BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G22910.3
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921317 jgi|Araly1|921317|scaffold_102598.1 1175 0.0
> Ahg921317 jgi|Araly1|921317|scaffold_102598.1
Length=800
Score = 1175 bits (636), Expect = 0.0
Identities = 748/800 (94%), Gaps = 15/800 (2%)
Strand=Plus/Plus
Query 204 gatcggagagGAAAAAATGGCGGGAGGAATAGGGCTGGGAGACACGACATACACGAAGGT 263
||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 7 GATCGGAGA--AAAAAATGGCGGGAGGAATAGGGTTAGGAGACACGACGCACACGAAGGT 64
Query 264 GTTTGTGGGAGGATTAGCTTGGGAGACGCATAAGGAGACGATGAAGAAGCACTTTGAGCA 323
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 65 GTTTGTGGGAGGATTAGCTTGGGAGACACATAAGGAGACGATGAAGAAGCACTTTGAGCA 124
Query 324 GTTTGGAGAGATTTTGGAAGCCGTAGTCATCACCGACAAGGCCTCCGGTAGATCCAAGGG 383
||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||
Sbjct 125 GTTTGGAGAGATTTTGGAAGCTGTGGTTATCACCGACAAGGCCTCTGGCAGATCCAAGGG 184
Query 384 CTACGGATTCGTGACATTCAGGGAAGCGGAGGCGGCGAGGAGTGCTTGTGTGGATGCTAC 443
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 185 CTACGGATTTGTGACATTCAGGGAAGCGGAGGCGGCGAGGAGAGCTTGTGTGGAGGCTAC 244
Query 444 TCCGGTGATCGACGGGAGAAGAGCAAATTGCAACCTCGCCTCTCTCGGTCTTCAAAGATC 503
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 245 TCCGGTGATCGACGGGAGAAGAGCAAATTGCAACCTTGCCTCTCTCGGTCTTCAAAGATC 304
Query 504 CAAACCCTCCACTCCTAACCATGGAGGAGGAGGCAGGATTAACAATATGAGAGTGATGAT 563
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CAAACCATCCACTCCTAACCATGGAGGAGGAGGCAGGATTAACAATATGAGAGTGATGAT 364
Query 564 GAGCACAATGCAGACTGGTTTTGGaccacctccaccaccac-a-a-ccacccaccTTCAC 620
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
Sbjct 365 GAGCACAATGCAGACTGGTTTTGGACCACCTCCACCACCACCACAACCACCCACCTTCCC 424
Query 621 TCACTATCCCCATCTCCCTCTCAATCTCTTTGGGTACTCTCCATACTCGCCAGACTACTC 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 TCACTATCCCCATCTCCCTCTCAATCTCTTTGGGTACTCTCCATACTCGCCAGATTACTT 484
Query 681 ATCATTCCCTACGAACTTATACGGCATGTACGGCTGCACTTCTGGAGGACAATACGGAGT 740
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 485 ATCATTCCCTACGAACTTATACGGCATGTACGGCTGTACTTCTGGAGGACAATACGGAGT 544
Query 741 CTATGGAAACAGAAACAGCGGAGGCGGTGGACTAACCGCAGCAGCCGCATCCGCTACTCC 800
|||||||||| ||||| | ||||||||||||||||| |||||||||||||| || ||||
Sbjct 545 CTATGGAAACCGAAACGGTGGAGGCGGTGGACTAACGGCAGCAGCCGCATCTGCCGCTCC 604
Query 801 TTTTTATCCTTGTGGTGGAGGACATGG---TG--GG-GTCCAGTTCTCTCAACCACAACC 854
|||||||||||| ||||||| ||||| || || |||||||||||||| ||||||||
Sbjct 605 TTTTTATCCTTGCGGTGGAGTACATGCACATGCTGGAGTCCAGTTCTCTCAGCCACAACC 664
Query 855 ATTTTATCATCACTTGTCTTCTTATAACCCTCACCATTACTCTCCTCCGACCTTTTCTAT 914
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 665 ATTTTATCATCACTTGTCTTCTTATAACCCTCACCATTACTCTCCTCAGACCTTTTCTAT 724
Query 915 GCAACAAGGTTCGCGTAACAGGCTTTCCGCTTCAACCACCTCTTATTCCTTACCGTTAAA 974
||||||||| || |||| |||||||| ||||| ||||||| ||||||||||||||||
Sbjct 725 GCAACAAGG--CG--TAACCGGCTTTCCCCTTCAGGCACCTCTCATTCCTTACCGTTAAA 780
Query 975 GAAGCTTAGAGTCTTTGGTA 994
||||||||||||| ||||||
Sbjct 781 GAAGCTTAGAGTCATTGGTA 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5