BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24140.1

Length=1343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921472 jgi|Araly1|921472|scaffold_102753.1                       1700    0.0   
  Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1         460    9e-129


> Ahg921472 jgi|Araly1|921472|scaffold_102753.1
Length=1205

 Score = 1700 bits (920),  Expect = 0.0
 Identities = 1115/1209 (92%), Gaps = 14/1209 (1%)
 Strand=Plus/Plus

Query  83    TTTTAATATTTCTCTTTTGGATGGTGAGGATTTGTGTTTTCATGGTTTTCTTGTTGTTCT  142
             ||||||| ||| | |||   ||| ||||||||| ||||| | ||||||||||| ||||||
Sbjct  1     TTTTAATCTTTTTGTTTCAAATGATGAGGATTTATGTTTCCGTGGTTTTCTTGGTGTTCT  60

Query  143   TCGCTCCTTCTCCAGTCTCCGCTGGTTTCTATACAAACTCCTCAGCCATTCCGCCGCAGC  202
             | | ||||||||||||||| |||||||||||  | ||||||||||||||||||||| |||
Sbjct  61    TTGTTCCTTCTCCAGTCTCTGCTGGTTTCTACCCCAACTCCTCAGCCATTCCGCCGGAGC  120

Query  203   TTCTCCGAAACGCCACCGGGAACCCCTGGAACTCATTCTTGAATTTCACTGGATGTCACG  262
             ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct  121   TTCTCCGTAACGCCACCGGAAACCCCTGGAACTCATTCTTGAATTTCACCGGATGTCATG  180

Query  263   CCGGCAAGAAGTACGATGGTCTCTATATGCTCAAACAATATTTTCAACATTTTGGCTACA  322
             |||||||||| |||||||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct  181   CCGGCAAGAAATACGATGGTCTCTACAAGCTTAAACAATATTTCCAACATTTTGGCTACA  240

Query  323   TCACCGAAACTAATCTCTCCGGAAACTTCACTGACGACTTCGACGATATTCTCAAGAACG  382
             || || ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  241   TCCCCAAAACTGATCTCTCCGGAAACTTCACAGACGACTTCGACGATATCCTCAAGAACG  300

Query  383   CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA  442
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301   CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA  360

Query  443   CTCTCAAACACGTTGTGATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA  502
             ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  361   CTCTCAAACACGTCGTGATCCCGCGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA  420

Query  503   CTATGCATAGCGGTAGGAAAACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGCTTCC  562
             |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct  421   CTATGCATAGCGGTAGAAAAACCTTCGAGGTCTCCTTCGCCGGGCGGGGACAACACTTCC  480

Query  563   ACGCCGTTAAACACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTG  622
             || | || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  481   ACACTGTCAAACACTACTCTTTCTTCCCCGGTGAGCCACGGTGGCCGAGAAATCGCCGTG  540

Query  623   ATCTAACCTACGCTTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCT  682
             ||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct  541   ATCTAACATACGCTTTCGACCCGCGAAACTCGTTGACAGAAGAGGTCAAGAGTGTGTTCT  600

Query  683   CACGCGCTTTCACTCGTTGGGAGGAGGTGACTCCACTAACGTTCACACGCGTGGAGAGGT  742
             ||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct  601   CACGCGCGTTCGCTCGTTGGGCGGAGGTGACTCCACTAACGTTCACGCGCGTGGAAAGGT  660

Query  743   TCTCGACCTCTGACATCAGCATCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGT  802
             |||||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| |
Sbjct  661   TCTCGACCTCCGACATAAGCATCGGATTCTACTCCGGCGAACACGGCGACGGAGAACCAT  720

Query  803   TCGACGGCCCAATGAGAACGCTAGCACATGCGTTCTCGCCCCCGACGGGACACTTCCATC  862
             | |||||||||||||||||||||||||| || |||||||||||||| ||| ||||||| |
Sbjct  721   TTGACGGCCCAATGAGAACGCTAGCACACGCATTCTCGCCCCCGACAGGATACTTCCACC  780

Query  863   TAGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGT-G  921
             ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  781   TAGACGGAGAAGAGAACTGGATCGTCTCCGGTGAAGGAGGCGACGGTTTTATCTCCGTCG  840

Query  922   TCTGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTA  981
               ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  841   A-TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATCGGACATCTTCTAGGGTTA  899

Query  982   GGCCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAA  1041
             |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  900   GGCCATTCCTCGGTGGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGACGTAAA  959

Query  1042  GTTGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAAC  1101
             |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  960   GTTGCTTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGGGAATCCTAAC  1019

Query  1102  TTCAATGGTTCTAGATCTCCACCACCGTCCACTCAACAACGAGACACTGGCGATTCTGGT  1161
             || || || |||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct  1020  TTTAACGGCTCTAGATCTCCATCACCGTCTACTCAACAACGAGACACTGGCGATTCCGGT  1079

Query  1162  GCTCCTGGTAGAAGCGACGGTTCTAGATCGGTTTTGACTAATCTACTTCAGtattatttt  1221
             ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||   
Sbjct  1080  GCTGCTGGTAGAAACGACGGTTCTAGATCGGTTTTGACTAATCTACTTCTGTATTAT---  1136

Query  1222  tggattatatttggattatttttgtatttagtgtagatgattggattagttcattaATTT  1281
                ||| |    |||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct  1137  ---ATT-T----GGATTATTTTCGTATTTAGTGTAGATGATTGGATTAGTTCAT-AATTT  1187

Query  1282  ACAGATTAT  1290
             |||||||||
Sbjct  1188  ACAGATTAT  1196


> Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1
Length=1487

 Score =  460 bits (249),  Expect = 9e-129
 Identities = 752/987 (76%), Gaps = 66/987 (7%)
 Strand=Plus/Plus

Query  228   CTGGAACTCATTCTTGAATTTCACTGGATGTCACGC-CGG-CAAGAA-GTACGATGGTCT  284
             |||| || | ||||  ||||| || || |||||| | ||| ||| || ||  || |||||
Sbjct  246   CTGGGACGCTTTCTCCAATTTTACCGGTTGTCAC-CACGGCCAA-AACGT-TGAAGGTCT  302

Query  285   CTATATGC-TCAAACAATATTTTCAACATTTTGGCTACATCACC-GAAACTAATCTCTCC  342
             |||   || ||||| |||| || |||| |||||| |||||| || |||||   | | || 
Sbjct  303   CTA-CCGCATCAAAAAATACTTCCAACGTTTTGGTTACATC-CCTGAAAC--GT-TTTCA  357

Query  343   GGAAACTTCACTGACGACTTCGACGATATTCTCAAGAAC-GCCGTCGAAATGTACCAGAG  401
             ||||| ||||| || || || || ||||| ||||| ||| || || ||| |||| |||||
Sbjct  358   GGAAATTTCACCGATGATTTTGATGATATCCTCAA-AACAGCTGTTGAATTGTATCAGAG  416

Query  402   AAACTTCCAGCTAAACGTCACCGGAGTA-CTCGACGAGCTCACTC-TCAAACACGTTGTG  459
              || ||| |||| ||||| || |||| | ||||| |   | || | | |||||| | |||
Sbjct  417   GAATTTCAAGCTTAACGTTACGGGAG-AGCTCGATGCTATGAC-CATTAAACACATCGTG  474

Query  460   ATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAACT-ATGCATAGCGGTAG  518
             ||||| ||||| || || |||||||| |||||||| || ||   | |||||| |||| ||
Sbjct  475   ATCCCGCGTTGTGGTAATCCCGACGTGGTCAACGGTACTTC-TTTGATGCATGGCGGGAG  533

Query  519   --GAAA-ACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGC--TTCCACGCCGTTAAA  573
               |||| |||||||||||   |||| ||   |   | | ||||  || ||||| ||||||
Sbjct  534   AAGAAAGACCTTCGAGGTCAACTTCTCC---C---G-C-ACGCATTTGCACGCGGTTAAA  585

Query  574   CACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTGATC-TAACCTA  632
             | |||| | || ||||| || |||||||||||||| ||||| || ||||| | | |||||
Sbjct  586   CGCTACACGTTGTTCCCAGGCGAGCCACGGTGGCCAAGAAACCGCCGTGA-CTTGACCTA  644

Query  633   CGC-TTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCTCACGCGCTT  691
             ||| ||| ||||||  |||| | ||||| |||||||||||||||||||||||||||||||
Sbjct  645   CGCGTTT-GACCCGAAAAACCCCTTGACAGAAGAGGTCAAGAGCGTGTTCTCACGCGCTT  703

Query  692   TCA-CTCGTTGGGAGGAGGTGACTC-CACT-AACGTTCACACGCGTGGAGAGG-TT-CTC  746
             ||  | ||||||  ||| || || | |  | ||| |||||  || |   ||   || |||
Sbjct  704   TCGGC-CGTTGGTCGGACGTCAC-CGCGTTGAAC-TTCAC--GCTTTCCGACTCTTTCTC  758

Query  747   GACCTCTGACATCAGCA-TCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGTTCG  805
             ||| || ||||||| || ||||||||||| |||| || ||||| ||||| || || ||||
Sbjct  759   GACGTCCGACATCA-CAATCGGATTCTACACCGGCGATCACGGTGACGGCGAGCCTTTCG  817

Query  806   ACGGCCCAATGAGAACGCT-AGCACATGCGTTCTCGCCCCCGA-CGGGACACTTCCATCT  863
             |||||    || |||| || ||| || || ||||| || || | ||||| | ||||| ||
Sbjct  818   ACGGCGTTTTGGGAAC-CTTAGCTCACGCTTTCTCTCCTCCTAGCGGGAAA-TTCCACCT  875

Query  864   AGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGTGTC  923
             ||||| ||| ||||||||| | |||||||| ||   || | | | |||  |||||||  |
Sbjct  876   AGACGCAGACGAGAACTGGGTGGTCTCCGGAGACCTAGAC-A-G-TTTCCTCTCCGTAAC  932

Query  924   TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTAGG  983
             ||  || |||||||| |||||||| || ||||||||||| || |||||||| || |||||
Sbjct  933   TGCTGCGGTTGATCTTGAATCGGTAGCGGTTCACGAGATCGGTCATCTTCTCGGTTTAGG  992

Query  984   CCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAAGT  1043
              ||||| || || ||||  || |||||||||||||| |||| |||||| |  ||||| ||
Sbjct  993   ACATTCGTCAGTTGAAGAATCCATCATGTATCCAACGATCACGACGGGGAAACGTAAGGT  1052

Query  1044  TGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAACTT  1103
             ||| ||||| |  ||||||||||||||| ||||||| |||||||| ||||| ||||||||
Sbjct  1053  TGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGCGCGAACCCTAACTT  1112

Query  1104  CAATGGTTCTAGATCTCCACCACCGTCCACTCA-ACA--A-CGAGACACTGGCGA-TTCT  1158
             ||| ||  | | |||||||||  || ||||| | |||  | ||||||||||| |  ||| 
Sbjct  1113  CAACGGCACAACATCTCCACCGTCGACCACT-AGACACCAGCGAGACACTGGTGGCTTCA  1171

Query  1159  GGTGCT-CCTGGTAGAAGCGACGGTTC  1184
             | |||  ||||| |||| |||||||||
Sbjct  1172  G-TGCCGCCTGG-AGAATCGACGGTTC  1196



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50246004606


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5