BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24020.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472662 jgi|Araly1|472662|fgenesh2_kg.1__2616__AT1G24020.1 894 0.0
Ahg912355 jgi|Araly1|912355|Al_scaffold_0001_2609 444 5e-124
> Ahg472662 jgi|Araly1|472662|fgenesh2_kg.1__2616__AT1G24020.1
Length=597
Score = 894 bits (484), Expect = 0.0
Identities = 540/566 (95%), Gaps = 7/566 (1%)
Strand=Plus/Plus
Query 1 TATACAAACAAATCATTCAAAGACATAC-AA-AATAATTGAGttttttttttAATTAGAA 58
|||||||||||||||||||||||||||| || ||||||||||| ||||| | || ||| |
Sbjct 1 TATACAAACAAATCATTCAAAGACATACAAATAATAATTGAGTCTTTTTGTAAACTAG-A 59
Query 59 ACAAATGGGGTTGAGTGGTGTTCTTCATGTGGAGGTTGAGGTTAAGTCTCCGGCTGAAAA 118
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 A-AAATGGGATTGAGTGGTGTTCTTCATGTGGAGGTTGAGGTTAAGTCTCCGGCTGAAAA 118
Query 119 GTTCTGGGTAGCCCTTGGCGACGGCATCAATCTCTTCCCCAAAGCTTTCCCTAACGACTA 178
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 GTTCTGGGTAGCCCTCGGCGACGGCATCAACCTCTTCCCCAAAGCTTTCCCTAACGACTA 178
Query 179 CAAAACCATCCAAGTTCTAGCCGGCGATGGCAACGCTCCTGGCTCCATTCGCCTCATTAC 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 CAAAACCATCCAAGTTCTAGCCGGCGATGGAAACGCTCCTGGCTCCATTCGCCTCATTAC 238
Query 239 TTATGGAGAAGGATCTCCACTGGTGAAGATATCGGCGGAGAGGATCGAAGCAGTGGATTT 298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 TTATGGAGAAGGATCTCCACTGGTGAAGATATCGGCTGAGAGGATCGAAGCAGTGGATTT 298
Query 299 GGAGAACAAAAGCATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAAC 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGAGAACAAAAGCATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAAA 358
Query 359 CTTCAAAGGAACCATCACCGTTATCCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCTGG 418
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 359 GTTCAAAGGAACCATCACCGTTATTCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCCGG 418
Query 419 TGAGTTTGAGAAGACCGCCCATGAGATCGATGATCCACATGTCATCAAGGACTTTGCTGT 478
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 419 TGAGTTTGAGAAGACCGCCCATGAGATCGATGACCCACACGTCATCAAGGACTTTGCTGT 478
Query 479 CAAGAACTTCAAAGAGATAGATGAGTATCTTCTTAAGCAAACTAGTGCCTAACACTAGAA 538
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 479 CAAGAACTTCAAAGAGATAGATGAGTATCTCCTTAAGCAATCTAGTGCCTAAAACTAGAA 538
Query 539 C---CTTTAAATTATATAAGAGGGTT 561
||||||||||||||||||||||
Sbjct 539 ATATCTTTAAATTATATAAGAGGGTT 564
> Ahg912355 jgi|Araly1|912355|Al_scaffold_0001_2609
Length=279
Score = 444 bits (240), Expect = 5e-124
Identities = 267/280 (95%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 252 TCTCCACTGGTGAAGATATCGGCGGAGAGGATCGAAGCAGTGGATTTGGAGAACAAAAGC 311
||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 TCTCCACTGGTGAAGATGTTGGCTGAGAGGATTGAAGCAGTGGATTTGGAGAACAAAAGC 60
Query 312 ATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAACCTTCAAAGGAACC 371
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAACTTTCAAAGGAACC 120
Query 372 ATCACC-GTTATCCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCTGGTGAGTTTGAGAA 430
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ATCACCTGT-ATTCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCCGGTGAGTTTGAGAA 179
Query 431 GACCGCCCATGAGATCGATGATCCACATGTCATCAAGGACTTTGCTGTCAAGAACTTCAA 490
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 180 GACCGCCCATGAGATCGATGACCCACACGTCATCAAGGACTTTGCTGTCAAGAACTTCAA 239
Query 491 AGAGATAGATGAGTATCTTCTTAAGCAAACTAGTGCCTAA 530
|||||||||||||||||| ||||||||| |||||||||||
Sbjct 240 AGAGATAGATGAGTATCTCCTTAAGCAATCTAGTGCCTAA 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5