BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23730.1 Length=996 Score E Sequences producing significant alignments: (Bits) Value Ahg912233 jgi|Araly1|912233|Al_scaffold_0001_2487 1225 0.0 > Ahg912233 jgi|Araly1|912233|Al_scaffold_0001_2487 Length=777 Score = 1225 bits (663), Expect = 0.0 Identities = 739/777 (95%), Gaps = 0/777 (0%) Strand=Plus/Plus Query 90 ATGTCGACAGAGTCGTACGAAGACGCCATTAAAAGACTCGGAGAGCTTCTCAGTAAGAAA 149 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGTCGACAGAGTCGTACGAAGATGCCATTAAAAGACTAGGAGAGCTTCTCAGTAAGAAA 60 Query 150 TCGGATCTCGGGAACGTGGCAGCCGCAAAGATCAAGAAGTTAACGGATGAGTTAGAGGAA 209 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 TCGGATCTCGGGAACGTGGCAGCTGCAAAGATCAAGAAGTTAACGGATGAGTTAGAGGAA 120 Query 210 CTTGATTCCAACAAGTTAGATGCCGTAGAACGAATCAAATCCGGATTTCTCCATTTCAAG 269 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 CTTGATTCCAACAAGTTAGATGCCGTAGAACGAATCAAATCCGGATTTATCCATTTCAAG 180 Query 270 ACTAATAATTATGAGAAGAATCCTACTTTGTACAATTCACTTGCCAAGAGCCAGACCCCC 329 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct 181 ACTAATAATTATGAGAAGAATCCTACTTTGCACAATGCACTTGCCAAGAGCCAGAGCCCC 240 Query 330 AAGTTTTTGGTGTTTGCTTGTGCGGATTCACGAGTTAGTCCATCTCACATCTTGAATTTC 389 |||||| ||||||||||||||||||||||||||||||| || || ||||||||||| ||| Sbjct 241 AAGTTTCTGGTGTTTGCTTGTGCGGATTCACGAGTTAGCCCTTCACACATCTTGAACTTC 300 Query 390 CAACTTGGGGAAGCCTTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAG 449 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAACTTGGGGAAGCCTTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAG 360 Query 450 ACAAAGCACTCTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTCAACGTGGAG 509 ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 361 ACAAAACACTCTAATGTTGGTGCCGCCCTTGAATATCCAATTACAGTCCTTAACGTGGAG 420 Query 510 AACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAA 569 |||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 421 AACATTCTGGTGATTGGTCACAGCTGTTGTGGTGGAATAAAGGGACTTATGGCCATTGAG 480 Query 570 GATAATACAGCTCCCACTAAGACCGAGTTCATAGAAAACTGGATCCAGATCTGTGCACCG 629 ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 481 GATGATACAGCTCCCACTAAGACAGAGTTCATAGAAAACTGGATCCAAATCTGTGCACCG 540 Query 630 GCCAAGAACAGGATCAAGCAGGATTGTAAAGACCTAAGCTTTGAAGATCAGTGCACCAAC 689 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 541 GCCAAGAACAGGATCAAGCAGGAATGCAAAGACCTAAGCTTTGAAGATCAGTGCACCAAC 600 Query 690 TGTGAGAAGGAAGCCGTGAACGTGTCCTTGGGGAATCTTTTGTCTTACCCATTCGTGAGA 749 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 601 TGTGAGAAGGAAGCTGTGAACGTGTCCTTGGGGAATCTGTTGTCTTACCCATTCGTGAGA 660 Query 750 GAAAGAGTGGTGAAGAACAAGCTTGCCATAAGAGGAGCTCACTATGATTTCGTAAAAGGA 809 || ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||| Sbjct 661 GATAGAGTAGTGAAGAACAAGCTTTCCATAAGAGGAGCTCACTACGATTTCGTGAAAGGA 720 Query 810 ACGTTTGATCTTTGGGAACTTGACTTCAAGACTACCCCTGCCTTTGCCTTGTCTTAA 866 || |||||||||||||| || ||||||||||| |||||||||||||| ||||||||| Sbjct 721 ACTTTTGATCTTTGGGAGCTCGACTTCAAGACCACCCCTGCCTTTGCTTTGTCTTAA 777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37017352407 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5