BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22850.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472530 jgi|Araly1|472530|fgenesh2_kg.1__2484__AT1G22850.1 1537 0.0
> Ahg472530 jgi|Araly1|472530|fgenesh2_kg.1__2484__AT1G22850.1
Length=1259
Score = 1537 bits (832), Expect = 0.0
Identities = 1140/1276 (89%), Gaps = 71/1276 (6%)
Strand=Plus/Plus
Query 29 TCATCATCATCTCCATTAAAGCTGCTTAAGAATGCGCAGCC-T-C-ACTCTAGGTCTGAc 85
||||||||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||
Sbjct 19 TCATCATCATCTCCATTAAAGCTGCTTAAAAATGCGCAGCCTTACTACTCTGGGTCTGAC 78
Query 86 tctcagatcctcctcctcctcttctcttccattcacctgcaactcccgcttctgctctcc 145
||||||||||||||||||||| |||||||||||||||||||||| |||| | | || | |
Sbjct 79 TCTCAGATCCTCCTCCTCCTCATCTCTTCCATTCACCTGCAACTTCCGC-T-T-CT-T-C 133
Query 146 tcctcctccttcttcGTCCTTTAGACTCTACAAACGATTCCATTTCCTTAAACCATGCTC 205
| ||||||||||||| | | |||||||| || |||||| ||||||||||||||||| ||
Sbjct 134 T-CTCCTCCTTCTTC-T--TCTAGACTCTGCAGACGATTTCATTTCCTTAAACCATGTTC 189
Query 206 TTCCCTAAAGCAAACCAAGAAGAAGAAGCAACAGTCTCTCCCATCTACCGCTCCGCCTCC 265
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 190 TTCCCTCAAGCAAACCAAGAAGAAGAAGCAACAGTCTCTCCCATCCACCGCCCCGCCTCC 249
Query 266 TCAGAGTCTCCGGTGGTTCTTCAATTCTAAATCCACTAATGATGAAAACGACGAAGATGA 325
||||||||||||||||||||||||| | ||||||| | ||||||| ||||||||||||||
Sbjct 250 TCAGAGTCTCCGGTGGTTCTTCAATCCCAAATCCAGTGATGATGATAACGACGAAGATGA 309
Query 326 TGTTAAGTCTGAGAGCGATGATGATGGCGGATCGGAAGGTGATGCTGCTATTAAGGGTAC 385
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 310 TGCTAAGTCTGAGAGCGATGACGATGGCGGATCGGAAGGTGATGCTGCTATTAAGGGTAC 369
Query 386 TATCTTAGCCGGAGTTTTGTTGATTGGTACTGTTGGTGGATTCGCCGGCGTTGGATATGT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TATCTTAGCCGGAGTTTTGTTGATTGGTACTGTTGGTGGATTCGCCGGCGTTGGATATGT 429
Query 446 CTACAGGGATCAGATCAATACTTTCCTTACTCAATTCTCCACTTACATCGAAGGTTATGG 505
||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 430 CTATAGGGATCAGATTAATACGTTCCTCACTCAATTCTCCACTTACATCGAAGGTTATGG 489
Query 506 TACGGCTGGGTATGCGT-TATTCATTGCCGTCTATGCTGGGCTT---G--AG-------A 552
||||||||||||||| | | ||||||||||| |||||||| ||| | || |
Sbjct 490 TACGGCTGGGTATGC-TCTGTTCATTGCCGTTTATGCTGGCCTTGAGGCAAGCTTTTTCA 548
Query 553 TA------C------TAGCCATTCCAGCTCTCCCATTGACGATGTCGGCTGGTCTTCTCT 600
|| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 549 TACTCTTTCATATATTAGCCATTCCGGCTCTCCCATTGACGATGTCGGCTGGTCTTCTCT 608
Query 601 TCGGTCCACTCATTGGCACTATCATAGTTTCTATCAGTGGAACTATGGCTGCTAGTGTTG 660
| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 609 TTGGTCCCCTCATTGGTACTATCATAGTTTCTATCAGTGGAACAATGGCTGCTAGTGTTG 668
Query 661 CTTTCTTAATTGCTAGATATTTTGCCCGAGAGCGCATCCTTAAGTTAGTTGAAGACAACA 720
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTTTCTTAATTGCCAGATACTTTGCCCGAGAGCGCATCCTTAAGTTAGTTGAAGACAACA 728
Query 721 AGAAGTTCCTCGCCATTGATAAAGCGATTGGTGAAAATGGGTTTAGAGTTGTTACTCTCC 780
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 729 AGAAGTTCCTTGCCATTGATAAAGCAATTGGTGAAAATGGGTTTAGAGTTGTTACTCTGC 788
Query 781 TTCGGCTAAGCCCTCTACTTCCTTTCTCTCTTGGCAATTACCTGTACGGGTTGACGTCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 789 TTCGGCTAAGCCCTCTACTTCCTTTCTCTCTTGGCAATTACCTGTACGGGTTGACATCTG 848
Query 841 TGAAGTTTGTGCCTTATGTATTAGGAAGCTGGTTGGGTATGCTTCCAGGCTCTTGGGCTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TGAAGTTTGTGCCTTATGTATTAGGAAGCTGGTTGGGTATGCTTCCAGGCTCTTGGGCTT 908
Query 901 ATGTCAGCGCCGGGGCTTTTGGACGAGCAATCATTCAAGAAGAATCTAATGTTGGCTTGC 960
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 ATGTCAGTGCTGGGGCTTTTGGACGAGCAATCATTCAAGAAGAATCTAATGTTGGCTTGC 968
Query 961 CTGGAGGAAACGGCCAGCTTTTAACTCTCGGGGTGGGTCTGTTGGTTACTGCATTGGCTG 1020
|||||||||| |||||||| ||||| |||||||| |||||| ||||||||||||||||||
Sbjct 969 CTGGAGGAAATGGCCAGCTCTTAACGCTCGGGGTAGGTCTGCTGGTTACTGCATTGGCTG 1028
Query 1021 GAACATATGTGACAAGCCTTGCAAAGGATGCTATAAAGGATATTGATGATGATGAGAAG- 1079
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1029 CAACATATGTGACAGGCCTTGCAAAGGATGCTATAAAGGATATTGATGATGATGATAAGT 1088
Query 1080 AGAGATGCAAAGTAGGAAACAAGCCAGCGATTGGATAATGGTTTTGACTCTCTAGGATTT 1139
||||| | | | | | |||| | || | | | | ||| || ||||||||||||
Sbjct 1089 AGAGA-G-AGA-T-GCAAACTA---AG--A----A-A-T--TTT-GATTCTCTAGGATTT 1130
Query 1140 GTAAAACGCC--AACAGAGTATCATGT-ATCAACGTTAAATGTATTGCTCCATTATT--- 1193
|||||| || ||||||||||||| | || | | | || | |||| |||||||||
Sbjct 1131 GTAAAAAACCTTAACAGAGTATCATATCATGA-CATCAA-T--ATTGTTCCATTATTATT 1186
Query 1194 GTTAATAGTTGATATATAATTC-GAATCTTTTTTGTCCTTCAAATTTAAGCACCAATAAT 1252
||| ||||||||||||||||| ||||||||||||| ||| ||| |||||| ||||| |
Sbjct 1187 GTTCATAGTTGATATATAATTTTGAATCTTTTTTGTTCTTTAAAATTAAGCTGCAATA-T 1245
Query 1253 AAGTGAGAAAATGCTT 1268
||||||||||||||
Sbjct 1246 --GTGAGAAAATGCTT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5