BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24140.1 Length=1343 Score E Sequences producing significant alignments: (Bits) Value Ahg921472 jgi|Araly1|921472|scaffold_102753.1 1700 0.0 Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1 460 9e-129 > Ahg921472 jgi|Araly1|921472|scaffold_102753.1 Length=1205 Score = 1700 bits (920), Expect = 0.0 Identities = 1115/1209 (92%), Gaps = 14/1209 (1%) Strand=Plus/Plus Query 83 TTTTAATATTTCTCTTTTGGATGGTGAGGATTTGTGTTTTCATGGTTTTCTTGTTGTTCT 142 ||||||| ||| | ||| ||| ||||||||| ||||| | ||||||||||| |||||| Sbjct 1 TTTTAATCTTTTTGTTTCAAATGATGAGGATTTATGTTTCCGTGGTTTTCTTGGTGTTCT 60 Query 143 TCGCTCCTTCTCCAGTCTCCGCTGGTTTCTATACAAACTCCTCAGCCATTCCGCCGCAGC 202 | | ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||| Sbjct 61 TTGTTCCTTCTCCAGTCTCTGCTGGTTTCTACCCCAACTCCTCAGCCATTCCGCCGGAGC 120 Query 203 TTCTCCGAAACGCCACCGGGAACCCCTGGAACTCATTCTTGAATTTCACTGGATGTCACG 262 ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 121 TTCTCCGTAACGCCACCGGAAACCCCTGGAACTCATTCTTGAATTTCACCGGATGTCATG 180 Query 263 CCGGCAAGAAGTACGATGGTCTCTATATGCTCAAACAATATTTTCAACATTTTGGCTACA 322 |||||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||||| Sbjct 181 CCGGCAAGAAATACGATGGTCTCTACAAGCTTAAACAATATTTCCAACATTTTGGCTACA 240 Query 323 TCACCGAAACTAATCTCTCCGGAAACTTCACTGACGACTTCGACGATATTCTCAAGAACG 382 || || ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 241 TCCCCAAAACTGATCTCTCCGGAAACTTCACAGACGACTTCGACGATATCCTCAAGAACG 300 Query 383 CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA 360 Query 443 CTCTCAAACACGTTGTGATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA 502 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 361 CTCTCAAACACGTCGTGATCCCGCGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA 420 Query 503 CTATGCATAGCGGTAGGAAAACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGCTTCC 562 |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| Sbjct 421 CTATGCATAGCGGTAGAAAAACCTTCGAGGTCTCCTTCGCCGGGCGGGGACAACACTTCC 480 Query 563 ACGCCGTTAAACACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTG 622 || | || ||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 481 ACACTGTCAAACACTACTCTTTCTTCCCCGGTGAGCCACGGTGGCCGAGAAATCGCCGTG 540 Query 623 ATCTAACCTACGCTTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCT 682 ||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||||| Sbjct 541 ATCTAACATACGCTTTCGACCCGCGAAACTCGTTGACAGAAGAGGTCAAGAGTGTGTTCT 600 Query 683 CACGCGCTTTCACTCGTTGGGAGGAGGTGACTCCACTAACGTTCACACGCGTGGAGAGGT 742 ||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||| |||| Sbjct 601 CACGCGCGTTCGCTCGTTGGGCGGAGGTGACTCCACTAACGTTCACGCGCGTGGAAAGGT 660 Query 743 TCTCGACCTCTGACATCAGCATCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGT 802 |||||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| | Sbjct 661 TCTCGACCTCCGACATAAGCATCGGATTCTACTCCGGCGAACACGGCGACGGAGAACCAT 720 Query 803 TCGACGGCCCAATGAGAACGCTAGCACATGCGTTCTCGCCCCCGACGGGACACTTCCATC 862 | |||||||||||||||||||||||||| || |||||||||||||| ||| ||||||| | Sbjct 721 TTGACGGCCCAATGAGAACGCTAGCACACGCATTCTCGCCCCCGACAGGATACTTCCACC 780 Query 863 TAGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGT-G 921 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 781 TAGACGGAGAAGAGAACTGGATCGTCTCCGGTGAAGGAGGCGACGGTTTTATCTCCGTCG 840 Query 922 TCTGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTA 981 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 841 A-TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATCGGACATCTTCTAGGGTTA 899 Query 982 GGCCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAA 1041 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 900 GGCCATTCCTCGGTGGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGACGTAAA 959 Query 1042 GTTGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAAC 1101 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 960 GTTGCTTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGGGAATCCTAAC 1019 Query 1102 TTCAATGGTTCTAGATCTCCACCACCGTCCACTCAACAACGAGACACTGGCGATTCTGGT 1161 || || || |||||||||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 1020 TTTAACGGCTCTAGATCTCCATCACCGTCTACTCAACAACGAGACACTGGCGATTCCGGT 1079 Query 1162 GCTCCTGGTAGAAGCGACGGTTCTAGATCGGTTTTGACTAATCTACTTCAGtattatttt 1221 ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1080 GCTGCTGGTAGAAACGACGGTTCTAGATCGGTTTTGACTAATCTACTTCTGTATTAT--- 1136 Query 1222 tggattatatttggattatttttgtatttagtgtagatgattggattagttcattaATTT 1281 ||| | |||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 1137 ---ATT-T----GGATTATTTTCGTATTTAGTGTAGATGATTGGATTAGTTCAT-AATTT 1187 Query 1282 ACAGATTAT 1290 ||||||||| Sbjct 1188 ACAGATTAT 1196 > Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1 Length=1487 Score = 460 bits (249), Expect = 9e-129 Identities = 752/987 (76%), Gaps = 66/987 (7%) Strand=Plus/Plus Query 228 CTGGAACTCATTCTTGAATTTCACTGGATGTCACGC-CGG-CAAGAA-GTACGATGGTCT 284 |||| || | |||| ||||| || || |||||| | ||| ||| || || || ||||| Sbjct 246 CTGGGACGCTTTCTCCAATTTTACCGGTTGTCAC-CACGGCCAA-AACGT-TGAAGGTCT 302 Query 285 CTATATGC-TCAAACAATATTTTCAACATTTTGGCTACATCACC-GAAACTAATCTCTCC 342 ||| || ||||| |||| || |||| |||||| |||||| || ||||| | | || Sbjct 303 CTA-CCGCATCAAAAAATACTTCCAACGTTTTGGTTACATC-CCTGAAAC--GT-TTTCA 357 Query 343 GGAAACTTCACTGACGACTTCGACGATATTCTCAAGAAC-GCCGTCGAAATGTACCAGAG 401 ||||| ||||| || || || || ||||| ||||| ||| || || ||| |||| ||||| Sbjct 358 GGAAATTTCACCGATGATTTTGATGATATCCTCAA-AACAGCTGTTGAATTGTATCAGAG 416 Query 402 AAACTTCCAGCTAAACGTCACCGGAGTA-CTCGACGAGCTCACTC-TCAAACACGTTGTG 459 || ||| |||| ||||| || |||| | ||||| | | || | | |||||| | ||| Sbjct 417 GAATTTCAAGCTTAACGTTACGGGAG-AGCTCGATGCTATGAC-CATTAAACACATCGTG 474 Query 460 ATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAACT-ATGCATAGCGGTAG 518 ||||| ||||| || || |||||||| |||||||| || || | |||||| |||| || Sbjct 475 ATCCCGCGTTGTGGTAATCCCGACGTGGTCAACGGTACTTC-TTTGATGCATGGCGGGAG 533 Query 519 --GAAA-ACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGC--TTCCACGCCGTTAAA 573 |||| ||||||||||| |||| || | | | |||| || ||||| |||||| Sbjct 534 AAGAAAGACCTTCGAGGTCAACTTCTCC---C---G-C-ACGCATTTGCACGCGGTTAAA 585 Query 574 CACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTGATC-TAACCTA 632 | |||| | || ||||| || |||||||||||||| ||||| || ||||| | | ||||| Sbjct 586 CGCTACACGTTGTTCCCAGGCGAGCCACGGTGGCCAAGAAACCGCCGTGA-CTTGACCTA 644 Query 633 CGC-TTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCTCACGCGCTT 691 ||| ||| |||||| |||| | ||||| ||||||||||||||||||||||||||||||| Sbjct 645 CGCGTTT-GACCCGAAAAACCCCTTGACAGAAGAGGTCAAGAGCGTGTTCTCACGCGCTT 703 Query 692 TCA-CTCGTTGGGAGGAGGTGACTC-CACT-AACGTTCACACGCGTGGAGAGG-TT-CTC 746 || | |||||| ||| || || | | | ||| ||||| || | || || ||| Sbjct 704 TCGGC-CGTTGGTCGGACGTCAC-CGCGTTGAAC-TTCAC--GCTTTCCGACTCTTTCTC 758 Query 747 GACCTCTGACATCAGCA-TCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGTTCG 805 ||| || ||||||| || ||||||||||| |||| || ||||| ||||| || || |||| Sbjct 759 GACGTCCGACATCA-CAATCGGATTCTACACCGGCGATCACGGTGACGGCGAGCCTTTCG 817 Query 806 ACGGCCCAATGAGAACGCT-AGCACATGCGTTCTCGCCCCCGA-CGGGACACTTCCATCT 863 ||||| || |||| || ||| || || ||||| || || | ||||| | ||||| || Sbjct 818 ACGGCGTTTTGGGAAC-CTTAGCTCACGCTTTCTCTCCTCCTAGCGGGAAA-TTCCACCT 875 Query 864 AGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGTGTC 923 ||||| ||| ||||||||| | |||||||| || || | | | ||| ||||||| | Sbjct 876 AGACGCAGACGAGAACTGGGTGGTCTCCGGAGACCTAGAC-A-G-TTTCCTCTCCGTAAC 932 Query 924 TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTAGG 983 || || |||||||| |||||||| || ||||||||||| || |||||||| || ||||| Sbjct 933 TGCTGCGGTTGATCTTGAATCGGTAGCGGTTCACGAGATCGGTCATCTTCTCGGTTTAGG 992 Query 984 CCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAAGT 1043 ||||| || || |||| || |||||||||||||| |||| |||||| | ||||| || Sbjct 993 ACATTCGTCAGTTGAAGAATCCATCATGTATCCAACGATCACGACGGGGAAACGTAAGGT 1052 Query 1044 TGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAACTT 1103 ||| ||||| | ||||||||||||||| ||||||| |||||||| ||||| |||||||| Sbjct 1053 TGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGCGCGAACCCTAACTT 1112 Query 1104 CAATGGTTCTAGATCTCCACCACCGTCCACTCA-ACA--A-CGAGACACTGGCGA-TTCT 1158 ||| || | | ||||||||| || ||||| | ||| | ||||||||||| | ||| Sbjct 1113 CAACGGCACAACATCTCCACCGTCGACCACT-AGACACCAGCGAGACACTGGTGGCTTCA 1171 Query 1159 GGTGCT-CCTGGTAGAAGCGACGGTTC 1184 | ||| ||||| |||| ||||||||| Sbjct 1172 G-TGCCGCCTGG-AGAATCGACGGTTC 1196 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50246004606 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5