BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22730.1
Length=2574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921297 jgi|Araly1|921297|scaffold_102578.1 3491 0.0
> Ahg921297 jgi|Araly1|921297|scaffold_102578.1
Length=2120
Score = 3491 bits (1890), Expect = 0.0
Identities = 2047/2124 (96%), Gaps = 5/2124 (0%)
Strand=Plus/Plus
Query 203 GATTCGAGATAGAGTCTAAAATGGAGCACCAAGACCTTACAGATTCGAGAAA-GGATCCT 261
||||||||| |||||||||||||||||||||||| || | ||||||| ||| |||||||
Sbjct 1 GATTCGAGAGAGAGTCTAAAATGGAGCACCAAGAAGTTGCTGATTCGA-AAACGGATCCT 59
Query 262 CTTTGCATTTCTCAATTGAAAATTTCTTCTTCTTCTCTCGACCCATTGCCTCAGGCCAAC 321
||||||||||||||||||||||| |||||||| ||| | ||||||||||| ||||| |||
Sbjct 60 CTTTGCATTTCTCAATTGAAAATATCTTCTTC-TCT-T-GACCCATTGCCACAGGCGAAC 116
Query 322 ATGGCAGAGGATTTAACAAAGAGTCGTAGACATTCACCTATAAAAGTGGAAGGGAGTGAA 381
||| ||| ||||||| ||||||| |||||||||||||||||||||| |||||||||||
Sbjct 117 ATGACAGCGGATTTATTGAAGAGTCATAGACATTCACCTATAAAAGTGCAAGGGAGTGAA 176
Query 382 GAAACTTGGGGAGTAGAAGATGATGATGACCTTACTGACCCTATTTTTGATACCATTGAG 441
|||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 177 GAAACTTGGGGAGTAGAAGATGATGATGACCTCACTGACCCTAATTTTGATACCGTTGAG 236
Query 442 GGCAATGGACATTCAGATCCAACAAGCTGCTTCGATGCTGATTTAAGTGAGTACAAAAAG 501
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 GGCAATGGACATTCAGATCCAACTAGCTGCTTCGATGCTGATTTAAGTGAGTACAAAAAG 296
Query 502 AAGGCCACAGTAATCGTTGAGGAATACTTTGGCACCAATGATGTTGTCTCTGTTGTTAAT 561
|||||||| ||||| || |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 297 AAGGCCACGGTAATTGTGGAGGAATACTTTGGCACCAATGATGTTGTCTCAGTTGCTAAT 356
Query 562 GAACTAAAGGAGCTTGGAATGGCTGAGTACCGTTATTATTTTGTCAAGAAGTTAGTCTCC 621
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 357 GAACTAAAGGAGCTTGGAATGCCTGAGTACCGTTATTATTTTGTCAAGAAATTAGTCTCC 416
Query 622 ATGGCTATGGATAGACATGACAAAGAGAAAGAAATGGCTGCTTTTCTCCTCTCTACCCTT 681
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 417 ATGGCTATGGATAGACATGACAAAGAGAAAGAAATGGCTGCTTTTCTCCTGTCTACGCTT 476
Query 682 TATGCCGACGTCATTGATCCCCCAGAAGTTTACAGAGGTTTCAACAAACTGGTCGCTTCT 741
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 477 TATGCCGACGTCATTGATCCCCCGGAAGTTTACAGAGGTTTTAACAAACTGGTGGCTTCT 536
Query 742 GCTGATGATTTATCTGTTGATATTCCCGATGCAGTTGATGTTCTTGCTGTCTTTGTGGCT 801
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCTGATGATTTATCTGTAGATATTCCCGATGCAGTTGATGTTCTTGCTGTCTTTGTGGCT 596
Query 802 CGGGCAATTGTTGACGACATTCTTCCTCCTGCGTTTCTCAAGAAGCAAATGAAATTGCTG 861
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 597 CGGGCAATTGTTGACGACATTCTTCCACCTGCGTTTCTGAAGAAACAAATGAAATTGCTA 656
Query 862 CCAGATAACTCCAAAGGTGTTGAGGTTTTGAGAAAGGCTGAGAAGAGCTATCTAGCGACT 921
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 CCAGATCACTCCAAAGGTGTTGAGGTTTTGAGAAAGGCCGAGAAGAGCTATCTAGCGACT 716
Query 922 CCGCTTCATGCTGAAGTTGTTGAGAAGAGATGGGGAGGGACTGATAATTGGACTGCTGAG 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCGCTTCATGCTGAAGTTGTTGAGAAGAGATGGGGAGGGACTGATAATTGGACTGCTGAG 776
Query 982 GATGTGAAAGCTAGAATTAACGACTTGTTGAAAGAGTATGTCATGAGTGGAGACAAAAAA 1041
||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 777 GATGTGAAAGCAAGAATAAACGACTTGCTGAAAGAGTATGTGATGAGTGGAGACAAAAAA 836
Query 1042 GAAGCTTTTAGATGCATCAAAGGATTGAAAGTTCCTTTCTTTCATCATGAGATTGTCAAA 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAAGCTTTTAGATGCATCAAAGGATTGAAAGTTCCTTTCTTTCATCATGAGATTGTCAAA 896
Query 1102 CGAGCACTGATCATGGCAATGGAAAGGCGAAAAGCTCAAGTCAGGCTGCTAGATCTGTTG 1161
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 897 CGAGCACTGATTATGGCAATGGAAAGGCGAAAAGCTGAAGTCAGGCTGCTAGATCTGTTA 956
Query 1162 AAAGAAACGATTGAGGTTGGTCTCATAAACTCCACTCAGGTGACAAAAGGGTTTAGCAGA 1221
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 957 AAAGAAACGATTGAGGTTGGTCTCATAAACTCCACTCAAGTAACAAAAGGGTTTAGCAGA 1016
Query 1222 ATCATTGATTCAATCGAAGATTTGTCTCTTGACATACCAGACGCACGCCGTATTTTACAG 1281
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1017 ATCATTGATTCAATTGAAGATTTGTCTCTTGACATACCAGATGCACGCCGTATATTACAG 1076
Query 1282 TCTTTCATCTCTAAAGCGGCTTCTGAAGGATGGTTATGTGCTTCTTCTCTGAAATCACTC 1341
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCTTTCATCTCTAAAGCAGCTTCTGAAGGATGGTTATGTGCTTCTTCTCTGAAATCACTC 1136
Query 1342 TCTGCTGATGCAGGAGAAAAGTTACTTGAAAACTCCAGCGCCAATGTTTTTAAAGACAAG 1401
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCCGCTGATGCAGGAGAAAAGTTACTTGAAAACTCCAGCGCCAATGTTTTTAAAGACAAG 1196
Query 1402 GCGAAGTCGATCATCCGAGAGTATTTCCTTTCAGGTGACACTTCAGAGGTCGTACATTGT 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GCGAAGTCGATCATCCGAGAGTATTTCCTTTCAGGTGACACTTCAGAGGTCGTACATTGT 1256
Query 1462 CTAGACACCGAATTGAATGCATCTTCGAGTCAGCTACGCGCAATCTTTGTCAAATATCTG 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTAGACACCGAATTGAATGCATCTTCGAGTCAGCTACGCGCAATCTTTGTCAAATATCTG 1316
Query 1522 ATAACTCTAGCAATGGACAGGAAGAAAAGAGAGAAGGAGATGGCTTGTGTGCTCGTCTCT 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATAACTCTAGCAATGGACAGGAAGAAAAGAGAGAAGGAGATGGCTTGTGTGCTCGTCTCT 1376
Query 1582 ACTCTTGGTTTCCCTCCCAAAGATGTCAGAAGCGCATTCTCGATGCTCATAGAATCTGCA 1641
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1377 ACTCTTGGTTTCCCTCCAAAAGATGTCAGAAACGCATTCTCGATGCTCATAGAATCTGCA 1436
Query 1642 GACGACACTGCTTTGGACAACCCAGTGGTTGTTGAAGACCTTGCCATGTTCTTAGCAAGA 1701
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 GACGACACGGCTTTGGACAACCCAGTGGTTGTTGAAGACCTTGCCATGTTCTTAGCCAGA 1496
Query 1702 GCTGTGGTTGACGAGGTGTTAGCTCCACGGGATTTGGAAGAAGTGTTAAATCAGACTCCC 1761
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1497 GCTGTGGTTGACGAGGTGTTACCTCCACGGGATTTGGAAGAAGTGTTAAACCAGACTCCC 1556
Query 1762 GAGGCAGGCTCAAGTGTGGGCGAGAAAGTGATTCAAATGGCGAAAACATTGCTGAAAGCA 1821
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GAGGCAGGCTCAAGTGTGGGAGAGAAAGTGATTCAAATGGCGAAAACATTGCTGAAAGCA 1616
Query 1822 CGTCTTTCCGGTGAAAGGATCTTACGTTGCTGGGGAGGAGGAGGAATTGAGACAAACTCG 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CGTCTTTCCGGTGAAAGGATCTTACGTTGCTGGGGAGGAGGAGGAATTGAGACAAACTCG 1676
Query 1882 CCGGGATCCACAGTGAAGGAAGTGAAAGAGAAGATCCAGATTCTTCTAGAAGAGTATGTC 1941
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CCAGGATCCACAGTGAAGGAAGTGAAAGAGAAGATCCAGATTCTTCTAGAAGAGTATGTC 1736
Query 1942 TCTGGTGGAGACCTCAGAGAAGCTAGTAGGTGCGTAAAGGAACTAGGAATGCCGTTTTTT 2001
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1737 TCTGGTGGAGACCTCAGAGAAGCTAGTAGGTGCGTGAAGGAACTGGGAATGCCGTTTTTT 1796
Query 2002 CACCACGAAGTAGTGAAGAAGTCAGTAGTGAGGATCATAGAAGAGAAGGAGAACGAGGAA 2061
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 CACCATGAAGTAGTGAAGAAGTCAGTAGTGAGGATCATAGAAGAGAAGGAGAACGAGGAA 1856
Query 2062 CGGTTATGGAAGCTACTAAAAGTGTGTTTTGATTCAGGACTAGTGACGATATATCAGATG 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 CGGTTATGGAAGCTACTAAAAGTGTGTTTTGATTCAGGACTAGTGACGATATATCAGATG 1916
Query 2122 ACTAAAGGGTTTAAAAGAGTTGATGAATCACTTGAAGATCTGTCTTTGGATGTCCCTGAT 2181
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1917 ACTAAAGGGTTTAAAAGAGTTGATGAATCGCTTGAAGATCTGTCTTTGGATGTCCCTGAT 1976
Query 2182 GCTGCCAAAAAGTTTTCAAGTTGCGTTGAAAGAGGCAAGCTTGAAGGGTTCTTGGACGAA 2241
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1977 GCTGCGAAAAAGTTTTCAAGTTGCGTCGAAAGAGGCAAGCTTGAAGGGTTCTTAGACGAA 2036
Query 2242 TCATTCGCTTCTGAGGATTCGCAAAGTAAGAAACAGAACGGCTCGTCTTCTTCCTCTGGA 2301
|||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 2037 TCATTCGCTTGTGAGGAATCACAAAGTAAGAAACAGAACGGCTCGTCTTCTTCGTCTGGA 2096
Query 2302 TGATAACATTTGAGCACCATACCT 2325
||||||||||||||||||| ||||
Sbjct 2097 TGATAACATTTGAGCACCAAACCT 2120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97053944260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5