BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23390.1 Length=1538 Score E Sequences producing significant alignments: (Bits) Value Ahg472601 jgi|Araly1|472601|fgenesh2_kg.1__2555__AT1G23390.1 1552 0.0 > Ahg472601 jgi|Araly1|472601|fgenesh2_kg.1__2555__AT1G23390.1 Length=1202 Score = 1552 bits (840), Expect = 0.0 Identities = 1085/1201 (90%), Gaps = 25/1201 (2%) Strand=Plus/Plus Query 56 GGAGAAGAAGAAAG-TTCCATTGACGGAGACATACTCGAGTCAATCCTCTCCTATTTACC 114 |||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 10 GGAGGAGAAG-AAGTTTCCATTGACGGAGACATACTCGAATCAATCCTCTCCTATTTACC 68 Query 115 ACTCCTAGACCTCGATTCCGCTTGCCAAGTCTCCAAATCATGGAACCGCGCCGTCTT-TT 173 |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| || Sbjct 69 ACTCCTCGACCTCGATTCCGCTTGCCAAGTGTCCAAACCATGGAACCGCGCCGTCTTCTT 128 Query 174 ACTCCCTCCGCCGCCTTAAAACCATGCCGTGGTTGTTCGTCTACAACCAGAGAAATTCTC 233 ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct 129 -CTCCCTCCGCCGCCTTAAATCCATGCCGTGGTTGTTCGTTTACAATCAGAGAAATTCTC 187 Query 234 CGCCGTACACCATGGCGACGATGGCGATGGCTTATGATCCCAAGTCCGAG-GCCTGGATC 292 |||||||||||||| || |||||||||||||||||||||| |||| || | | |||||| Sbjct 188 CGCCGTACACCATGCCGGCGATGGCGATGGCTTATGATCCGAAGT-CGGGTGAATGGATC 246 Query 293 GAGCTCAACACCG---CATCATCTCCCGTCGAACACGTCTCCGTTGCTCGATCCTCTCAC 349 |||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 247 GAGCTCAAAAACGTATCATCATCTCCCGTCGAACACGTCTCCGTTGCTCGATCTTCTCAC 306 Query 350 TCCACGTTGCTCTACGCTTTATCTCCGGCGAGATTCTCTTTCTCAACCGACGCGTTTCAT 409 ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 307 TCCGCGTTGCTCTACGCTTTATCTCCGGCGAAATTCTCTTTCTCAATCGACGCGTTTCAT 366 Query 410 CTGACTTGGCAACACGTGGCACCGCCGAGAGTTTGGAGGATCGATCCAATCGTGGCTGTA 469 |||||||||| |||||||||||| |||||||| |||||||||||||||||||| || || Sbjct 367 CTGACTTGGCGACACGTGGCACCACCGAGAGTGTGGAGGATCGATCCAATCGTCGCCGTC 426 Query 470 GTCGGACGGAGCCTGATTATAGCCGGAGGTGTGTGCGATTTCGAGGAGGATAGATTCGCC 529 || ||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct 427 GTTGGACGGAACCTGATCGTTGCCGGAGGTGTGTGCGATTTCGAGGAGGATAGATTTGCC 486 Query 530 GTGGAGCTGTTCGACATCGAATCCGGAGACGGAGCGTGGGAGAGATGCGAATCGATGCCA 589 |||||| || | || |||||||| | ||||| | |||||||||||||||||||||||| Sbjct 487 GTGGAGTTGCTGGATGTCGAATCCAGCGACGGCGAGTGGGAGAGATGCGAATCGATGCCG 546 Query 590 GATTTTCTCTACGAATCCGCGT-CGTCCACGTGGCTTTCCGTAGCGGTGAGTTCGGAGAA 648 |||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| Sbjct 547 GATTTTCTCTACGAATCCGCGTCCG-CCACGTGGCTTTCCGTCGCGGTGAGTTCGGAGAA 605 Query 649 GATGTACGTGACGGAGAAGAGATCAGGCGTTACGTGTAGTTTCAATCCAGTAACTAGATC 708 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 606 GATGTACGTGACGGAGAAGAGATCAGGCGTTACGTGTAGTTTCGATCCAGAAACTAGATC 665 Query 709 GTGGACGAAGCTTCTCGATCTCTGTCCCGGCGAGTGTAGCTTATACTCACGTTCGATTGG 768 |||||| ||||||| |||||| ||||||||||||| ||| |||||||||||||||||||| Sbjct 666 GTGGACAAAGCTTCCCGATCTTTGTCCCGGCGAGTATAGTTTATACTCACGTTCGATTGG 725 Query 769 ATTCTCCGTTAATCGTTTAATTATGGCTGGGATCATCGGAGATGAATATAATCCGACGGG 828 |||||||| ||| ||| |||| |||||||||||||||||||| || ||||||||||||| Sbjct 726 ATTCTCCGGTAACCGTCTAATCATGGCTGGGATCATCGGAGACGAGGATAATCCGACGGG 785 Query 829 AATCGAACTGTGGGAAGTTATAGAT-TCTGACGAATCGC--AT---T-TGAAATTCGAGT 881 | ||||||| ||||| ||||||| | || |||||||||| || | |||||||||| | Sbjct 786 ACTCGAACTATGGGACGTTATAG-TCTCCGACGAATCGCCGATGAATCTGAAATTCGAAT 844 Query 882 CGATCGGATCTATGCCTGAGACGTATTTGGAGAAACTAAGAGGGATTAATTCTGATTGGC 941 |||| ||||||||||| || ||| ||| || || || ||||| | | |||||||||||| Sbjct 845 CGATTGGATCTATGCCAAAGCCGTGTTTCGATAAGCTCAGAGGAACTGATTCTGATTGGC 904 Query 942 CGTTAACGTCGATAGTGTTGAACGCGGTGGGAGATATGGTTTATGTACATGGTGCGGCGG 1001 |||||||||| |||| ||||||| |||||||||||||||||||| |||| | |||||||| Sbjct 905 CGTTAACGTCCATAGCGTTGAACACGGTGGGAGATATGGTTTATATACACGATGCGGCGG 964 Query 1002 AGAACGGCGGAGAGATTGTTGCGGCGGAGATTGAAGGAGGAAAGCTTTGTAAGTGGAGGA 1061 ||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| | Sbjct 965 AGAACGGCGGAGATATAGTGGCGGCGGAGATTGATGGAGGAAAGCTTTGTAAGTGGAGAA 1024 Query 1062 CTTTGCCAAACGCAGACGCTACTTGGa--aa-aaaaGTCACGCGGCTGAGAGAGTAATCG 1118 ||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||| Sbjct 1025 CTTTGCCAAACGCAGACGCTACTTGGATTAATAAAAGTCACGCGGGTGAGAGAGTTATCG 1084 Query 1119 TTGCGTGTTCAAACGTTGGTTTTAGCGATTTGAAACTTGCGTTTAGGAATAATTTGAGTT 1178 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1085 TTGCGTGTTCAAACGTTGGTTTTAGCGATTTGAAACTTGCGTTTAGGAATCATTTGAGTT 1144 Query 1179 TTCTCTCAACGTCAAAATATTGAATTTAATCGTGTCCGTTAAATTCAAAGCTTCTAGTCA 1238 | ||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1145 T-CTC--AACGTCAACATATTGAATGTAATCGTGTCCGTTAAATTCAAAGTTTCTAGTCA 1201 Query 1239 C 1239 | Sbjct 1202 C 1202 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57592450440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5