BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23205.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472578 jgi|Araly1|472578|fgenesh2_kg.1__2532__AT1G23205.1 1428 0.0
> Ahg472578 jgi|Araly1|472578|fgenesh2_kg.1__2532__AT1G23205.1
Length=889
Score = 1428 bits (773), Expect = 0.0
Identities = 859/899 (96%), Gaps = 12/899 (1%)
Strand=Plus/Plus
Query 1 ATCCATAACCCAAAAAGAGTCACTTCCGTGTCACAAGAAACCATGAAACTTTCTCTTCAT 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 ATCCATAACCCAAAAAGAGTCACTTCCGTGTCACAAAAAACCATGAAACCTTCTCTTCAT 60
Query 61 CAACCACTTCTCTTCTTCTTCTTAGCCAGCGTCCTCCCATTAATCCTGACCGTCCATTCT 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 61 CAACCACTTCTCTTCTTCTTCTTAGCCACCGTCCTCCCATTAATCCTGACCGTCCATCCT 120
Query 121 CAATCAGACGACTCAGATTTCATCCGTACTAGCTGCAACACCACATTATACCCTGACCTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAATCAGACGACTCAGATTTCATCCGTACTAGCTGCAACACCACATTATACCCTGACCTA 180
Query 181 TGCTTCTCTTCTCTTTCCTCCTTCTCTAGCTCTGTTCACAACGATCCAGCCCTCTTGGCT 240
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TGCTTCTCCTCTCTTTCCTCCTTCTCTAGCTCTGTCCACAACGATCCAGCCCTCTTGGCT 240
Query 241 CGAGCCGCCATCTCCGTCACTCTCACCAAGACTCTCGACTTAGCCTCATACCTCGCCAAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGCCGCCATCTCCGTCACTCTCACCAAGACTCTCGACTTAGCCTCATACCTCGCCAAC 300
Query 301 ATCACCACTCTCCAGCCAGAGAGCAACGAAGATGGTGCTCACCACCCAACCGCAGCCGCT 360
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GTCACCACTCTCCAGCCGGAGAGCAACGAAGATGGTGCCCACCACCCAACCGCAGCCGCT 360
Query 361 GTTTTTCACGACTGCTTCGACAATCTTAAAGACGCGGTCGAAGAAATGAAAGGCTCGATG 420
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 361 GTTTTTCATGACTGCTTCGACAATCTTAAAGATGCGGTCGAAGAAATGAGAGGCTCGATG 420
Query 421 AAACAGATGAGGGAGCTGGTCTCGACTGGCTCGCTCGAGTCCTTCAGGTTCCAAATGAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACAGATGAGGGAGCTGGTCTCGACTGGCTCGCTCGAGTCCTTCAGGTTCCAAATGAGT 480
Query 481 AACGTGCAGACGTGGCTCAGTGCGGCTTTAACTGATGAGGAGACTTGTACGGACGGATTT 540
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 481 AACGTGCAGACGTGGCTCAGTGCGGCTTTAACCGATGAAGAGACTTGTACGGACGGGTTT 540
Query 541 AAAGACATTCACGATGAGCCGAGGAAGGATGACATATGCGCACGGGTCGATGACGTTAAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 AAAGACATTCACGATGAGCCGAGGAAGGATGACATATGCGCACGGGTCGATGACGTCAAA 600
Query 601 AAGATGACTAGTAATGCGTTGGCTCTAGTTAATCGATGTGTTGATAAGGCCATACATTGA 660
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 601 AAGATGACTAGTAATGCGTTGGCTCTAGTTAATCGATGTGTTGATAAGGCGATCCATTGA 660
Query 661 TCATTTTATCATTATTCACTAAATATTCTTCTTCttttttttCTTA--CTTGAAAAAGAA 718
|||| ||||| |||| | | ||||| || |||||||| ||| || |||||||||
Sbjct 661 GCATTCTATCA--ATTC--T---TCTTCTT-TT-TTTTTTTT-TTAAACTCGAAAAAGAA 710
Query 719 GTTATTGTTTAAATGTTTTTGGTTATCACGCGTGCATGATAGAGATATAATAAGATAAGC 778
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 711 ATTATTGTTTAAATGTTTTTGGTTCTCACGCGTGCATGATAGAGATATAATAAGATAAGC 770
Query 779 CTGTTTGTGATTGGCTGTAATGAAATAGTGATATTATGTAGTTGTTAACGCTTTTTGTTT 838
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CTATTTGTTATTGGCTGTAATGAAATAGTGATATTATGTAGTTGTTAACGCTTTTTGTTT 830
Query 839 GTCGAAATTACGAAAAGAATCAAGTGTGTGTAAAAAGAATTAGTAGTCAATTATTTCTT 897
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 831 GTCGAAATTACGAAAAGAATCAAGTGTGTGTAAAAAGAATTAGTAGTCTATTATTTCTT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5