTTCATGGTTCTTTTAAACGGAGCAAACAAGAAGATCAAACACAAACCAAA 120 Query 218 TTTGAGAAGAACACTACTACTCT-GTTCTTTCAAAGATCAAAGTCAGATAGCGCCATGTT 276 ||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||| Sbjct 121 CTTGAGAAGAACTCTACTACTCTGGTT-TTTCAAAGATCAAAGTCAGAGAGCGCCATGTT 179 Query 277 GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA 239 Query 337 TCATAGGACAGACCTGGACCTTAATTTGAACCTTTATTCGTCATCAAGTTCCTCTGTCaa 396 |||||||||||||||||||||||||||||| |||| |||||||||||||| | | | || Sbjct 240 TCATAGGACAGACCTGGACCTTAATTTGAATCTTTCTTCGTCATCAAGTTTCAATATGAA 299 Query 397 aaaaaCAATCATGGAGAAAGATGAATGTTCCAAAGGCGGAACTGTGATCAT--C-AGCCC 453 |||||||||||||||||||||||||||||| ||||| | | || ||||||| | | ||| Sbjct 300 AAAAACAATCATGGAGAAAGATGAATGTTCGAAAGGAGTATCTTTGATCATGACTACCCC 359 Query 454 AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT 419 Query 514 TGAAGGTGATGATGATGAT-A-A-TCAGAAGAAGCAAGAGATGATAACAACAGTGTGCAT 570 ||||||||||||||||||| | | ||||||||||||||||||| |||||||||| ||||| Sbjct 420 TGAAGGTGATGATGATGATGATAGTCAGAAGAAGCAAGAGATGGTAACAACAGTTTGCAT 479 Query 571 GAAGTGTCACATGCTGGTTATGCTCTGCAAATCTACTCTTGTCTGTCCTAACTGCAAATT 630 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 480 GAAGTGTCACATGCTGGTTATGCTCTGTAAATCAACTCTTGTATGTCCTAACTGCAAATT 539 Query 631 CATGCACCATGATGATCATAGCTCCACTAAACAGTTTCAGACTTTAAATTTGTTTAAGCT 690 ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 540 CATGCACCAAGATGATCATAGCTCCACAAAACAGTTTAAGACTTTAAATTTGTTTAAGCT 599 Query 691 CTTATGCTAG 700 ||| |||||| Sbjct 600 CTTGTGCTAG 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30231473181 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5