BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22740.1 Length=973 Score E Sequences producing significant alignments: (Bits) Value Ahg912129 jgi|Araly1|912129|Al_scaffold_0001_2383 981 0.0 > Ahg912129 jgi|Araly1|912129|Al_scaffold_0001_2383 Length=618 Score = 981 bits (531), Expect = 0.0 Identities = 591/619 (95%), Gaps = 8/619 (1%) Strand=Plus/Plus Query 148 ATGTCGACGCGAAGACGAACTTTACTCAAAGTTATAATTCTTGGAGACAGCGGGGTTGGC 207 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGTCGATGCGAAGACGAACTTTACTCAAAGTTATCATTCTTGGAGACAGCGGGGTTGGC 60 Query 208 AAAACATCGTTGATGAATCAATATGTGAATAACAAGTTTAGTCAACAGTACAAAGCTACG 267 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 AAAACATCGTTGATGAATCAATATGTGAATAACAAGTTTAGTCAGCAGTACAAAGCTACG 120 Query 268 ATCGGAGCTGATTTTGTCACTAAGGAGCTTCAAATTGATGACAGGCTTGTCACATTGCAA 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 ATCGGAGCTGATTTTGTCACTAAGGAGCTTCAAATTGATGACAGGCTTGTCACATTACAA 180 Query 328 ATATGGGACACTGCTGGGCAAGAGAGGTTTCAAAGTCTTGGTGTTGCTTTCTATAGAGGT 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATATGGGACACTGCTGGGCAAGAGAGGTTTCAAAGTCTTGGTGTTGCTTTCTATAGAGGT 240 Query 388 GCAGATTGTTGTGTTCTTGTCTATGATGTGAATCACTTGAAGTCATTTGAATCTCTCGAC 447 ||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||| Sbjct 241 GCAGATTGTTGTGTTCTTGTCTATGATGTCAATTACTTGAAGTCGTTTGATTCTCTCGAC 300 Query 448 AATTGGCACAACGAGTTTCTTACACGGGCTAGTCCACGTGACCCAATGGCATTCCCTTTT 507 ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 301 AATTGGCACGACGAGTTTCTTAAACGGGCTAGTCCACGTGATCCAATGGCATTCCCTTTT 360 Query 508 ATACTTCTTGGTAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGAGAAG 567 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 ATACTTCTCGGTAATAAGGTTGATATTGATGGAGGAAATAGCCGAGTGGTATCTGATAAG 420 Query 568 AAGGCTAGAGAATGGTGTGCTGAAAAGGGAAACATAGTCTATTTCGAGACATCGGCTAAA 627 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAAGCTAGAGAATGGTGTGCTGAAAAGGGAAACATAGTCTATTTCGAGACATCGGCTAAA 480 Query 628 GAAGA-TTACAATGTCGATGACTCCTTCTTGTGCATCACAAAACTTGCCCTTGCAAATGA 686 || || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 481 GA-GAATTACAATGTCGATGACTCTTTCTTGTGCATCACAAAACTTGCCCTTGCCAATGA 539 Query 687 ACGCGACCAAGATATATATTTCCA-G-----CCAGATACTGGTTCGGTGCCTGAGCAAAG 740 |||||||||||||||||||||||| | ||||| |||||||||| | |||| ||||| Sbjct 540 ACGCGACCAAGATATATATTTCCAAGGGATTCCAGAGACTGGTTCGGAGTCTGAACAAAG 599 Query 741 AGGAGGTTGTGCTTGCTGA 759 ||||||||||||||||||| Sbjct 600 AGGAGGTTGTGCTTGCTGA 618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36140525316 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5