BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23310.1 Length=2086 Score E Sequences producing significant alignments: (Bits) Value Ahg472589 jgi|Araly1|472589|fgenesh2_kg.1__2543__AT1G23310.1 3018 0.0 Ahg926386 jgi|Araly1|926386|scaffold_201947.1 1679 0.0 > Ahg472589 jgi|Araly1|472589|fgenesh2_kg.1__2543__AT1G23310.1 Length=1978 Score = 3018 bits (1634), Expect = 0.0 Identities = 1811/1896 (96%), Gaps = 13/1896 (1%) Strand=Plus/Plus Query 1 GCATAAAAACGAGACACGGATATAGAGATATCGTGAATTGACTTTTGTCTGACAAATCCT 60 |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| | Sbjct 1 GCATAAAAACGAGACACGGATAGATAGATATCGTGAACTGACTTTTGTCTGACAAATCGT 60 Query 61 CTTCGTCAATTTCAGTGGCTCTGCTGCTTCCTTTGTTGTGAAGCCACATAGATTAGATTG 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 61 CTTCGTCAATTTCAGTGGCTCTGCTGCTTCCTTTGTTGTGAAGCCACAT-GATTGGATTG 119 Query 121 AGGAATGATCCAAACTCATGTCATACACACATTTGTAATCTGCTACACAAAATAC-TTTT 179 |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 120 AGGAATGATCCAAATTCATGTCATACACACAATTGTAATCTGCTACACAAAATACTTTTT 179 Query 180 AAAATCACACACACTAATATTTTAACTCTCCCCACTCTTTGCCTTGCCCTTGGCTCTAGA 239 ||| ||||||||||||||||||||||||| |||||||||| |||| |||| ||||| | Sbjct 180 AAAGTCACACACACTAATATTTTAACTCTACCCACTCTTT-TCTTG-CCTTTGCTCTTCA 237 Query 240 ACCGAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGAGGAGGG 299 ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 238 ACCAAACGTGACTCTCCAGATAGACTTTTGGGGTCACAACATTGTGTTTGAAGAGGAGGG 297 Query 300 AAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTCTCAAGGCATTAGACTA 359 ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 298 TAGAAGTGAGCTAGCGATTGCTTAAGAGTGAACATAAATGGCTCTCAAGGCATTAGACTA 357 Query 360 CGATACTCTGAATGAAAACGTCAAGAAGTGTCAGTATGCCGTAAGAGGTGAACTTTATCT 419 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 358 CGATACTCTGAATGAAAACGTCAAGAAGTGTCAATATGCCGTCAGAGGTGAACTCTATCT 417 Query 420 CCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGATTATTTTCACAAACGTTGGGAACCC 479 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 418 CCGAGCTTCTGAGCTTCAGAAAGAAGGCAAAAAGATTATCTTCACAAACGTTGGGAACCC 477 Query 480 TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGGTGGTTGCGCTTTGCCAAGC 539 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TCACGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGGTGGTTGCGCTTTGCCAAGC 537 Query 540 TCCGTTTCTACTAGATGACCCAAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAG 599 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 538 TCCGTTTCTACTAGATGACCCCAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAG 597 Query 600 AGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGGTGCTTACAGTGATTCAAGAGG 659 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 598 AGCTAAGCATTATCTTTCCTTGACTTCAGGCGGTTTAGGTGCTTACAGTGACTCAAGAGG 657 Query 660 CCTTCCAGGAGTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG 719 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 658 CCTTCCAGGAGTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGCTATCCAAG 717 Query 720 TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAA 777 Query 780 TTGTGTTATACGCGGTAATGGAGATGGGATTCTAGTTCCGGTTCCACAGTATCCACTTTA 839 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || Sbjct 778 CTGTGTTATACGCGGTGATGGAGACGGGATTCTAGTTCCGGTTCCACAGTATCCACTCTA 837 Query 840 CTCAGCTACCATATCACTGTTAGGTGGTACTCTTGTTCCTTACTATCTTGATGAGTCTGA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 CTCAGCTACCATATCACTGTTAGGTGGTACTCTTGTTCCTTACTATCTTGATGAGTCTGA 897 Query 900 AAACTGGGGACTTGATGTTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGG 959 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 898 AAACTGGGGACTTGATGTTAATAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGG 957 Query 960 GATAACAGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTAAG 1019 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 958 GATAACTGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGTCAGTGTCTAAG 1017 Query 1020 CGAAGCTAACATAAGAGAGATATTGAAGTTCTGTTATAACGAGAAACTGGTTCTTCTGGG 1079 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1018 CGAAGCTAACATAAGAGAGATATTGAAGTTCTGTTATAACGAGAAATTGGTTCTTCTGGG 1077 Query 1080 AGACGAGGTTTATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAA 1139 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1078 AGACGAGGTTTATCAGCAGAACATATATCAGGATGAGCGTCCCTTTATCAGCTCCAAGAA 1137 Query 1140 GGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCTTTTCACAC 1199 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 1138 GGTTTTGATGGAAATGGGTTCACCGTTCAGCAAGGGAGTTCAGCTTGTATCTTTTCACAC 1197 Query 1200 AGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGAGGTGGATACTTTGAGATGACCAA 1259 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1198 AGTCTCTAAAGGATATTGGGGCGAATGTGGACAGCGAGGTGGATACTTTGAGATGACCAA 1257 Query 1260 CCTCCCTCCAAGGGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAA 1319 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1258 CCTCCCTCCAAGGGTTGTTGAGGAGATATACAAGGTTTCATCAATTGCCCTCAGCCCCAA 1317 Query 1320 TGTCTCTGCGCAAATCTTTATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTC 1379 |||| |||| || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1318 TGTCCCTGCCCAGATCTTTATGGGTTTGATGGTTAGTCCTCCAAAGCCTGGAGACATTTC 1377 Query 1380 ATATGACCAGTTCGCCCGTGAAAGCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAG 1439 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1378 ATATGACCAGTTCACCCGTGAAAGCAAGGGGACTCTTGAATCTTTGAGAAGAAGAGCAAG 1437 Query 1440 GCTCATGACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGGTGC 1499 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1438 AATCATGACTGATGGATTCAACAGCTGCAAAAACATCGTGTGCAATTTCACAGAAGGTGC 1497 Query 1500 AATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGCTGCAAAACAAGC 1559 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 1498 AATGTATTCGTTTCCTCAAATACGGCTACCACCGGGAGCTATCCAAGCTGCAAAACAAGC 1557 Query 1560 TGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCAC 1619 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 CGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCAC 1617 Query 1620 AGTACCTGGCTCTGGATTTGGACAGAAAGAAGGTGTGTTCCATCTGAGGACAACAATCCT 1679 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1618 AGTACCTGGCTCTGGGTTTGGACAGAAAGAAGGTGTGTTCCATCTGAGGACAACGATCCT 1677 Query 1680 GCCAGCAGAAGATGAGATGCCGGAGATCATGGATAGCTTCAAGAAGTTCAACGACGAGTT 1739 |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1678 GCCAGCAGAAGAAGAGATGCCGGAAATCATGGATAGTTTCAAGAAGTTCAACGACGAGTT 1737 Query 1740 CATGACTCAGTATGATAATAACTTTGGTTATTCGAAAATGTGATTACTTCTTC--TTCTG 1797 |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| Sbjct 1738 CATGACTCAGTATGATAATAACGTTGGTTATTCGAGAATGTGATTACTTCTTCAGTTCTT 1797 Query 1798 --AA-CGACTATTGTGTTCTGCTACACTCTTTAAAGCTAAATCTCTGTAGTACACTCTTT 1854 || | ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1798 CTAAACAACTATTGTGCTCAGCTACACTCTTTAAAGCTAAATCTCTGTAGTACACTCTTT 1857 Query 1855 CTCTT-TGCCCTATTCTATAAAC-CATATCTCTCTC 1888 || || || |||||||||||||| | | |||||||| Sbjct 1858 CT-TTCTGTCCTATTCTATAAACTC-TCTCTCTCTC 1891 > Ahg926386 jgi|Araly1|926386|scaffold_201947.1 Length=1490 Score = 1679 bits (909), Expect = 0.0 Identities = 1279/1459 (88%), Gaps = 19/1459 (1%) Strand=Plus/Plus Query 335 AAATGGCTCTCAAGGCATTAGACTACGA-TACTCTGAATGAAAACGTCAAGAAGTGTCAG 393 ||||| |||||||||||||||||||||| | | |||||||||||||||||||| |||||| Sbjct 20 AAATGTCTCTCAAGGCATTAGACTACGAGT-CGCTGAATGAAAACGTCAAGAATTGTCAG 78 Query 394 TATGCCGTAAGAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG 453 ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 79 TATGCAGTCAGAGGTGAACTTTATCTCCGTGCTTCTGAGCTTCAGAAAGAAGGCAAAAAG 138 Query 454 ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCAT-TGACATTTCC 512 |||||||||||||| ||||| |||||||||||||||||||| ||||| | |||| ||||| Sbjct 139 ATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAAAAGCC-TCTGACTTTTCC 197 Query 513 TCGCCAGGTGGTTGCGCTT-TGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGAA 571 ||| ||||||||||| || |||||||| || ||||| |||||||| |||||| |||| | Sbjct 198 TCGTCAGGTGGTTGC-TTTATGCCAAGCACCATTTCTGCTAGATGATCCAAATATTGGTA 256 Query 572 TGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCG 631 || |||| ||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 257 TGATATTCCCAGCAGATGCTATTGCAAGAGCTAAGCATTATCTTTCTTTGACTTCTGGTG 316 Query 632 GT-TTAGGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTGAG 690 || || |||||||||||||| |||||||||||||| |||||| ||||||| ||||||||| Sbjct 317 GTCTT-GGTGCTTACAGTGACTCAAGAGGCCTTCCGGGAGTTCGGAAAGAAGTTGCTGAG 375 Query 691 TTCATTCAACGGCGTGATGGGTATCCAAGTGACCCAGAACTCATCTTTCTCACTGATGGA 750 |||||| ||||||||||||| |||||||| |||||||||||||| ||||| ||||||||| Sbjct 376 TTCATTGAACGGCGTGATGGATATCCAAGCGACCCAGAACTCATATTTCTAACTGATGGA 435 Query 751 GCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTTATACGCGGTAATGGA-GATGGGAT 809 ||||||||||||||||||||||||||||||||||| ||||||||| | | | ||||| || Sbjct 436 GCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCA-GAAAGATGGAAT 494 Query 810 TCTAGTTCCGGTTCCACAGTATCCACTTTACTCAGCTACCATATCACTGTTAGGTGGTAC 869 ||| ||||| ||||| || |||||||| ||||| ||||| ||||| |||||||||||||| Sbjct 495 TCTGGTTCCAGTTCCGCAATATCCACTCTACTCGGCTACTATATCTCTGTTAGGTGGTAC 554 Query 870 TCTTGTTCCTTACTATCTTGATGAGTCTGAAAACTGGGGACTTGATGTTG-CTAACCTTC 928 ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| Sbjct 555 TCTTGTTCCTTACTATCTTGAAGAGTCTGAAAACTGGGGACTTGATGTTAAC-AACCTTC 613 Query 929 GACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAGTAAGGGCAATGGTGATCATTA 988 | ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 614 GCCAATCTGTTGCTCAGGCTCGCTCTCAAGGAATAACAGTAAGGGCAATGGTGATCATTA 673 Query 989 ACCCTGGGAACCCAACTGGCCAGTGTCTAAGCGAAGCTAACATAAGAGAGATATTGAAG- 1047 |||| || |||||||||||||||||||| |||||||||||| ||||||||||||| | | Sbjct 674 ACCCCGGAAACCCAACTGGCCAGTGTCTTAGCGAAGCTAACTTAAGAGAGATATT-ACGG 732 Query 1048 TTCTGTTATAACGAGAAACTGGTTCTTCTGGGAGACGAGGTTTATCAGCAGAACATATAC 1107 ||||||| | | |||| | | |||||||| |||||||| || |||||||| ||||||||| Sbjct 733 TTCTGTTGTGATGAGAGATTAGTTCTTCTTGGAGACGAAGTGTATCAGCAAAACATATAC 792 Query 1108 CAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGGTTTTGATGGAAATGGGTTCGCCGTTC 1167 || ||||||||||| |||||||| |||||||||||||||||||| ||||| | ||| || Sbjct 793 CAAGATGAGCGTCCTTTTATCAGTTCCAAGAAGGTTTTGATGGATATGGGAGCACCGATC 852 Query 1168 AGCAAGGAAGTTCAGCTTGTATCTTTTCACACAGTCTCTAAAGGATATTGGGGTGAATGT 1227 |||||||||||||||||| ||||||| ||||| || || |||||||| ||||| || ||| Sbjct 853 AGCAAGGAAGTTCAGCTTATATCTTTCCACACCGTTTCCAAAGGATACTGGGGCGAGTGT 912 Query 1228 GGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGGTTGTTGAGGAGATA 1287 || || ||||| || |||||||||||||| || ||||||| ||| |||||||||||| Sbjct 913 GGGCAACGAGGCGGTTACTTTGAGATGACAAATATCCCTCCCAGGACCGTTGAGGAGATA 972 Query 1288 TACAAGGTTGCATCAATTGCCCTCAG-CCCTAATGTCTCTGCGCAAATCTTTATGGGTTT 1346 ||||||||||| || || || ||||| ||| || |||||||| || || ||||||||||| Sbjct 973 TACAAGGTTGCCTCTATAGCTCTCAGTCCC-AACGTCTCTGCACAGATATTTATGGGTTT 1031 Query 1347 GATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGCAA 1406 ||||||| || |||||||||||||||||||| |||||||| |||| || |||||||| Sbjct 1032 AATGGTTAGCCCACCAAAGCCTGGAGACATTTCTTATGACCAATTCGTTCGCGAAAGCAA 1091 Query 1407 GGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGATTCAACAGCTG 1466 ||| || || ||||| ||||||||||||||||| | ||||| |||||||||||||| || Sbjct 1092 GGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTGATGGATTCAACAGTTG 1151 Query 1467 CAAAAACGTCGTGTGCAATTTCACAGAAGGTGCAATGTATTCGTTTCCTCAAATACGGTT 1526 |||||||||||| || ||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 1152 CAAAAACGTCGTCTGTAATTTCACAGAAGGTGCTATGTATTCGTTTCCTCAAATAAAGTT 1211 Query 1527 ACCAACGGGAGCTCTCCAAGCTGCAAAACAAGCTGGAAAAGTGCCAGACGTTTTCTACTG 1586 ||| || ||| || |||| ||||||||||| |||||||| || || ||||||||||| Sbjct 1212 ACCGTCGAAAGCAATCGAAGCAGCAAAACAAGCCGGAAAAGTCCCTGATGTTTTCTACTG 1271 Query 1587 TCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAA 1646 || |||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 1272 CCTTAAGCTCTTAGAAGCCACAGGAATCTCCACAGTTCCAGGCTCTGGATTTGGACAAAA 1331 Query 1647 AGAAGGTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAGAT 1706 |||||| ||||| ||| | ||||||||||| |||||||||||||| || ||||| ||||| Sbjct 1332 AGAAGGGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGAT 1391 Query 1707 CATGGATAGCTTCAAGAAGTTCAACGACGAGTTCATGACTCAGTA---TGATAATAACTT 1763 ||||| || ||||| |||||||| || ||||||||| ||||||| |||||||||||| Sbjct 1392 TATGGACAGTTTCAAAAAGTTCAATGATGAGTTCATGTCTCAGTACGGTGATAATAACTT 1451 Query 1764 TGGTTATTCGAAAATGTGA 1782 |||||| || | ||||||| Sbjct 1452 TGGTTACTCCAGAATGTGA 1470 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78465904700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5