BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G22630.1

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472502 jgi|Araly1|472502|fgenesh2_kg.1__2456__AT1G22630.1         708    0.0  


> Ahg472502 jgi|Araly1|472502|fgenesh2_kg.1__2456__AT1G22630.1
Length=497

 Score =  708 bits (383),  Expect = 0.0
 Identities = 479/520 (92%), Gaps = 28/520 (5%)
 Strand=Plus/Plus

Query  1    ATCCTTGTCAACATATTCCCTCCACATGATCCGTTTCAATAT-C-CACA--A-ACCACAA  55
            ||||| ||||||||||||| |||||||||||||||||||||| | ||||  | |||||||
Sbjct  1    ATCCTCGTCAACATATTCCATCCACATGATCCGTTTCAATATCCACACACCACACCACAA  60

Query  56   CCAAGCAAATTCTTTAGCTTTCTCACACCATCCATATTCACTATCACTTGTATGCATAGA  115
            ||||||||| |||||||||||||| |||||||||||||||||||  |    |  |     
Sbjct  61   CCAAGCAAACTCTTTAGCTTTCTCCCACCATCCATATTCACTAT--C----A--C-----  107

Query  116  TATGCATATAGATGTACATAGATATCTTACTTCCTAGTTCTAATTTGAGTTACAAAAATG  175
             |||    |  |||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  108  -ATG----T--ATG--CATAGATA-CTTACTTCCTAGTTCTAATTTGAGTTACAAAAATG  157

Query  176  TTGAAATTTCCACTTTGTTGCAGTGAGTTATCTTTAGAACCGAAGATTCTAGCTTTTGAA  235
            ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct  158  TTGAAATTTCCACTTTGTTGCAGTGAGTTATCTTTAGAACCCAAGGTTCTAGCTTTTGAA  217

Query  236  AGTCAGCTTGTTTCGGGGCGACGCGATACAATCAAAGTTTCTGCGGGAAAAATCGGAAAT  295
            || |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct  218  AGACAGCTTGTTTCGGGGCGACGCGATTCCATCAAAGTTTCTGCGGGAAAAATTGGAAAT  277

Query  296  TTCTCTCTTGGTTCGATATTCAAAAGTTGTGAGACTTGTGGAGCCAAAGGAGCAATTGAA  355
            ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct  278  TTCTCTCTTGGTTCGATATTCAAAAGTTGCGAGACTTGTGGAACCAAAGGAGCAATTGAA  337

Query  356  TGTCCCGGTTGCAAGGGAACAGGTAAAAATAAGAAGAACGGAAATATGTTTGAGAGGTGG  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  338  TGTCCCGGTTGCAAGGGAACAGGTAAAAATAAGAAGAACGGAAATATGTTTGAGAGGTGG  397

Query  416  AAATGTTTTGATTGTCAAGGATTTGGTATGAAGAGTTGTCCTAAATGTGGCAAGGGAGGC  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  398  AAATGTTTTGATTGTCAAGGATTTGGTATGAAGAGTTGTCCTAAATGTGGCAAGGGAGGC  457

Query  476  TTGACGCCTGAACAGAGAGGGGAACGATAGACTTATACTA  515
            ||||||||||||||||||||||||||||||| ||||||||
Sbjct  458  TTGACGCCTGAACAGAGAGGGGAACGATAGAGTTATACTA  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23521839789


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5