BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22750.4
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472519 jgi|Araly1|472519|fgenesh2_kg.1__2473__AT1G22750.4 1400 0.0
> Ahg472519 jgi|Araly1|472519|fgenesh2_kg.1__2473__AT1G22750.4
Length=978
Score = 1400 bits (758), Expect = 0.0
Identities = 903/968 (93%), Gaps = 29/968 (3%)
Strand=Plus/Plus
Query 11 CTTTTCGATTtctcttcctctcgtctctctctct-GT--TAACAATGGCGACGACTAGTT 67
|||||||||||| ||||||||||||| ||||| | || ||||||||||||||| |||||
Sbjct 1 CTTTTCGATTTCGCTTCCTCTCGTCTTTCTCTGTGGTGGTAACAATGGCGACGAATAGTT 60
Query 68 TAGTGACCGGACTAAAAGTG-GTATTACCGGTTATGTTCTGTCTGATGCTAGCGACTCTT 126
|||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 61 TAGTAACCGGACTAAAAGTGACT-TTACCGGTTATGTTCTGTGTGATGCTAGCGACTCTT 119
Query 127 GTCTACACCATCATCACCGATGGCCTTCCTTTACCTGATCGTCAAGATGTCTTCACACCA 186
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTCTACACCATTATCAACGATGGCCTTCCTTTACCTGATCGTCAAGATGTCTTCACACCA 179
Query 187 TGGTTCGTTACGACAATTTTGGATTTCTACATTAATC-TTGTACCTATAGCGGTTTGGAT 245
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 180 TGGTTCGTTACGACAATTCTGGATTTCTACATTAA-CGTTGTACCTATAGCGGTTTGGAT 238
Query 246 TGTGTATAAGGAGTCTACATGGTCTGGTTCAATACTTTGGACCATTTTGCTCATCATTTT 305
||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 239 TGTGTATAAGGAGTCTACATGGTCTGGCTCAATACTTTGGACCATTTTGCTCTTAATTTT 298
Query 306 TGGCAGCCTCACGACATGTGTGTATCTGTTTCTGCAACTTCTCAAGCTGACAAATCAAGA 365
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 TGGCAGCCTCACGACATGTGTGTATGTGTTTCTGCAACTTCTCAAGCTGACAAATCAAGA 358
Query 366 AGCTTCAGAAGATCCTATGTACTATTTGTTACTTCGAGATTCAATCAAGGATGGAGTTGG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 AGCTTCAGAAGATCCTATGTACTATTTGTTACTTCGAGATTCAATCAAGGATGGAGTGGG 418
Query 426 TCTGAGAGACAAGAATTCACTTGTTGTCACTGCAAGATTTGTGTTTGGTGCCTTAGGATG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTGAGAGACAAGAATTCACTTGTTGTCACTGCAAGATTTGTGTTTGGTGCCTTAGGATG 478
Query 486 TGTGATGCTAGGAGCTTTGGTTTACACTTGCTTCACTTATGGTTCTCCTTTCCACATGGA 545
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 479 TGTGATGCTAGGAGCTTTGATCTACACTTGCTTGACTTATGGTTCTCCTTTCCACATGGA 538
Query 546 GCTTCTATACCCGTGGATGGTGGTTTTATTGGTTAACTTCTACATTGATGTTGCTGTCTT 605
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 539 GCTTCTATACCCGTGGATGGTGGTTTTATTGGTTAACTTCTACATTAATGTTGCAGTCTT 598
Query 606 ATCAGTTTGGGTTGTCTATAAAGAATCTAGTTTGATCATTGGAATTCTATGGGTTGCTCT 665
|||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 599 ATCAGTTTGGGTTGTCTATAAAGAATCTAGTTGGATCGTTGGAATTCTCTGGGTTGCTCT 658
Query 666 ATTGATAGGTCTTGGCAGCGTTGGCACGAGCGCAGTCATTGTCGTGCAGCTATTCCGTCT 725
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 659 ATTGATAGGTCTTGGCAGCGTTGGCACGAGCGTAGCCATTGTCGTGCAGCTATTCCGTCT 718
Query 726 GTCTCCTCTCGACCCGCTCTACCTCGTTCTAGTGAACAACAGCAATCGGGCTGGAGATAT 785
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 ATCTCCTCTCGACCCGCTCTACCTCGTTCTGGTGAACAACAGCAATCGGGCTGGAGATAT 778
Query 786 GTACGAGCGCACTCATTCTGCGGCTTTGCGCATAATGTGAAGCTTTGTCATTTCATTTTT 845
||| ||||||||||||||||||| |||||| || ||||||||||||| ||||| |||||
Sbjct 779 GTATGAGCGCACTCATTCTGCGGTTTTGCG--TA-TGTGAAGCTTTGTGATTTCGTTTTT 835
Query 846 AACATTTT-ACCACAAAAGTTCAAAACATATTTTTATCTACATTTTAAGTTTGTATGTTT 904
| | |||| |||||||||||||||| | || || |||| | |||||||||||
Sbjct 836 A-C-TTTTCACCACAAAAGTTCAAA-C-TAC----AT-TACA----A-GTTTGTATGTTC 881
Query 905 CATAGTTTTCTTCTGTATATACTTTCTCTTATGTGACGA---CAATTACTTATGTACTTA 961
||||||||||||||||||||| |||||||||||||| || |||||||||||||| | |
Sbjct 882 CATAGTTTTCTTCTGTATATAGTTTCTCTTATGTGA-GAAAACAATTACTTATGTAATCA 940
Query 962 ACTTTTTT 969
||||||||
Sbjct 941 ACTTTTTT 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37741687830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5