BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23330.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472592 jgi|Araly1|472592|fgenesh2_kg.1__2546__AT1G23330.1 2710 0.0
> Ahg472592 jgi|Araly1|472592|fgenesh2_kg.1__2546__AT1G23330.1
Length=1682
Score = 2710 bits (1467), Expect = 0.0
Identities = 1618/1690 (96%), Gaps = 14/1690 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCCATGGTTGATGGTATCAGCTATACAAGTAGTAGAGCTATCTGTGAGCTCTGTT 60
||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1 ATGATTCCATGGTTGATGGTATCAGCTATACAGGTAGCAGAGCTATCTGTGAGCTCTGTT 60
Query 61 GTTCATATGTTTTATGGGCTTTACATATTCAGCTCCGCCGTCGCCGGAGATCTTACTCAG 120
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTTCATATGTTTTATGGGCTTTATATATTTAGCTCCGCCGTCGCCGGAGATCTTACTCAG 120
Query 121 TCGTTGAGCGAGTCAATCTTCAAACCCAAATCCACCATTGAAGTCAAACAAATTGACCAA 180
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 121 TCGTTGAGCGAGTCAATCTTCAAGCCCAAAGCCACCATTGAAGTCAAACAAATTGACCAA 180
Query 181 GAAAAGACAACAGACGTCAATGATTTGCCTCCTATTGTTTTGGTTCATGGGATTTTCGGA 240
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GAAAAGACAAAAGACGTCAATGATTTGCCTCCCATTGTTTTGGTTCATGGGATTTTCGGA 240
Query 241 TTTGGCAAAGGAAGATTAGGTGGTTTATCATACTTCGCTGGAGCAGAGAAGAAGGATGAG 300
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTTGGCAAAGGAAGATTAGGTGGATTATCATACTTTGCTGGAGCAGAGAAGAAGGATGAG 300
Query 301 AGAGTGTTAGTGCCTGATCTGGGATCATTGACTAGTGTACACGATAGGGCAAGAGAACTG 360
|||||||||||||||||| |||| || ||||| ||||||||||||||||| |||||||||
Sbjct 301 AGAGTGTTAGTGCCTGATTTGGGGTCTTTGACGAGTGTACACGATAGGGCTAGAGAACTG 360
Query 361 TTTTATTATCTGAAAGGTGGGTTAGTTGATTATGGTGAAGAACACAGTAAAGCTTGTGGG 420
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 361 TTTTATTATCTGAAAGGTGGATTAGTTGATTATGGTGAAGAACATAGTAAAGCTTGTGGG 420
Query 421 CACTCTCAATTTGGTCGTTTTTATGAAAAAGGGGAATACCAAGAATGGGATGAAGATCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACTCTCAATTTGGTCGTTTTTATGAAAAAGGGGAATACCAAGAATGGGATGAAGATCAT 480
Query 481 CCTATTCACTTTGTTGGTCACTCTGCTGGTGCTCAAGTTGTTCGTGTCTTGCAGCAAATG 540
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CCTATTCACTTTGTTGGTCATTCTGCTGGTGCTCAAGTTGTTCGTGTGTTGCAGCAAATG 540
Query 541 CTTGCTGATAAGATGTTTGAGGGTTATGAGAACACGAATGAGAACTGGGTGTTGAGTCTA 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 CTCGCTGACAAGATGTTTGAGGGTTATGAGAACACGAATGAGAACTGGGTGTTGAGTTTA 600
Query 601 ACGTCATTGTCAGGAGCGTTAAACGGGACTACTCGAACCTACATCGATGGAATTCAGCCT 660
|| || |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACATCTTTGTCAGGGGCATTAAACGGGACTACTCGAACCTACATCGATGGAATTCAGCCG 660
Query 661 GAAGATGGGAAGTCCCTAAAACCTATATCACTGCTTCAGATTTGCAAACTTGGAGTCATA 720
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAGACGGGAAGTCCCTGAAACCTATATCACTGCTTCAGATTTGCAAACTTGGAGTCATA 720
Query 721 ATGTATGACTGGATTGACATTCCTTGGCTCAAATCCTATTACAATTTCGGGTTCGACCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGTATGACTGGATTGACATTCCTTGGCTCAAATCCTATTACAATTTCGGGTTCGACCAT 780
Query 781 TTCAACATGTCGAGAAAGAAAACTGGTGTACGCGGCCTAGTCGATCTTCTGCTTGGAAAC 840
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 781 TTCAACATGTCGAGAAAGAAGACAGGTGTGCGCGGCCTAGTCGATCTTCTTCTTGGAAAC 840
Query 841 GCAGGTCCTTTTGCTGCATGTGGAGATTGGATCTTGCCGGACCTCTCAATCCAGGGATCA 900
||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||
Sbjct 841 GCAGGTCCTTTTGCTGCATCTGGAGATTGGATCTTGCCTGACCTCTCAATCCAGAGTTCA 900
Query 901 ATGACGCTAAACGCTAGTCTGCAGACTTTTCCAAACACGTTCTACTTCAGCTATGCGACT 960
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 ATGAAGCTAAACGCTAGTCTGCAGACTTTCCCAAACACGTTCTACTTCAGCTATGCGACT 960
Query 961 AAGCGTACCACTAAACCTCTTGGAATGATGACTGTTCCTTCAGGTGTGATGGGGATTCAT 1020
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 961 AAGCGTACTACTAAACCTCTTGGAATGATGACTGTTCCTTCAGGCGTGATGGGAATCCAT 1020
Query 1021 CCTCTGCTTTTCATCCGCGTGTTGCAGATGAGTCAGTGGCAATTTCCTCGTGACATTCCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCTCTGCTTTTCATCCGCGTGTTGCAGATGAGTCAGTGGCAATTTCCTCGTGACATTCCT 1080
Query 1081 CTGCCTTATAAAGGCTACAGAGATGAAGATTGGCAGGACAATGATGGAGCACTGAACACA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGCCTTATAAAGGCTACAGAGATGAAGATTGGCAGGACAATGATGGAGCACTGAACACA 1140
Query 1141 ATATCCATGACTCACCCACGAATTCCGGTTGAACATTC-TAGTCTCATTCTTCGTAGTGA 1199
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1141 ATATCCATGACTCACCCACGAATTCCGGTTGAACA-TCGTAGTCTCATTCTTCGTAGTGA 1199
Query 1200 CTCAGACTGTCTCCCTCTCCAACCAGGCATTTGGTACTACAAGATCGTGGAGGCAGATCA 1259
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTCAGACTGTCTCCCTCTCCTACCAGGCATTTGGTACTACAAGATCGTGGAGGCAGATCA 1259
Query 1260 TATAATGTTCATTATAAACCGAGAGCGAGCAGGTGTGGAGTTCGATTTGATCTACGACAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TATAATGTTCATTATAAACCGAGAGCGAGCAGGTGTGGAGTTCGATTTGATCTACGACAG 1319
Query 1320 TATCTTTGAGCGGTGCAGGAAACATGTATTCAGGAAGGCTCCTCAGACATTGCCTAACGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TATCTTTGAGCGGTGCAGGAAACATGTATTCAGGAAGGCTCCTCAGACATTGCCTAACGA 1379
Query 1380 AGCTCAACACCAGGAAAGAGGAGGCCAAGAAGAGTAGAGAGACCCAAA-TGTGATCAACA 1438
|||||||||||| |||||||||| ||||||||| ||||||| |||||| ||| |||||||
Sbjct 1380 AGCTCAACACCATGAAAGAGGAGACCAAGAAGAATAGAGAG-CCCAAAATGTCATCAACA 1438
Query 1439 AATGTATAGCTTCGTTTGTAACAAGAAGAATCCCCAAAGCTCGA-GATTTTTGGTGTCTC 1497
|||||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||||
Sbjct 1439 AATGTATAGCTTCGTTTGTA-CAACAAGAATCCCCAAAGCTC-ATGATTTT-GGTGTCTC 1495
Query 1498 ATAACTCTGACCAGCGTCTTAAGATTACTGGATTAGGATCTGGAATTGGCAGTGTTCACT 1557
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1496 CTAACTCTGACCAGCGTCTTAAGATTACTGGATTAGGATTTGTAATTGACAGTGTTCACT 1555
Query 1558 AT-T-TATGATAATATCCTATTCGAAGATAATGTTTCCATTTTGCCTTGAATTCTGTTAG 1615
|| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1556 ATGTGTATGATAATATCCTATTCGAAGATAACGTTTCCATGTTGCCTTGAATTCTGTTAG 1615
Query 1616 AAATCTCAAAG-CTAGTATAACATGAGAGACTAAAGTAGTGTATCAAAGATATGAATTCA 1674
||||||||| | |||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1616 AAATCTCAA-GTCTAGTATAACATGAGA--CTAAACTAGTGTATAAAAGATATGAATTCA 1672
Query 1675 TCTAGCTATT 1684
||||||||||
Sbjct 1673 TCTAGCTATT 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5