BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22630.1 Length=642 Score E Sequences producing significant alignments: (Bits) Value Ahg472502 jgi|Araly1|472502|fgenesh2_kg.1__2456__AT1G22630.1 708 0.0 > Ahg472502 jgi|Araly1|472502|fgenesh2_kg.1__2456__AT1G22630.1 Length=497 Score = 708 bits (383), Expect = 0.0 Identities = 479/520 (92%), Gaps = 28/520 (5%) Strand=Plus/Plus Query 1 ATCCTTGTCAACATATTCCCTCCACATGATCCGTTTCAATAT-C-CACA--A-ACCACAA 55 ||||| ||||||||||||| |||||||||||||||||||||| | |||| | ||||||| Sbjct 1 ATCCTCGTCAACATATTCCATCCACATGATCCGTTTCAATATCCACACACCACACCACAA 60 Query 56 CCAAGCAAATTCTTTAGCTTTCTCACACCATCCATATTCACTATCACTTGTATGCATAGA 115 ||||||||| |||||||||||||| ||||||||||||||||||| | | | Sbjct 61 CCAAGCAAACTCTTTAGCTTTCTCCCACCATCCATATTCACTAT--C----A--C----- 107 Query 116 TATGCATATAGATGTACATAGATATCTTACTTCCTAGTTCTAATTTGAGTTACAAAAATG 175 ||| | ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 108 -ATG----T--ATG--CATAGATA-CTTACTTCCTAGTTCTAATTTGAGTTACAAAAATG 157 Query 176 TTGAAATTTCCACTTTGTTGCAGTGAGTTATCTTTAGAACCGAAGATTCTAGCTTTTGAA 235 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 158 TTGAAATTTCCACTTTGTTGCAGTGAGTTATCTTTAGAACCCAAGGTTCTAGCTTTTGAA 217 Query 236 AGTCAGCTTGTTTCGGGGCGACGCGATACAATCAAAGTTTCTGCGGGAAAAATCGGAAAT 295 || |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| Sbjct 218 AGACAGCTTGTTTCGGGGCGACGCGATTCCATCAAAGTTTCTGCGGGAAAAATTGGAAAT 277 Query 296 TTCTCTCTTGGTTCGATATTCAAAAGTTGTGAGACTTGTGGAGCCAAAGGAGCAATTGAA 355 ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 278 TTCTCTCTTGGTTCGATATTCAAAAGTTGCGAGACTTGTGGAACCAAAGGAGCAATTGAA 337 Query 356 TGTCCCGGTTGCAAGGGAACAGGTAAAAATAAGAAGAACGGAAATATGTTTGAGAGGTGG 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 TGTCCCGGTTGCAAGGGAACAGGTAAAAATAAGAAGAACGGAAATATGTTTGAGAGGTGG 397 Query 416 AAATGTTTTGATTGTCAAGGATTTGGTATGAAGAGTTGTCCTAAATGTGGCAAGGGAGGC 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 398 AAATGTTTTGATTGTCAAGGATTTGGTATGAAGAGTTGTCCTAAATGTGGCAAGGGAGGC 457 Query 476 TTGACGCCTGAACAGAGAGGGGAACGATAGACTTATACTA 515 ||||||||||||||||||||||||||||||| |||||||| Sbjct 458 TTGACGCCTGAACAGAGAGGGGAACGATAGAGTTATACTA 497 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23521839789 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5