BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22640.1 Length=1077 Score E Sequences producing significant alignments: (Bits) Value Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 1421 0.0 Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 394 7e-109 Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1 122 4e-27 Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 93.5 3e-18 > Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 Length=980 Score = 1421 bits (769), Expect = 0.0 Identities = 931/1003 (93%), Gaps = 35/1003 (3%) Strand=Plus/Plus Query 1 CTACAGGAACTCTCTTCCTTGCaaaaaaaaTAAAACACTATTTCCTCCAAATACACGTAG 60 |||||||||||||||||||| | |||||||| | | | | | | | |||||| | Sbjct 1 CTACAGGAACTCTCTTCCTT-C-AAAAAAATTCCTC-CAAATACAT--ACATACAC--AT 53 Query 61 AGAGATACATATATACATATAGAGATCAACAAAGATGGGAAGATCACCATGCTGCGAGAA 120 ||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||| Sbjct 54 AGAGATACATACAT--ATATAGAGATC-A-AAAGATGGGAAGATCACCATGCTGCGAGAA 109 Query 121 AGCTCACATGAACAAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTTGTTGATTACAT 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 110 AGCTCACATGAACAAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTCGTTGATTACAT 169 Query 181 CCGTAAACACGGTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCTGGATTACAAAGATG 240 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 170 CCGTAAACACGGTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCCGGATTACAGAGATG 229 Query 241 TGGTAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 TGGTAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAA 289 Query 301 TTTTACTGAAGAAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTCGGTAACAAATG 360 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 290 TTTCACTGAAGAAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTTGGTAACAAATG 349 Query 361 GTCTTTAATAGCTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 GTCTTTAATAGCTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAA 409 Query 421 CACTCATATCAAGAGGAAGCTTCTCAGCCGTGGGATTGATCCAAACTCTCACCGTCTGAT 480 |||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| Sbjct 410 CACTCATATCAAGAGGAAGCTTCTTAGCCGTGGGATTGATCCAAACACTCATCGTCTGAT 469 Query 481 CAACGAATC--C-GTCGTGTCTCCGTCGTCTCTTCAAAACGATGTCGTTGAGACTATACA 537 ||||||||| | || ||||||||||||||||||||||||||||||||||||||| || | Sbjct 470 CAACGAATCGGCAGTAGTGTCTCCGTCGTCTCTTCAAAACGATGTCGTTGAGACTTTAAA 529 Query 538 TCTTGATTTCT-CTGGACCGGTTAAACCGGAACCGGTGCGTGAAGAGATTGGTATGGT-T 595 ||||||||| | | |||| |||||||||||||||||| || |||||||||||| ||| | Sbjct 530 TCTTGATTT-TGCCGGACAGGTTAAACCGGAACCGGTACGGGAAGAGATTGGT--GGTAT 586 Query 596 -AATAATTGTGA-GAGTAGTGGAACGACGTCGGAGAAGGATTATGGGAACGAGGAAGATT 653 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 TAATAATTGT-ACGAGTAGTGGAACGACGTCGGAGAAGGATTATGGGAACGAGGAAGATT 645 Query 654 GGGTGTTGAATTTGGAACTCTCTGTTGGACCGAGTTATCGGTACGAGTCGACTCGGAAAG 713 ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 646 GGGTGATGAATTTGGAACTCTCCGTTGGACCGAGTTATCGGTACGAGTCCACTCGGAAAG 705 Query 714 TGAGTGTTGTTGACTCGGCTGAGTCGACTCGACGGTGGGGTTCCGAGTTGTTT-GGAGCT 772 |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || Sbjct 706 TGAGTGTTGTTGACTCGGCTGAGTCGACTCGACGGTGGGGATCCGAGTTGTTTAGGA-CT 764 Query 773 CATGAGAGTGATGCGGTGTGTTTGTGTTGTCGGATTGGGTTGTTTCGTAATGAGTCGTGT 832 || ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 765 CA-GAG--TGATGCGGTGTGTTTGTGTTGTCGGATTGGGTTGTTTCATAATGAGTCGTGT 821 Query 833 CGGAATTGTCGGGTTTCTGATGTTAGAACTCATTAGAGAGTCAATCGAGAATTCTTTAGG 892 ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 822 CGGAATTGTCGGGGTTCTGATGTTAGAACTCATTAGAGAGTC----GAGAATTCTTTAGG 877 Query 893 AATCTTTTTATATATTTAGATCGTCAATTGTGttt-tttttttGTT-CACATTTGTTATG 950 ||||||||||||||||||||| || ||||||| || ||||||| || ||||||||||||| Sbjct 878 AATCTTTTTATATATTTAGATTGTTAATTGTGCTTCTTTTTTTCTTTCACATTTGTTATG 937 Query 951 TAAC--ATCAAGTAAGAAACTAGCATAATTATTTGATGGCAAA 991 |||| ||||||||||||||||| ||||||||||||||||||| Sbjct 938 TAACGCATCAAGTAAGAAACTAGGATAATTATTTGATGGCAAA 980 > Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 Length=850 Score = 394 bits (213), Expect = 7e-109 Identities = 336/397 (85%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 95 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 154 ||||||||||| || || || || |||||||||| |||||||||||||||||||||||| Sbjct 47 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 106 Query 155 GAAGATCAGCTTCTTGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCTCTC 214 |||||||| | ||| || ||||| || ||||| |||||||||||||| ||||||||||| Sbjct 107 GAAGATCAACGTCTCGTCGATTATATTCGTAATCACGGTGAAGGTTGTTGGCGATCTCTT 166 Query 215 CCTCGCGCCGCTGGATTACAAAGATGTGGTAAGAGTTGTAGATTGAGATGGATGAATTAT 274 ||| |||||||||| | |||||||| |||||||||||||||||||| ||||| Sbjct 167 CCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTAC 226 Query 275 CTAAGACCAGATCTCAAAAGAGGCAATTTTACTGAAGAAGAAGATGAACTCATCATCAAG 334 || | || ||||| ||| | || ||||||||||| ||||||||| || |||||||||| Sbjct 227 CTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCATCATCAAA 286 Query 335 CTCCATAGCTTGCTCGGTAACAAATGGTCTTTAATAGCTGGGAGATTACCAGGAAGAACA 394 ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 287 CTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACA 346 Query 395 GATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTCAGCCGTGGG 454 ||||| || |||||||| ||||||||||||||||| || || |||||||| || | |||| Sbjct 347 GATAATGAAATCAAGAATTATTGGAACACTCATATTAAAAGAAAGCTTCTTAGTCATGGG 406 Query 455 ATTGATCCA-AACTCTCACCGTCTGATCAACGAATCC 490 ||||||||| || |||| |||| ||| ||||| ||| Sbjct 407 ATTGATCCACAAA-CTCATCGTCCGATTAACGATTCC 442 > Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1 Length=1186 Score = 122 bits (66), Expect = 4e-27 Identities = 286/387 (74%), Gaps = 36/387 (9%) Strand=Plus/Plus Query 95 ATGGGAAGATCACCATGCTGCGAGAA-AGCTCACATGAACAAAGGAG-CTTGGACTA-AA 151 |||||||| ||||| || |||||||| | | | | || ||||| | | ||||| | Sbjct 96 ATGGGAAGGTCACCTTGTTGCGAGAAGAACGGGC-TCAAGAAAGG-GCCATGGAC-ATCT 152 Query 152 GAAGAAGATCAGCTTCTTGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCT 211 |||||||| ||| |||||||| || |||| ||||| ||| | ||| |||| || | Sbjct 153 GAAGAAGACCAGAAGCTTGTTGACTATATCCACAAACATGGTTATGGTAACTGGAGAACC 212 Query 212 CTCCCTC-GCGCCGCTGGATTACAAAGATGTGGTAAGAGTTGTAGATTGAGATGGA-TGA 269 ||||| | ||||| || ||||||||||| || |||||||| || || |||| | | Sbjct 213 CTCCC-CAAAAATGCTGGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACT-A 270 Query 270 ATTATCTAAGACCAGATCTCAAA-AGAGGCAA---T-T-TTACTGAAGAAGAAGATGAAC 323 ||||||| |||||||| | ||| |||| || | | || | || |||||||| ||| Sbjct 271 ATTATCTCCGACCAGATAT-AAAGCGAGG-AAGGTTCTCTTTC-GAGGAAGAAGA--AAC 325 Query 324 TCATCA-TCAAGCTCCATAGCTTGC-TCGGTAACAAATGGTCTTTAATAGCTGG-GAGAT 380 ||| | || |||| |||||||| | | || ||||| ||||| || || || | | Sbjct 326 -CATTATTC-AGCTTCATAGCTT-CTTAGGAAACAAGTGGTCGGCGATTGC-GGCCCGTT 381 Query 381 TACCAGGAAGAACAGATAACGAGATCAAGAACTAT-TGGAACACTCATATCAAGAG-GAA 438 | || |||||||||||||||||||||||||||| | |||||||||||||| |||| ||| Sbjct 382 TGCCTGGAAGAACAGATAACGAGATCAAGAACT-TCTGGAACACTCATAT-AAGAAAGAA 439 Query 439 GCTT-CTCAGCCGTGGG-ATTGATCCA 463 | || || || |||| ||||||||| Sbjct 440 G-TTACTTAGAA-TGGGGATTGATCCA 464 > Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 Length=1149 Score = 93.5 bits (50), Expect = 3e-18 Identities = 87/104 (84%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 323 CTCATCAT-CAAGCTCCATAGCT-TGCTCGGTAACAAATGGTCTTTAATAGCTG-GGAGA 379 |||||||| ||| |||||| || |||||| ||||||||| || || |||| || Sbjct 250 CTCATCATACAA-CTCCAT-TCTCAGCTCGGCAACAAATGGGCTCGCATGGCTGCTCAG- 306 Query 380 TTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACAC 423 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 307 TTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACAC 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40105308684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5