BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22530.1
Length=2448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472493 jgi|Araly1|472493|fgenesh2_kg.1__2447__AT1G22530.1 2309 0.0
Ahg926577 jgi|Araly1|926577|scaffold_202138.1 867 0.0
> Ahg472493 jgi|Araly1|472493|fgenesh2_kg.1__2447__AT1G22530.1
Length=2313
Score = 2309 bits (1250), Expect = 0.0
Identities = 1421/1501 (95%), Gaps = 22/1501 (1%)
Strand=Plus/Plus
Query 870 GCTCCGGTCACCACAGAGACCAAGGAGGAAGAGAAAG-CAGCTCC-G--G--GA-GAGAC 922
||||||||| |||||||||||||||||||||||||| || |||| | | || |||||
Sbjct 822 GCTCCGGTCGTCACAGAGACCAAGGAGGAAGAGAAAGCCA-CTCCGGTCGTCGATGAGAC 880
Query 923 CAAGAAAGAAGAGAAAGCAACCGCCTCTACTCAGGTCAAGAGGG-C--CTCAAAATTTAT 979
|||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||||||
Sbjct 881 CAAGAAAGAAGAGAAAGCAAGCGCCTCTGCTCCGGTCAAGAGGGCCGTCTCAAAATTTAT 940
Query 980 TAAAGATATATTTGTCTCAGTCACCACTAGCGagaagaagaaggaagaagagaaACCAGC 1039
|||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 941 TAAAGATATATTTGTCTCGGTCACCACTACCGAGAAAAAGAAGGAAGAAGAGAAACCAGC 1000
Query 1040 AGTAGTAACAATCGAGAAGGCTTTCGCAGCTGATCAAGAAGAAGAAACAAAAACCGTTGA 1099
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1001 AGTAGTAACAATCGAGAAGGCTTTCGCAGCTGATCAAGAAGAAGAAACCAAAACCGTTGA 1060
Query 1100 AGCAGTCGAAGAATCAATCGTCTCCATCACTCTTCCAGAGACAGCTGCATACGTAGAGCC 1159
|||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AGCAACCGAAGAACCGATCGTCTCCATCACTCTTCCAGAGACAGCTGCATACGTAGAGCC 1120
Query 1160 AGAAGAAGTCTCAATCTGGGGAATCCCACTTCTAGAGGACGAAAGATCCGACGTGATCCT 1219
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1121 AGAAGAAGTCTCAATCTGGGGAATACCACTTCTAGAGGACGAAAGATCCGACGTAATCCT 1180
Query 1220 CCTCAAATTCCTCCGTGCACGTGACTTCAAGGTCAAAGAAGCCTTCACGATGCTGAAAAA 1279
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CCTCAAGTTCCTCCGGGCACGTGACTTCAAGGTCAAAGAAGCCTTCACGATGCTGAAAAA 1240
Query 1280 CACCGTCCAATGGCGCAAAGAGAACAAGATCGACGACCTAGTCTCAGAAGATCTTGAAGG 1339
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1241 CACCGTCCAATGGCGCAAAGAGAACAACATCGATGACCTAGTCTCAGAAGATCTCGAAGG 1300
Query 1340 AAGCGAGTTTGAGAAGTTGGTGTTCACTCACGGTGTCGACAAACAAGGACATGTCGTGAT 1399
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1301 AAGCGAGTTCGAGAAGTTGGTGTTCACTCACGGTGTCGACAAACAAGGACATGTTGTGAT 1360
Query 1400 CTATAGCTCGTACGGTGAGTTTCAGAACAAGGAGATTTTCTCAGATAAAGAGAAGCTTAG 1459
||| ||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 1361 CTACAGCTCGTACAGTGAGTTTCAGAACAAGGAGGTTTTCTCAGACAAAGAGAAACTTAG 1420
Query 1460 CAAGTTTCTCAAATGGAGGATTCAGTTCCAAGAGAAGTGTGTGAGGTCTCTTGACTTTAG 1519
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1421 CAAGTTCCTCAAATGGAGGATTCAATTCCAAGAGAAGTGTGTGAGGTCTCTTGACTTTAG 1480
Query 1520 CCCTGAGGCTAAGTCATCGTTCGTGTTCGTTAGTGACTTCAGGAACGCTCCTGGACTTGG 1579
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1481 CCCTGAGGCTAAGTCATCGTTCGTGTTCGTCAGTGACTTCAGGAACGCTCCTGGACTTGG 1540
Query 1580 TCAGAGAGCATTGTGGCAGTTCATTAAACGCGCCGTTAAGCAATTCGAAGATAACTATCC 1639
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1541 TCAGAGAGCATTGTGGCAGTTCATTAAACGTGCCGTTAAGCAATTTGAAGATAACTATCC 1600
Query 1640 AGAGTTTGTCGCTAAAGAGCTGTTCATTAATGTCCCATGGTGGTACATTCCTTACTACAA 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 AGAGTTTGTCGCTAAAGAGCTGTTCATTAATGTCCCATGGTGGTACATTCCTTACTACAA 1660
Query 1700 AACATTCGGAAGTATCATTACATCGCCAAGGACAAGGAGCAAGATGGTCCTTTCTGGTCC 1759
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1661 AACATTCGGAAGTATCATTACATCGCCGAGGACAAGAAGCAAGATGGTCCTTTCTGGGCC 1720
Query 1760 ATCCAAATCCGCTGAGACCATTTTCAAATACGTAGCTCCTGAAGTAGTCCCGGTTAAGTA 1819
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1721 ATCCAAATCCGCTGAGACCATTTTCAAATATGTAGCTCCTGAAGTAGTCCCGGTTAAGTA 1780
Query 1820 TGGTGGACTCAGCAAAGATAGTCCATTCACCGTTGAAGATGGAGTCACCGAGGCCGTAGT 1879
|||||| || |||||||| || ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1781 TGGTGGTCTGAGCAAAGAGAGCCCATTCACCGTCGAAGATGGAGTCACCGAGGCCGTTGT 1840
Query 1880 TAAATCGACATCTAAATATACCATTGATTTGCCTGCTACAGAGGGTTCCACGCTCTCATG 1939
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1841 TAAATCCACATCTAAATATACCATTGATTTGCCTGCTACCGAGGGTTCCACGCTCTCATG 1900
Query 1940 GGAGCTTAGGGTTTTGGGTGCGGACGTGAGCTACGGAGCTCAATTTGAGCCAAGCAATGA 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 GGAGCTTAGGGTTTTGGGTGCGGACGTGAGCTACGGAGCTCAATTTGAGCCAAGCAATGA 1960
Query 2000 GGCAAGCTACACCGTGATTGTCTCTAAGAACCGGAAGGTCGGTTTAACTGATGAACCGGT 2059
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1961 GGCAAGCTACACGGTGATCGTCTCTAAGAACCGGAAGGTCGGTTTAACTGATGAACCTGT 2020
Query 2060 GATAACCGATTCTTTCAAGGCAAGTGAGGCGGGAAAGGTCGTGATCACGATTGACAACCA 2119
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2021 GATAACCGATTCTTTCAAGGCAAGTGAACCGGGAAAGGTCGTGATCACGATTGACAACCA 2080
Query 2120 AACCTTTAAGAAGAAGAAGGTGCTCTACAGGTCCAAAACCCAAGCATAA-GATTATGTGT 2178
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 2081 GACCTTTAAGAAGAAGAAGGTGCTCTACAGGTCCAAAACCCAAGCATAAAGATCATGTAT 2140
Query 2179 CCGATCTTTGAATGAATGAAGAAACAAGAAAGATGGTT-GGGAATTTTAATTCATTTAAT 2237
|||||||||||||||| ||| ||| ||||||||||| ||||||||||||| |||||||
Sbjct 2141 CCGATCTTTGAATGAA-GAA-AAA---GAAAGATGGTTTGGGAATTTTAATTAATTTAAT 2195
Query 2238 TTAGTACGTTTATTCATTTGTGTATTTTTGAAACCT-AAAAGAAGgtttgtgttttatgg 2296
|||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 2196 TTAGTACGTTTATTCATTTGTGTATTTTTGAAACCTCAAAAGG-GGATTGTGTTTTATCA 2254
Query 2297 atggttttgatttgttttggtgatgggatttttttttGTTGATGATTCTTATATATACAA 2356
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2255 ATGGTTTTGATTTGTTT-GGTGATGGGATTTTTTTT-GTTGATGATTCTTATAAATACAA 2312
Query 2357 A 2357
|
Sbjct 2313 A 2313
Score = 785 bits (425), Expect = 0.0
Identities = 784/941 (83%), Gaps = 90/941 (10%)
Strand=Plus/Plus
Query 16 tctcttctctctttttataagaactcttcttcttcttcttctctctcaattccatctctc 75
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 TCTCTTCTCTCTTTTTATAAGACCTCTTCTTCTTCTTCTTCTCTCTCAATTCCA----TC 56
Query 76 tctctctttctagttcttGTTCCCTTTCGAATCAAGT-GATCATGGCTCAAGAAGAGATA 134
|||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 57 TCTCTCTTTCTAATTCTTGTTCCCTTTTGCATCAAGTCAATCATGGCTCAAGAAGAGATA 116
Query 135 CAGAAACCTACTGC--C---T-CTGTTC-CAG-T--GGTTAAGGAGGAAACTCCTGCCCC 184
||||||||| |||| | | ||| | | | | |||||||||||| |||||||| ||
Sbjct 117 CAGAAACCTGCTGCTTCAATTACTG-CCTCTGTTACGGTTAAGGAGGATACTCCTGCGCC 175
Query 185 GGTTAAGGAGGTTGAGGTGCCGGTTACTACGGAGAAAGCTGTGGCTGCGCCTGCTCCGGA 244
||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||| |||
Sbjct 176 GGTTAAGGAGGTTGAGGTGCCCGTTGCAACGGAGAAAGCTGTGGCAGCGCCTGCTCTGGA 235
Query 245 --AGCTACG--GAG---GAGAAAGTTGTGTCTGAGGTGGCGGTGCCTGAAACAGAGGTGA 297
|| | | | | ||||| | ||| | | ||||||||||| ||||| |||||||
Sbjct 236 GGAG-AAAGTTGTGTCTGAGAAGGAGGTGCCCGTCGTGGCGGTGCCGGAAACGGAGGTGA 294
Query 298 CGGCGGTGAAAGAGGAGGAGGTTGCGACGGGAAAGGAGATCTTGCAATCGGAGTCGTTTA 357
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 295 CGGCGGTGAAAGAGGAGGAGGTTGTGACGGGGAAGGAGATCTTGCAATCGGAATCGTTTA 354
Query 358 AGGAGGAAGGCTATTTGGCTTCTGAATTACAGGAAGCTGAGAAGAATGCTTTGGCTGAGT 417
|||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||
Sbjct 355 AGGAGGAAGGCTATTTGGCTTCTGAATTGCCGGAAGCTGAAAAGAATGCGTTGGCTGAGT 414
Query 418 TAAAGGAGTTGGTTAGGGAGGCTTTGAACAAGCGTGAATTCACCGCGCCACCGCCACCAC 477
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 415 TAAAGGAGATGGTTAGGGAGGCTTTGAACAAGCGTGAATTCACCGCG---CCG---CCAC 468
Query 478 CAGCTCCGGTaaaggaagagaaagttgaggagaagaaaacagaggaaacagaggaaaaga 537
||||||||| ||||||||||||||||| | | || | ||| ||||
Sbjct 469 CAGCTCCGGCCAAGGAAGAGAAAGTTGA-G-G-AG---A-AGA--AAAC----------- 508
Query 538 aggaagaagttaaaacagaggaaaaaTCTCTTGAGGCTGAAACCAAAGA-AGAGGAGAAA 596
| | || | ||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 509 A-G-AG--G---AAACAGAGGAAAAATCTGTTGAGGCTGAAACCAAA-ACAGAGGAGAAA 560
Query 597 TCTGCTGCTCCGGCCACCGTAGAGACCAAGAAAGAAGAGATCTTGGCCGCTCCGGCTCCG 656
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 561 TCTGCTGCTCCGGCCACCGTAGAGACCAAGAAAGAAGAGATATTGGCCGCTCCGGCTCCA 620
Query 657 ATCGTCGCAGAGACCAAGAAGGAAGAGACACCAGTTGCTCCTGCTCCGGTAGAGACTAAA 716
|||||||||||||||||||||||||||| | | || |||||| ||||||||||||||| |
Sbjct 621 ATCGTCGCAGAGACCAAGAAGGAAGAGAAATCGGTCGCTCCTACTCCGGTAGAGACTACA 680
Query 717 CCGGCTGCTCCGGTCGTTGCAGAGACAAAGAAGGAAGAAATATTA-CCAGCTGCT-C-C- 772
|| |||||||| |||||||||||||| ||||||||||| |||| | || ||| || | |
Sbjct 681 CCTGCTGCTCCTGTCGTTGCAGAGACCAAGAAGGAAGAGATATCAGCC-GCTCCTACTCC 739
Query 773 GGTC-A--CCA--C-AGA-G--------ACCA-AG-G-------TGGAAGAGAAAGTCGT 808
||| | ||| | || | |||| || | ||||||||||||||||
Sbjct 740 GGTTGAAACCAAACCAGCTGCTCCGGTCACCACAGAGACCAAGGTGGAAGAGAAAGTCGT 799
Query 809 TCCAGTAGAAACCACACCGGCTGCTCCAGTCACCACAGAGACCAAGGAAGAAGAGAAAGC 868
||| ||||| ||||||||||| ||||| ||| ||||||||||||||| |||||||||||
Sbjct 800 TCCCGTAGAGACCACACCGGCGGCTCCGGTCGTCACAGAGACCAAGGAGGAAGAGAAAGC 859
Query 869 CGCTCCGGTCACC-ACAGAGACCAAGGAGGAAGAGAAAGCA 908
| |||||||| | | ||||||||| | ||||||||||||
Sbjct 860 CACTCCGGTCGTCGAT-GAGACCAAGAAAGAAGAGAAAGCA 899
> Ahg926577 jgi|Araly1|926577|scaffold_202138.1
Length=1706
Score = 867 bits (469), Expect = 0.0
Identities = 845/1025 (82%), Gaps = 31/1025 (3%)
Strand=Plus/Plus
Query 1155 GAGCCAGAAGAAGTCTCAATCTGGGGAATCCCACTTCTAGAGGACGAAAGATCCGACGTG 1214
||||| ||||||||||| |||||||| | ||||| || | ||||| ||||| ||||||
Sbjct 658 GAGCCGGAAGAAGTCTCGATCTGGGGCGTTCCACTACTCCAAGACGAGAGATCTGACGTG 717
Query 1215 ATCCTCCTC-AAATTCCTCCGTGCACGTGACTTCAAGGTCAAAGAAGCCTTCACGATGCT 1273
||||| | | ||||||||||||||| | |||||||||||||||||||| || || |||||
Sbjct 718 ATCCT-CACGAAATTCCTCCGTGCAAGAGACTTCAAGGTCAAAGAAGCTTTAACCATGCT 776
Query 1274 GAAAAACACCGTCCAATGGCGCAAAGAGAACAAGATCGACGACCTAGTCTCAGAAG-ATC 1332
|||||||||||||| ||||| ||||| ||||| |||||||| || | || |||| |
Sbjct 777 TAAAAACACCGTCCAGTGGCGTAAAGAAAACAAAATCGACGAGCTCG--TC-GAAGCCGC 833
Query 1333 TTGA-AGGAAGCGAGT---TT-GAGAAGTTGGTGTTCACTCACGGTGTCGACAAACAAGG 1387
|| | ||||||||| || |||||| ||||||| |||||||||| |||||| ||||
Sbjct 834 CGGAGAAGAAGCGAGTGAGTTCGAGAAGATGGTGTTTGCTCACGGTGTTGACAAAGAAGG 893
Query 1388 ACATGTCGTGATCTATAGCTCGTACGGTGAGTTTCAGAACAAGGAGA-TTTTCTCAGATA 1446
||| ||||||||||| ||||| |||||||| || |||||||| || | ||||||| || |
Sbjct 894 ACACGTCGTGATCTACAGCTCCTACGGTGAATTCCAGAACAAAGA-ACTTTTCTCCGACA 952
Query 1447 AAGAGAAGCTTAGCAAGTTTCTCAAATGGAGGATTCAGTTCCAAGAGAAGTGTGTGAG-G 1505
| |||||||||| ||| || ||||| |||||||||||| | ||||||||||||||||| |
Sbjct 953 AGGAGAAGCTTAACAAATTCCTCAACTGGAGGATTCAGCTACAAGAGAAGTGTGTGAGAG 1012
Query 1506 TCTCTTGACTTT-AG---CCCTGAGGCTAAGTCATCGTTCGTGTTCGTTAGTGACTTCAG 1561
|| |||| ||| || ||| || || || || |||||||| ||||| || ||||||||
Sbjct 1013 -CTATTGA-TTTCAGCAACCCCGAAGCGAAATCTTCGTTCGTATTCGTCAGCGACTTCAG 1070
Query 1562 GAACGCTCCTGGACT-TGGTCAGAGAGCATTGTGGCAGTTCATTAAACGCGCCGTTAAGC 1620
||||||||| ||||| | | ||||| |||||||| ||||| | |||||| ||||| |
Sbjct 1071 GAACGCTCCAGGACTCAAG-AAAAGAGCGTTGTGGCAATTCATCAGACGCGCTGTTAAAC 1129
Query 1621 AATTCGAAGATAACTATCCAGAGTTTGTCGCTAAAGAGCTGTTCATTAATGTCCCATGGT 1680
||||||| || || || || || || | ||| |||||||| ||||| |||||||||||||
Sbjct 1130 AATTCGAGGACAATTACCCCGAATTCGCCGCAAAAGAGCTATTCATCAATGTCCCATGGT 1189
Query 1681 GGTACATTCCTTACTACAAAACATTCGGAAGTATCATTACATCGCCAAGGACAAGGAGCA 1740
||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||
Sbjct 1190 GGTACATTCCTTACTACAAAACATTCGGATCTATCATCACATCGCCAAGGACTAGGAGCA 1249
Query 1741 AGATGGTCCTTTCTGGTCCATCCAAATCCGCTGAGACCATTTTCAAATACGTAGCTCCTG 1800
||||||||||| |||||||||||||||| || || || |||||||||||| |||||||||
Sbjct 1250 AGATGGTCCTTGCTGGTCCATCCAAATCTGCCGATACTATTTTCAAATACATAGCTCCTG 1309
Query 1801 AAGTAGTCCCGGTTAAGTATGGTGGACTCAGCAAAGATAGTCCATTCACCGTTGAAGATG 1860
|| |||||||||||| || |||||||| |||||||||| ||| || ||| ||| |
Sbjct 1310 AACAAGTCCCGGTTAAATACGGTGGACTTAGCAAAGATACTCCTTTGACCCAAGAA-ACC 1368
Query 1861 GAGTCACCGAGGCCGTAGTTAAATC-GACATCTAAATATACCATTGATTTGCCTGCTACA 1919
| | ||||| ||| | |||||| | | || | || || |||||||| ||||||||| |
Sbjct 1369 -A-TAACCGAAGCCATCGTTAAACCAG-CAGCCAACTACACCATTGAATTGCCTGCTTCT 1425
Query 1920 GAGGGTTCCACGCTCTCATGGGAGCTTAGGGTTTTGGGTGCGGACGTGAGCTACGGAGCT 1979
|||| || ||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1426 GAGGCTTGCACACTTTCGTGGGAGCTTAGGGTTTTGGGTGCTGACGTGAGCTACGGAGCT 1485
Query 1980 CAATTTGAGCCAAGCAATGAGGCAAGCTACACCGTGATTGTCTCTAAGAACC-GGAAGGT 2038
|| |||||||||| || ||||| |||||| | ||||| |||||||| |||| ||||| |
Sbjct 1486 CAGTTTGAGCCAACCACTGAGGGAAGCTATGCTGTGATCGTCTCTAA-AACCCGGAAGAT 1544
Query 2039 CGGTTTAACTGATGAACCGGTGATAACCGATTCTTTCAAGGCAAGTGAGGCGGGAAAGGT 2098
|| | ||| |||||||||||||||||||||||||| |||| |||| |||||||| |
Sbjct 1545 TGGGTCAACCGATGAACCGGTGATAACCGATTCTTTTAAGGTGGGTGAACCGGGAAAGAT 1604
Query 2099 CGTGATCACGATTGACAACCAAACCTTT-AAGAAGAAGAAGGTGCTCTACAGGTCCAAAA 2157
|||||||| ||||| ||||| || || ||||||||||| ||||||||||||| |||||
Sbjct 1605 TGTGATCACAATTGATAACCAGAC-TTCCAAGAAGAAGAAAGTGCTCTACAGGTTCAAAA 1663
Query 2158 CCCAA 2162
| |||
Sbjct 1664 CTCAA 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92254573390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5