BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23090.1
Length=2292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472562 jgi|Araly1|472562|fgenesh2_kg.1__2516__AT1G23090.1 3565 0.0
> Ahg472562 jgi|Araly1|472562|fgenesh2_kg.1__2516__AT1G23090.1
Length=2257
Score = 3565 bits (1930), Expect = 0.0
Identities = 2137/2236 (96%), Gaps = 17/2236 (1%)
Strand=Plus/Plus
Query 9 TAAAGACCGACCCGAAATAATACTCATGTTTAAATTATCAGCAAAGAGCCAAGAGAGGAA 68
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAAGACCGACCCGAAAGAATACTCATGTTTAAATTATCAGCAAAGAGCCAAGAGAGGAA 60
Query 69 ACATCACACATTGGTGACAAAAATTCTTAGGAAAACCAATT-A--ATGGAGGTGCACAAG 125
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 ACATCACACATTGGTGACAAAAATTCTTAGGAAAACCAATTAATTATGGAGGTGCACAAG 120
Query 126 GTGGTTGCTCCGCCGCATAAGAGCACGGTGGCAAAGCTAAAGACAAAACTGAAGGAGACT 185
|||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 121 GTGGTTGCTCCGCCGCATAAGAGCACGGTGGCGAAGCTGAAGACAAGACTGAAGGAGACC 180
Query 186 TTCTTCCCGGACGATCCCTTAAGACAGTTCAGAGGACAACCAAACCGTACCAAGCTCATA 245
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 181 TTCTTCCCGGACGATCCCTTAAGACAGTTCAGAGGACAACCAAATCGTACCAAACTCATA 240
Query 246 CGCGCCGCTCAATACATTTTTCCAATCCTCCAATGGTGTCCTGAGTACAGCTTCAGCCTA 305
||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 241 CGCGCGGCTCAATACATTTTCCCTATCCTCCAATGGTGTCCTGAGTACAGCTTCAGACTC 300
Query 306 CTCAAATCCGACGTCGTTTCAGGTCTTACCATCGCTAGTTTAGCTATTCCTCAGGGGATT 365
|||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 301 CTCAAATCCGACGTCGTTTCTGGTCTCACTATCGCCAGTTTAGCTATTCCTCAGGGGATA 360
Query 366 AGTTACGCGAAGCTAGCAAATTTGCCACCAATCGTTGGTCTATACTCGAGCTTCGTGCCA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTTACGCGAAGCTAGCAAATTTGCCACCAATCGTTGGTCTATACTCGAGCTTCGTGCCA 420
Query 426 CCGTTGGTTTATGCGGTCTTGGGAAGCTCAAGAGATCTAGCAGTGGGACCAGTCTCCATA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCGTTGGTTTATGCGGTCTTGGGAAGCTCAAGAGATCTAGCAGTGGGACCAGTCTCCATA 480
Query 486 GCGTCGTTAATCTTAGGATCCATGCTAAGGCAACAAGTATCTCCCGTAGACGATCCTGTT 545
|||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 481 GCGTCGTTGATCTTAGGATCCATGCTAAGGCAACAAGTATCACCCGTAGACAATCCTCTT 540
Query 546 CTCTTTCTACAGCTAGCCTTCTCTTCTACCTTCTTTGCTGGTCTCTTTCAAGCCTCTCTT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCTTTCTACAGCTAGCCTTCTCTTCTACCTTCTTTGCTGGTCTCTTTCAAGCCTCTCTT 600
Query 606 GGAATCCTCAGGCTGGGATTTATAATAGACTTTCTATCAAAAGCGACGCTAATAGGGTTT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAATCCTCAGGCTGGGATTTATAATAGACTTTCTATCAAAAGCGACGCTAATAGGGTTT 660
Query 666 ATGGGTGGAGCAGCCATAATTGTATCACTCCAACAGCTAAAGGGTCTGCTTGGGATAACT 725
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 ATGGGTGGAGCAGCCATAATTGTATCACTCCAACAGTTAAAGGGTCTGCTTGGGATAACT 720
Query 726 CATTTCACAAAGCATATGAGTGTAGTCCCTGTTCTCTCCTCTGTTTTCCAACACACCAAC 785
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 CATTTCACAAAGCAAATGAGTGTGGTCCCTGTTCTCTCCTCTGTTTTCCAACACACCAAC 780
Query 786 GAGTGGTCATGGCAAACAATTGTGATGGGAGTTTGCTTCTTGCTCTTCTTGCTCTCGACA 845
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 781 GAGTGGTCATGGCAAACAATTGTGATGGGAGTTTGCTTCTTGTTCTTCTTGCTCGCTACA 840
Query 846 CGTCACCTCAGCATGAAGAAGCCGAAGCTGTTTTGGGTCTCAGCCGGAGCACCACTTCTT 905
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 841 CGTCACCTCAGCATGAAGAAGCCGAAGCTGTTCTGGGTCTCAGCCGGAGCTCCACTTCTT 900
Query 906 TCCGTTATCGTCTCTACACTTCTTGTCTTTGTTTTCAGAGCCGAGCGTCACGGAATCAGC 965
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 TCCGTTATCGTCTCTACACTTCTTGTCTTTGTTTTCAGAGCCGACCGTCACGGAATCAGC 960
Query 966 GTCATCGGGAAATTACCAGAAGGTTTGAATCCACCGTCTTGGAACATGCTTCAGTTTCAC 1025
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTCATCGGGAAATTACAAGAAGGTTTGAATCCACCGTCTTGGAACATGCTTCAGTTTCAC 1020
Query 1026 GGTAGTCATCTCGCACTCGTCGCCAAAACCGGACTCGTCACCGGAATCGTCTCCCTCACG 1085
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGAAGTCATCTCGCACTCGTCGCCAAAACCGGACTCGTCACCGGAATCGTCTCCCTCACG 1080
Query 1086 GAAGGAATCGCAGTGGGAAGAACATTTGCAGCGCTAAAGAACTACCACGTAGATGGAAAC 1145
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GAAGGAATCGCAGTGGGAAGAACATTCGCAGCGCTAAAGAACTACCACGTAGATGGAAAC 1140
Query 1146 AAAGAGATGATCGCCATTGGTCTGATGAACGTAGTAGGCTCTGCCACATCTTGCTACGTC 1205
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAGAGATGATCGCCATTGGTCTAATGAACGTAGTAGGCTCTGCCACATCTTGCTACGTC 1200
Query 1206 ACAACCGGAGCATTCTCTAGATCAGCGGTCAACAACAACGCGGGAGCTAAAACCGCAGTT 1265
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1201 ACAACCGGAGCATTCTCTAGATCAGCGGTTAACAACAACGCGGGAGCTAAAACCGCGGTT 1260
Query 1266 TCAAACATTGTTATGTCGGTCACTGTTATGGTTACGCTTCTCTTCCTAATGCCGCTTTTC 1325
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCAAACATCGTGATGTCGGTCACGGTTATGGTTACGCTTCTCTTCCTAATGCCGCTTTTC 1320
Query 1326 GAATACACTCCCAATGTGGTCCTCGGTGCCATCATTGTGACCGCGGTCATTGGTCTCATC 1385
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1321 GAGTACACTCCCAACGTGGTCCTCGGTGCCATCATCGTGACCGCGGTCATTGGTCTAATT 1380
Query 1386 GACCTTCCCGCGGCCTGTCACATATGGAAGATCGATAAATTTGATTTCTTGGTGATGCTT 1445
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1381 GACCTTCCCGCGGCCTGTCAGATATGGAAGATCGATAAATTTGATTTCCTGGTGATGCTT 1440
Query 1446 TGCGCGTTCTTTGGTGTCATTTTCCTATCCGTTCAAAACGGTCTAGCCATTGCGGTGGGG 1505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1441 TGCGCGTTCTTTGGTGTCATTTTCCTATCCGTTCAAAACGGTCTAGCCATTGCGGTAGGG 1500
Query 1506 CTATCGTTGTTCAAGATATTGATGCAAGTAACAAGGCCGAAAATGGTTATAATGGGTAAT 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CTATCGTTGTTCAAGATATTGATGCAAGTAACAAGGCCGAAAATGGTTATAATGGGTAAT 1560
Query 1566 ATTCCTG-GAACGGATATATACCGAGATCTTCATCATTACAAAGAAGCACAAAGGATCCC 1624
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1561 ATTCC-GCGAACGGATATATACCGGGATCTTCATCATTACAAAGAAGCACAAAGGATTCC 1619
Query 1625 GGGATTTCTTGTTTTAAGCATCGAATCTCCTGTCAATTTCGCCAATTCTAACTACCTCAC 1684
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GGGATTCCTTGTCTTAAGCATTGAATCTCCTGTCAATTTCGCCAATTCTAACTACCTCAC 1679
Query 1685 TGAAAGAACATCTCGTTGGATTGAAGAATGCGAAGAAGAGGAAGCTCAAGAGAAGCATTC 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGAAAGAACATCTCGTTGGATTGAAGAATGCGAAGAAGAGGAAGCTCAAGAGAAGCATTC 1739
Query 1745 TAGCCTACAGTTCTTGATTCTTGAAATGTCAGCCGTGAGCGGTGTAGACACAAACGGAGT 1804
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TAGCCTTCAGTTCTTGATTCTTGAAATGTCAGCCGTGAGCGGTGTAGACACAAACGGAGT 1799
Query 1805 GTCCTTTTTTAAGGAACTTAAGAAAACAACCGCCAAGAAGGACATCGAGCTTGTGTTTGT 1864
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1800 CTCCTTTTTTAAGGAACTGAAGAAAACAACCGCGAAGAAGGACATTGAGCTTGTGTTTGT 1859
Query 1865 GAACCCTCTAAGCGAAGTGGTGGAGAAGCTTCAAAGAGCTGACGAACAAAAAGAGTTCAT 1924
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1860 GAACCCTCTAAGCGAAGTGATGGAGAAGCTACAAAGAGCTGACGAACAAAAAGAGTTCAT 1919
Query 1925 GAGGCCCGAGTTTCTCTTCTTAACCGTCGCTGAGGCCGTTGCGTCGCTCTCTCTTAAAGG 1984
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1920 GAGACCCGAGTTTCTCTTCTTAACCGTCGCTGAGGCCGTTGCGTCGCTATCTCTTAAAGG 1979
Query 1985 GCCATCTCTCAGTAACGTTTAACTATAATTTTTTGTATCGGTCCAA-TATTGATATTTAA 2043
|||| |||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 1980 GCCACCTCTCAATAACGTTTAACTATAATTTTTTGGGTCGGTCCAAATAT-GATATTTAA 2038
Query 2044 CCGATGGTTAAAtttttc-tttttgtctctttttcatcttttAATTTCAGTACAGATGTA 2102
| |||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct 2039 CGGATGGTTAAATTTTTCCTTTTTGTCTCTTTT-CATCTTTTCATTTCGGTACAGATGTA 2097
Query 2103 ATATTACGTT-CT-TCTCTCTCTTTCTTCAGTGATGATTTTGGTCAAGATATGTTTG-TA 2159
|| ||| ||| || |||||||||||| | || ||||||||||||||||| | | ||
Sbjct 2098 ATGTTATGTTTCTCTCTCTCTCTTTC--CGGTAATGATTTTGGTCAAGAT-TACAAGATA 2154
Query 2160 TGATTTCGCCATTTTGTAGT-TTACTAGGCCATGTTTAGTCTCCGAGAATAAAATTGATC 2218
|| ||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||
Sbjct 2155 TGTTTTCGCCATTTTGTAGTATTACTTTGCCATATTTAGTCTCCGAGGATAAAATTGATC 2214
Query 2219 TAGAA-TCGAATTGAT 2233
| ||| ||||||||||
Sbjct 2215 TTGAAATCGAATTGAT 2230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86312495170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5