BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23110.1 Length=1211 Score E Sequences producing significant alignments: (Bits) Value Ahg472566 jgi|Araly1|472566|fgenesh2_kg.1__2520__AT1G23110.3 1181 0.0 Ahg472563 jgi|Araly1|472563|fgenesh2_kg.1__2517__AT1G23100.1 54.7 2e-06 > Ahg472566 jgi|Araly1|472566|fgenesh2_kg.1__2520__AT1G23110.3 Length=855 Score = 1181 bits (639), Expect = 0.0 Identities = 788/856 (92%), Gaps = 26/856 (3%) Strand=Plus/Plus Query 201 AGCAATCAAATTTTAGAACAGAACAAGGGAGACAACAAAGTAGTTTGATTATTCTGGTGG 260 ||||||||||||||||||| || || ||| ||||||||||||| |||| ||||||| Sbjct 20 AGCAATCAAATTTTAGAAC--AA-AA--GAGGCAACAAAGTAGTTGGATTGTTCTGGTAT 74 Query 261 CGTATAGATAAATGTTGGTTGTCTGTGGTTT-AGCAAGATTACCATGAGTCTGCAAAATG 319 |||||||| | || |||||| | |||||||| || |||||| |||||| || ||||||| Sbjct 75 CGTATAGAGAGATTTTGGTTCTGTGTGGTTTCAGGAAGATT-TCATGAGCCTCCAAAATG 133 Query 320 TATCAAAGTCGAGC---AATGCCCTTGAGGGTATCCACGGGGTTCATGTCACGTCTCATT 376 |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 134 TATCAAAGTCAAGCAATAATGCCCTTGAGGGTATCCATGGGGTTCATGTCACGTCTCATT 193 Query 377 CTCCTTTCTCATTTGAGAAGACAACTCAAGTTAGTGACTTTCAGACCAACACCAAATCCT 436 | || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 194 CGCCCTTCTCATTTGAGAAGACAACTCAAGTTAGTGAC--T----------CCAAATCCA 241 Query 437 CTGTCATGGAATCAAATCAAAGACTTTC-CATCGAACGTTTTTGGCAGCAAAGACCTCCA 495 | | ||||||||||||||| |||| | | |||||||||||||||||| || ||||||||| Sbjct 242 CAGACATGGAATCAAATCAGAGAC-TGCTCATCGAACGTTTTTGGCAACAGAGACCTCCA 300 Query 496 TGCTTAAGGCCAATCTGTTGCAGCATTCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 555 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 TGCTTAAGGCCAATCTGTTGCAGCATCCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 360 Query 556 AATGTGGCTACTTCACTTCCTTTCATCTTCCTCGGAATGCAGGCACCAAGGAAGAATCTG 615 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 361 AATGTGGCTACTTCACTTCCTTTCATATTCCTCGGTTTGCAGGCACCAAGGAAGAATCTG 420 Query 616 AACACAAAGGTGTACGCAAACTCCCTAATTGGAGTTGGAATTGCGTCGAGTCTGTATCAT 675 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 421 AACACAAAGGTGTACGCAAACTCCTTAATTGGAGTTGGAATTGCATCGAGTCTGTATCAT 480 Query 676 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 540 Query 736 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAATTTCTGATGGCTGCA 795 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 541 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAGTTTTTGATGGCTGCA 600 Query 796 TCAGCTTTAGTTCTACCTTTTCAACCTCTCATGGTCTCTGCCGTTCACACTGGAATGATG 855 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 601 TCAGCTTTAGTTCTACCTTTTCAGCCTCTCATGGTCTCTGCCGTTCACACCGGAATGATG 660 Query 856 GAGGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACAGCTCATAACGTA 915 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 661 GAAGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACCGCTCATAACGTA 720 Query 916 CACAAGATGTCTTCCTTGCTAGGAGGTGCTCT-GTTCATAGCTGATGATTTCTTCCCCGA 974 |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| Sbjct 721 CACAAGATGTCTTCATTGCTAGGAGGTGC-CTTGTTCATAGCTGATGATTTCTTCCCCGA 779 Query 975 GACACCTTTCCTTCACGCAGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 1034 |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GACACCATTCATTCACGCCGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 839 Query 1035 TAAACTTCTTGAGTAG 1050 ||| |||||||||||| Sbjct 840 TAAGCTTCTTGAGTAG 855 > Ahg472563 jgi|Araly1|472563|fgenesh2_kg.1__2517__AT1G23100.1 Length=501 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1183 CATTCCCAAACAAAAGAGATTATTGAATT 1211 ||||||||||||||||||||||||||||| Sbjct 501 CATTCCCAAACAAAAGAGATTATTGAATT 473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45213779562 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5