BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22490.1 Length=1215 Score E Sequences producing significant alignments: (Bits) Value Ahg335492 jgi|Araly1|335492|fgenesh1_pg.C_scaffold_1002057 1341 0.0 > Ahg335492 jgi|Araly1|335492|fgenesh1_pg.C_scaffold_1002057 Length=939 Score = 1341 bits (726), Expect = 0.0 Identities = 870/939 (93%), Gaps = 12/939 (1%) Strand=Plus/Plus Query 104 ATGCCCTTAGAGGCTGTCGTATACCCGCAAGATCCATTCGGATATCTCTCCAATTGCAAA 163 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1 ATGCCCTTAGAGGCTGTCGTATACCCGCAAGATCCATTCGGATATCTTTCTAATTGCAAA 60 Query 164 GATTTTATGTTCCACGACTTATACTCTCAAGAAGAGTTCGTAGCTCAAGATACGAAGAAC 223 ||||| |||||||||||||| | ||||||||||||| || |||||||||||||||||||| Sbjct 61 GATTTCATGTTCCACGACTTGTGCTCTCAAGAAGAGGTCTTAGCTCAAGATACGAAGAAC 120 Query 224 AACATTGATAAGTTAGGGCATGAACAGAGCTTTGTGGAACAAGGTAAGGAGGACGATCAT 283 |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| | Sbjct 121 AACATTGATAAGTTAGGGCAAGAACAGAGATTTGTGGAACAAGGTAAGGAGGAGGATCGT 180 Query 284 CAATGGCGAGACTATCATCAGTATCCTTTGTTGATCCCTTCGTTGGGAGAAGAGCTTGGT 343 ||||||||| ||||| ||||||| ||||| || ||||| ||||||| ||||||||||||| Sbjct 181 CAATGGCGAAACTATAATCAGTACCCTTTATTAATCCCATCGTTGGAAGAAGAGCTTGGT 240 Query 344 CTTACCGCCATTGATGTGGAGAGTCATCCTCCTCCACAGCACCggaggaagaggaggaga 403 ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 241 CTTCCCGCCATTGATGTGGAGAATCATCCTCCTCCACAGCAGCGGAGGAAGAGGAGGAGA 300 Query 404 acgagaaactgcaagaacaaggaagagatcgagaaccagagaaTGACTCACATCGCCGTC 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ACGAGAAACTGCAAGAACAAGGAAGAGATCGAGAACCAGAGAATGACTCACATCGCCGTC 360 Query 464 GAGAGAAATCGCCGGAAACAGATGAACGAGTATCTGGCTGTGCTCCGTTCTCTAATGCCG 523 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 361 GAGAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCTGTGCTCCGTTCTCTAATGCCG 420 Query 524 TCGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAGGAGGAGCTATAAACTACGTG 583 | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 421 TTGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAGGAGGAGCTATTAACTTCGTG 480 Query 584 AAGGAGTTAGAGCATATTTTACAATCTATGGAGCCGAAGAGAACTAGGAC----TC-A-- 636 ||||||||||||||||| ||||||||||||| ||| |||||||| ||||| || | Sbjct 481 AAGGAGTTAGAGCATATCTTACAATCTATGGGGCCTAAGAGAACCAGGACCACGTCCACG 540 Query 637 -----TGATCCCAAAGGAGACAAGACTAGCACTAGCTCGTTAGTGGGTCCATTCACAGAT 691 ||||||| |||||| ||| ||||||||||||||||| |||||||| ||| ||||| Sbjct 541 ACACATGATCCCGAAGGAGCCAATACTAGCACTAGCTCGTTGGTGGGTCCCTTCTCAGAT 600 Query 692 TTTTTCAGCTTCCCACAATATTCTACAAAGTCATCATCAGATGTACCGGAAAGCTCATCT 751 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 601 TTTTTCAGCTTCCCTCAATATTCTACAAAGTCATCATCAGAAGTACCGGAAAGCTCATCT 660 Query 752 TCACCGGCGGAGATAGAGGTTACGGTGGCAGAAAGCCATGCGAACATCAAGATAATGACG 811 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| || | Sbjct 661 TCACCAGCGGAGATAGAGGTGACGGTGGCAGAAAGCCACGCGAACATCAAGATACTGGTG 720 Query 812 AAGAAGAAACCGAGGCAGCTTCTTAAGCTCATAACTTCTTTACAAAGCCTAAGGCTCACT 871 |||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||| Sbjct 721 AAGAAGAAACCGAGGCAGCTTCTTAAACTTATAGCTTCTTTACAAAGTCTAAGGCTCACT 780 Query 872 CTTCTTCATCTCAATGTCACCACTCTCCACAACTCCATTCTCTACTCCATCAGCGTCAGG 931 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CTTCTTCATCTTAATGTCACCACTCTCCACAACTCCATTCTCTACTCCATCAGCGTCAGG 840 Query 932 GTTGAAGAAGGAAGCCAACTGAATACCGTGGACGACATTGCAACAGCTTTGAATCAAACC 991 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 841 GTTGAAGAAGGTAGCCAGTTGAATACCGTGGACGACATTGCAACAGCTTTGAATCATACC 900 Query 992 ATAAGGAGGATTCAAGAAGAGACATAATTCAGCAAATAG 1030 |||||||||||||| |||||| | || |||||||||||| Sbjct 901 ATAAGGAGGATTCAGGAAGAGTCGTATTTCAGCAAATAG 939 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45366271230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5