BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G23840.1

Length=1080
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921440 jgi|Araly1|921440|scaffold_102721.1                        547    5e-155
  Ahg472644 jgi|Araly1|472644|fgenesh2_kg.1__2598__AT1G23830.1         252    5e-66 
  Ahg921441 jgi|Araly1|921441|scaffold_102722.1                        207    1e-52 


> Ahg921440 jgi|Araly1|921440|scaffold_102721.1
Length=731

 Score =  547 bits (296),  Expect = 5e-155
 Identities = 352/378 (93%), Gaps = 8/378 (2%)
 Strand=Plus/Plus

Query  701   ACATTAGTATGGTTGTTTCGGTCTTAGAAGAGGAAGAAGATAGTAAAGGCATCTATGGAA  760
             |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  349   ACATTAGTATGGTTGTTTCGGTCTTAGAGGAGGAAGAAGATGGTAAAGGCATCTATGGAA  408

Query  761   GTAGTGCTCTGTCTCTTTCAGCTTGGTACTTAAGAGGACAAGAGAAGCGTGACTTCTGGA  820
             | |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  409   GCAGTGCTTTGTCTCTTTCCGCTTGGTACTTAAGAGGACAAGAGAAGCGTGACCTCTGGA  468

Query  821   TGATGCTAG-TGTTCTTGGTCGGCGCTCTTGTGACAAGGATGCCATGTTTATACTACAAA  879
             ||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  469   TGATGCT-GATGTTCTTGGTCGGCGCTCTTGTGACGAGGATGCCGTGTTTATACTACAAA  527

Query  880   TGCAGTGAAAGTCTGAGTGGGAATGGAGTGTTGTACACTGGTCTCTATGTAAGTTTGATT  939
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  528   TGCAGTGAAAGTCTGAGTGGGAATGGAGTGTTGTACACTGGTCTCTATGTAGGTTTGATT  587

Query  940   TGTGTTGGGAATGTCGTTAAATGGGTTTCTTGTGTTGTTTGGTACCATGATTGTAACACA  999
             |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  588   TGTGTTGGGAATGTGGTTAAATGGGTATCTTGTGTTGTTTGTTACCATGATTGTAACACA  647

Query  1000  AGGGTCTTGAGGAAAAAGGGTGACGTGGAGATTGGGTCAAAAGC------TTTTGCTACA  1053
             | ||| |||||||| |||||||| || |||||||| ||||||||      ||||||||||
Sbjct  648   AAGGTTTTGAGGAAGAAGGGTGATGTAGAGATTGGATCAAAAGCCAAGGCTTTTGCTACA  707

Query  1054  TAGAGAAATTGTTTGTGA  1071
             ||||||||||||||||||
Sbjct  708   TAGAGAAATTGTTTGTGA  725


 Score =  481 bits (260),  Expect = 5e-135
 Identities = 320/349 (92%), Gaps = 4/349 (1%)
 Strand=Plus/Plus

Query  24   AGAAAGAGATCAACAAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACT  83
            |||||||||| ||||||||||||| |||||||| | |||||||||| |||||||||||||
Sbjct  5    AGAAAGAGATAAACAAATGGAGACGAAGAGCGACGTGAAGCTAAGTATCATCGAACTACT  64

Query  84   AAAACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCCTCTTTCTT-  141
            |||||||||| |  |||||||||||||||||||||||||||||||||||| || ||||| 
Sbjct  65   AAAACGAGCTGC-GAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCGTC-TTCTTC  122

Query  142  TGCTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTC  201
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  123  TGCTCCCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCTCTCCAAACTACTGTC  182

Query  202  TCACTCGCTTCCACATACATCTCCAAACTAGTCAATTCTGAGGAGGACTTGTCGGAGAAT  261
            |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct  183  TCACTCGCTTCCACATACCTCTCCAAACTAGTCAATTCTGAGGAAGACTTATCGGAGAAT  242

Query  262  GATCTTCTTCCTTGGCTGATTCAGACAACTCTGCTCTACTTCTTTCCCTATACTATTCTT  321
            |||||| |||| ||| || | |||||| |||| ||||||||||||||||| |||||| | 
Sbjct  243  GATCTTATTCCATGGTTGGTGCAGACATCTCTACTCTACTTCTTTCCCTACACTATTATC  302

Query  322  GACCTCCTTACCACCACCACGATCGTTGCAGCATCATCGATTGCTTACA  370
            ||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  303  GACCTCCTTACCACCACCACGATCGTTGCAGCATCTTCGATTTCTTACA  351


> Ahg472644 jgi|Araly1|472644|fgenesh2_kg.1__2598__AT1G23830.1
Length=1091

 Score =  252 bits (136),  Expect = 5e-66
 Identities = 211/246 (86%), Gaps = 10/246 (4%)
 Strand=Plus/Plus

Query  26   AAAGAGATCAACAAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACTAA  85
            ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct  1    AAAGAGATCAACAGATGGAGACCAAGAGCGAAGAGAAGCTAAGTGTCATCGAACTTCTAA  60

Query  86   AACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCGCT-CTCTTCCTCTTTCTTTG  143
            ||| |||| |  ||||||||||| ||||| | |||||||  | |||||||| |  || ||
Sbjct  61   AACTAGCTGC-GAAGCTACTCTTCGGTAATAGCAATCTC-TTGCTCTTCCTATGCCTCTG  118

Query  144  CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTCTC  203
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  119  CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTTGAGCTCTCACTCCAAACCACTGTCTC  178

Query  204  ACTCGCTTCCACA-TACATCTCCAAACTAGTCAATTCT-G-AGGAGGACTTGTCGGAGAA  260
             ||| ||||| || | | ||| ||||||| ||| | || | || |||||||| | |||||
Sbjct  179  TCTCACTTCC-CAATTCCTCTTCAAACTACTCACT-CTTGGAG-AGGACTTGCCAGAGAA  235

Query  261  TGATCT  266
            ||||||
Sbjct  236  TGATCT  241


> Ahg921441 jgi|Araly1|921441|scaffold_102722.1
Length=1108

 Score =  207 bits (112),  Expect = 1e-52
 Identities = 383/506 (76%), Gaps = 50/506 (10%)
 Strand=Plus/Plus

Query  38   AAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGT-CATCGAAC-TACTAAAACGAGC-TC  94
            ||| |||||  |||| ||||||| | ||| || | |||| ||| |||| ||||||||  |
Sbjct  14   AAA-GGAGATGAAGATCGAGGAGGATCTAGGT-TACATC-AACGTACTCAAACGAGCAAC  70

Query  95   TTAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCCTCTTTCTTTGCTCTCTCCCAC  154
              ||||| || |  |||||||||||||||| |||||||||||  |||||||||||||| |
Sbjct  71   -AAAGCTTCTATGGGGTAACATCAATCTCGTTCTCTTCCTCTGCCTTTGCTCTCTCCCTC  129

Query  155  TGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTCTCACTCGCTTC-C  213
            | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  130  TCTTTTGTTTCTTGATCTTCTTCGAGCTCTCACTCCAAACCACTGTCTCACTCGCTTCTC  189

Query  214  ACATACATC-TCC-A-AACT-A------G---T--C-A--A--TTC-T-GAGGAG--GAC  249
            | |||| || | | | |||| |      |   |  | |  |  ||| | |||  |  | |
Sbjct  190  A-ATACCTCGTTCGACAACTCAATAATTGGAATTACTACTACGTTCCTCGAGTTGCTGCC  248

Query  250  TTGTCGGAGAATGATCTTCTTCC-TTGGCTGATTCAGACAACTCTGCTCTACTTCTTTCC  308
            ||||||||||||   || ||||| ||| || || ||||||  ||| |||||||| || ||
Sbjct  249  TTGTCGGAGAAT---CTGCTTCCATTG-CTTATCCAGACATTTCTACTCTACTTGTT-CC  303

Query  309  C-TATA-CTATTCTTGACCTCCTTACCACCACCACGATCGT-TGCAGCATCATCGATTGC  365
            | || | |  |||| |||||||| ||||||||||  || || | | ||||| | ||||| 
Sbjct  304  CGTACAGCC-TTCTAGACCTCCTCACCACCACCATAATGGTCTCC-GCATCTTGGATTG-  360

Query  366  TT-ACACATCTGAGGAAGAGCCGTTAGGGTT-GCTTTATTTGGTAGGGAGATCTTTCA-A  422
            || |||| || | ||| || |||||| |||| | |  ||| |||  ||||| |  | | |
Sbjct  361  TTCACACGTCCGGGGAGGAACCGTTAAGGTTCGGTCAATT-GGTTCGGAGAACCGT-AGA  418

Query  423  GCTATGTCAGAACAAAGTAGGAGGTTGTCTGATCACATCTCTCTATGTCCTTCTCTTGTC  482
            | ||||||| |||| | | | ||||||||||||||| ||||| ||  |||||||  ||||
Sbjct  419  GATATGTCAAAACAGACTTGAAGGTTGTCTGATCACCTCTCTGTACATCCTTCTGATGTC  478

Query  483  GACCTCTGTTTTCCTCGGTTTGTTCT  508
             ||| ||||| || | ||||| ||||
Sbjct  479  AACCCCTGTTCTCTTTGGTTTCTTCT  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40219677435


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5