BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G22940.1 Length=1774 Score E Sequences producing significant alignments: (Bits) Value Ahg472545 jgi|Araly1|472545|fgenesh2_kg.1__2499__AT1G22940.1 2619 0.0 > Ahg472545 jgi|Araly1|472545|fgenesh2_kg.1__2499__AT1G22940.1 Length=1716 Score = 2619 bits (1418), Expect = 0.0 Identities = 1588/1670 (95%), Gaps = 12/1670 (1%) Strand=Plus/Plus Query 10 aataaaataaaataaaataaaGAGAAGGGACGAGAAATGAATAGCTTAGGAGGAATTAGG 69 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 AATAAAATAAAAGGAAATAAAGA-AAGGGACGAGAAATGAATAGCTTAGGAGGAATTAGA 59 Query 70 AGTTGGCCGGCGAATTGGAGAAGTACGACGGCGTCAATGACGACGACGGAGAGCGTTAGA 129 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 60 AGTTGGCCGGCGAATTGGAGAAGCACGACGGCGTCAATGACGACGACGGAGAGTGTTAGA 119 Query 130 AAGGTACCGCAAGTTTTAACAGTGGCGGGATCAGATTCCGGCGCCGGAGCTGGAATTCAA 189 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 120 AAGGTACCGCAAGTTCTAACTGTGGCGGGATCAGATTCCGGCGCCGGAGCTGGAATCCAA 179 Query 190 GCCGACCTTAAAGTCTGCGCAGCTCGTGGTGTGTATTGCGCTTCCGTCATAACCGCAGTC 249 || || || ||||| || || ||||||||||| ||||||||||||||||||||||| ||| Sbjct 180 GCAGATCTCAAAGTTTGTGCCGCTCGTGGTGTCTATTGCGCTTCCGTCATAACCGCCGTC 239 Query 250 ACTGCTCAGAACACTCGAGGAGTTCAATCTGTTCATCTTCTTCCTCCGGAATTTATCTCT 309 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 240 ACTGCTCAGAACACTCGAGGAGTCCAATCTGTTCATCTTCTACCTCCGGAATTCGTCTCT 299 Query 310 GAACAGCTCAAATCCGTCCTCTCTGACTTCGAATTCGACGTCGTGAAGACTGGGATGCTT 369 |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 300 GAACAGCTCAAATCTGTCCTCTCTGACTTTGAATTTGACGTCGTGAAGACTGGGATGCTT 359 Query 370 CCTTCTACTGAGATCGTTGAGGTTCTTCTTCAAAATCTATCAGATTTTCCAGTTCGTGCT 429 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 360 CCTTCTACTGAGATCGTTGAGGTTCTTCTTCAAAATCTAACAGATTTTCCAGTTCGTGCT 419 Query 430 TTGGTTGTTGATCCTGTGATGGTATCTACTAGTGGTCACGTT-TTGGCTGGTTCTTCTAT 488 ||||||||||||||||||||||||||||| ||||| || ||| || |||||||||||||| Sbjct 420 TTGGTTGTTGATCCTGTGATGGTATCTACGAGTGGGCATGTTCTT-GCTGGTTCTTCTAT 478 Query 489 TCTCTCTATCTTTAGAGAGAGATTACTACCAATTGCTGACATAATTACCCCAAATGTGAA 548 ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| Sbjct 479 TCTCTCTATCTTTAGAGAGAGATTACTGCCAATTGCTGACATTATAACCCCAAATGTGAA 538 Query 549 AGAGGCTTCTGCTTTACTTGATGGTTTTCGGATTGAGACTGTTGCAGAAATGCGGTCTGC 608 |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 539 AGAGGCATCTGCTTTACTTGGTGGTTTTCGGATTGAGACTGTTGCAGATATGCGGTCTGC 598 Query 609 AGCAAAGTCGTTGCATGAAATGGGTCCTAGATTCGTACTTGTTAAAGGTGGTGATCTTCC 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGCAAAGTCGTTGCATGAAATGGGTCCTAGATTCGTACTTGTTAAAGGTGGTGATCTTCC 658 Query 669 TGACTCATCAGATTCAGTAGATGTTTACTTTGATGGCAAGGAGTTTCATGAACTCCGTTC 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TGACTCATCAGATTCAGTAGATGTTTACTTTGATGGCAAGGAGTTTCATGAACTCCGTTC 718 Query 729 TCCTCGCATAGCTACAAGAAATACTCATGGGACTGGTTGCACTTTGGCTTCCTGTATTGC 788 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 719 TCCTCGCGTAGCTACAAGAAATACTCATGGGACTGGTTGCACTTTGGCTTCATGTATTGC 778 Query 789 AGCTGAGCTTGCAAAAGGCTCTTCCATGCTCTCAGCCGTCAAGGTGGCTAAACGCTTTGT 848 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 779 AGCAGAGCTTGCAAAAGGCTCTTCCATGCTCTCAGCCGTGAAGGTGGCTAAACGCTTCGT 838 Query 849 CGATAATGCCCTAGATTACAGCAAAGATATTGTCATTGGCAGTGGGATGCAAGGACCTTT 908 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 839 CGATAATGCCCTAGATTACAGCAAAGATATTGCCATTGGCAGTGGGATGCAAGGACCGTT 898 Query 909 TGACCAtttttttGGTCTTAAGAAGGATCCTCAAAGTTCTCGATGCAGCATATTCAATCC 968 |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 899 TGACCACTTTTTCGGTCTTAAGAAGGATCCCCAAAGTTCTCGATGCAGCATATTCAATCC 958 Query 969 AGATGACCTGTTTCTATATGCTGTTACAGATTCTAGAATGAACAAAAAATGGAACCGTTC 1028 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 959 AGATGACCTGTTTCTATATGCTGTTACAGATTCTAGAATGAACAGAAAATGGAACCGGTC 1018 Query 1029 CATTGTGGATGCCTTGAAAGCTGCTATAGAGGGAGGGGCCACCATCATACAACTGAGGGA 1088 ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1019 CATTGTGGATGCCGTGAAAGCTGCTATAGAGGGAGGGGCCACAATCATACAACTGAGGGA 1078 Query 1089 GAAAGAAGCCGAAACACGGGAGTTTCTTGAAGAAGCAAAAGCATGCATTGATATATGCCG 1148 ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| Sbjct 1079 GAAAGAAGCCGAAACACGGGAGTTTCTCGAAGAAGCAAAAGCATGCGTTGACATATGCCG 1138 Query 1149 GTCCCATGGAGTTAGTTTGCTGATAAACGACAGGATCGACATTGCCCTTGCTTGTGATGC 1208 |||||| |||||| ||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1139 GTCCCACAGAGTTATTTTGCTGATAAACGACAGGATCGACATCGCCCTTGCTTGTAATGC 1198 Query 1209 TGATGGAGTCCATGTTGGTCAATCCGACATGCCGGTTGATCTAGTTCGGTCTCTTCTTGG 1268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TGATGGAGTCCATGTTGGTCAATCCGACATGCCGGTTGATCTAGTTCGGTCTCTTCTTGG 1258 Query 1269 CCCGGACAAGATCATAGGGGTCTCATGTAAGACACCAGAACAAGCTCATCAAGCATGGAA 1328 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 CCCGGACAAGATCATCGGGGTCTCATGTAAGACACCAGAACAAGCTCATCAAGCATGGAA 1318 Query 1329 AGATGGTGCGGACTACATTGGGTCAGGAGGAGTTTTTCCAACGAACACTAAGGCCAACAA 1388 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1319 AGATGGTGCGGACTACATTGGGTCCGGAGGAGTTTTTCCAACAAACACTAAGGCCAACAA 1378 Query 1389 TCGTACCATAGGACTTGATGGGCTAAAAGAAGTATGTGAAGCATCAAAATTACCGGTTGT 1448 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1379 TCGTACCATAGGACTTGATGGGCTAAAAGAAGTATGTGAGGCATCAAAATTACCGGTCGT 1438 Query 1449 TGCAATCGGAGGCATAGGGATCTCAAATGCTGGGTCTGTTATGCAGATCGATGCACCGAA 1508 ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1439 TGCCATCGGAGGCATAGGGATCTCAAATGCTAAGTCTGTTATGCAGATCGATGCACCGAA 1498 Query 1509 CCTAAAAGGTGTAGCAGTTGTGTCAGCTTTGTTCGACCAAGATTGTGTTTTGACTCAAGC 1568 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 CCTAAAAGGCGTAGCAGTTGTGTCAGCTTTGTTCGACCAAGATTGTGTTTTGACTCAAGC 1558 Query 1569 TAAGAAGTTGCATAAAACGCTTAAAGAGAGCAAAAGGGGAATTTGAA--C-C--AAAAGG 1623 ||| |||||||||||||||||||||||||||||||||| |||||||| | | |||||| Sbjct 1559 TAAAAAGTTGCATAAAACGCTTAAAGAGAGCAAAAGGGAAATTTGAAGACGCCCAAAAGG 1618 Query 1624 TGTTTTTAGTTTTG-TTTT-AGGTGCTTACAAAATGTTGTAAACCTTTTA 1671 |||||||| ||||| |||| | |||||||||||||||||||||||| Sbjct 1619 TGTTTTTA-TTTTGGTTTTCACAAA-TTACAAAATGTTGTAAACCTTTTA 1666 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66581748260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5