BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24310.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value Ahg472914 jgi|Araly1|472914|fgenesh2_kg.1__2868__AT1G24310.1 2294 0.0 Ahg942385 jgi|Araly1|942385|scaffold_602929.1 1192 0.0 > Ahg472914 jgi|Araly1|472914|fgenesh2_kg.1__2868__AT1G24310.1 Length=1461 Score = 2294 bits (1242), Expect = 0.0 Identities = 1396/1469 (95%), Gaps = 15/1469 (1%) Strand=Plus/Plus Query 20 CCGAGAATTCCGTCGAACACTTGAGCTGCGTTTTAAAGTTCTCCAAATGGCGCCTTTTGC 79 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 CCGAGAATTCCGTCGAACGCTTGAGCTGCGTTTTAAAGTTCTCCGAATGGCGCCTTTTGC 60 Query 80 CT-ACTAAAAAACCTTTACCTTCTTCACAGAGATCTAACCTCTCCTTTTCCCAATGTTCG 138 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAAC-AAAAAACCTTTACCTTCTTCACAGAGATCTAACCTCTCCTTTTCCCAATGTTCG 119 Query 139 GCACTCCGTCTTCATCGCCGTCATTCGGCACTCCGTCATCCACACCCGCCTTTGGCACAT 198 |||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || | Sbjct 120 GCACTCCGTCATCCTCGCCGTCCTTCGGCACTCCGTCGTCCACACCCGCCTTTGGTACGT 179 Query 199 CTTCTCCGGCGTTCGGTACACCGTCAGCTACGCCTGCGTTCGGTACGCCATCGAATCCTT 258 |||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||| ||||| Sbjct 180 CTTCACCGGCGTTCGGTACACCATCAGCCACGCCTGCGTTCGGAACGCCGTCGGTTCCTT 239 Query 259 CCTTCTCCTCCGGCGGATTTGGCTCTTCACTCTTCTCGT-CTCCCTTCTCATCTcaacag 317 ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct 240 CCTTCTCCTCCGGCGGATTTGGCTCCTCACTCTTCTC-TACTCCCTTCTCATCTCAACAG 298 Query 318 ccacagcaacaacaacaaca--a-caacagcagcagcagcCGAGTTCACTGTTTCAGCAA 374 |||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||| Sbjct 299 CCACAGCAACAACAGCAACAGCAGCAACAACAGCAGCAGCCGAGTTCACTGTTTCAGCAA 358 Query 375 CAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCAACAACACCGCTCAGCAGCAGCAG 434 ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 359 CAGCCATCTTCTAGTTTTGGTTTTCAGTCACCATTCAACAACACCGCT------CAGCAG 412 Query 435 CAAACGCC-TTTCCCAAATGCTCAATTGACTACTCAGATGGCTCCCGTTGCTCCAATTCC 493 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 CAAACGCCGTTT-CCAAATGCTCAATTGACTACTCAGATGGCTCCCGTTGCTCCAATTCC 471 Query 494 TTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTGAAGCTTATAAGGAAGATCCAAC 553 ||||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||| || Sbjct 472 TTACTCTCTCGCCGATCGTGACGTCCAGGTTATCATTGAAGCGTATAAGGAAGGTCCGAC 531 Query 554 GAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTGTGACTGAACCACAGTACCGGGT 613 |||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| Sbjct 532 GAATCCCAAGTATGCTTTTCAGCATCTTTTGTTTAGCGTGACTGAACCACAGTACCGGGT 591 Query 614 GAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGGCCATGAGCAAACTTGAAGGTAT 673 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || Sbjct 592 GAAGCCTGCAGCTGTTTCAGATATAATGTGGGCAGAGGCTATGAGCAAACTTGAAGGCAT 651 Query 674 GGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTGTGCAAGGTTTCAAAGATCTCTC 733 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 652 GGATTCAACAGAAAGAGAGCGCCTGTGGCCTCAGCTTGTGCAAGGTTTCAAAGATCTTTC 711 Query 734 TCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAGATAGGGATAGAATAAAAACGAC 793 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 712 TCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGCCTCAGATAGGGATAGAATAAAAACGAC 771 Query 794 TCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAGCATCAACCTTCCCATCTATTGA 853 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 772 TCAGAGCAATGTTAAAATGCTCCAGAGACATTTGCAAGCATCAACCTTTCCATCTATTGA 831 Query 854 AAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCATGTTGAGGGTGATGAGGATTAT 913 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 832 AAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCATGTTGAGGGTGATGAGGATAAT 891 Query 914 AGAAGGCTTAGAAGGGAAGGGTTTCCGGTTACCCTTGACGAAAGGAGAGGCCGAACTGTC 973 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 892 AGAGGGCTTAGAAGGGAAGGGTTTCCGGTTACCCTTGACAAAAGGAGAGGCCGAACTGTC 951 Query 974 TGAGAAGTTAACTGCAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCTAGGAG 1033 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 TGAGAAGTTAACTGCAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCTAGGAG 1011 Query 1034 GGTGCAAAGTCTGCAGACGATATCTCGTGCTCAAGCAAATTCAATTGCTGCTGGTAGTTC 1093 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 GGTGCAAAGTCTGCAGACAATATCTCGTGCTCAAGCAAATTCAATTGCTGCTGGTAGTTC 1071 Query 1094 CCTTTATCTCCCTGGGTCAACTAAAATAGACGAGCAGAGCTTGATAGATATGCAGGAGGT 1153 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1072 CCTTTATCTCCCTGGGTCAACTAAAATAGATGAGCAGAGCTTGATAGATATGCAGGAGGT 1131 Query 1154 ATTGCAACAAGAGACAGAAGCCATAGGAAGACTTGGGAACGTATTGAAGCGAGACATGAG 1213 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1132 ATTGCAACAGGAGACAGAAGCCATAGGAAGGCTTGGGAACGTATTGAAGCGAGACATGAG 1191 Query 1214 GGATATGGAAATCATGGTGGCTGAAGATACAGAAATGGCACTAGACTCATAGAAGCGAAT 1273 |||||||||||||||||||||||||||||||||||||| | ||| ||||||||| | || Sbjct 1192 AGATATGGAAATCATGGTGGCTGAAGATACAGAAATGGCTCAAGATTCATAGAAGTGGAT 1251 Query 1274 CTGCAATTACTCTAGTTTCGAAGTTCTCTTATCCTTTACCATCTCCTGGATGCGCACATT 1333 |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || Sbjct 1252 CTGCAATTACTCTAGTTTCGAAGTTCTCCTATCCTTTACTATCTCCTGGATGCGCACGTT 1311 Query 1334 GTTATGCTCAGAAACGACAAGGCTAGCTTTGGACTTTAACATGTACGTAGTAGCTGAGCT 1393 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1312 GTTATGCTCAGAAACGACAAGGCTAGCTTTGGACTTTAACGTGTACGTAGTAGCTGAGCT 1371 Query 1394 ATAAATCTTGATGTATTGTGATATAGTTTTCATTAAAGCCTTTGAAAGAGACTGCCTTAT 1453 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1372 ATAAATCTTGATGTATTGTGATATAATTTTCATTAAAGCCTTTGGAAGAGACTGCCTTAT 1431 Query 1454 TTTGTTCACAAACACGAGCGGATAGTTTT 1482 ||||||| |||||||| || ||||| ||| Sbjct 1432 TTTGTTCTCAAACACGGGCAGATAGGTTT 1460 > Ahg942385 jgi|Araly1|942385|scaffold_602929.1 Length=832 Score = 1192 bits (645), Expect = 0.0 Identities = 743/788 (94%), Gaps = 15/788 (2%) Strand=Plus/Plus Query 112 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCTTCATCGCCGTCATTCGGCACTC 171 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCATCCTCGCCGTCATTCGGCACTC 60 Query 172 CGTCATCCACACCCGCCTTTGGCACATCTTCTCCGGCGTTCGGTACACCGTCAGCTACGC 231 |||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||| Sbjct 61 CGTCGTCCACACCCGCCTTTGGTACGTCTTCACCGGCGTTCGGTACACCATCAGCCACGC 120 Query 232 CTGCGTTCGGTACGCCATCGAATCCTTCCTTCTCCTCCGGCGGATTTGGCTCTTCACTCT 291 |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| Sbjct 121 CTGCGTTCGGTACGCCGTCGGTTCCTTCCTTCTCCTCCGGCGGATTTGGCTCCTCACTCT 180 Query 292 TCTCGTCTCCCTTCTCATCTcaacagccacagcaacaacaacaacaacaacagcagcagc 351 ||||| ||||||||||||| |||||||||||| |||||||| | | | ||||||| Sbjct 181 TCTCGACTCCCTTCTCATCGCAACAGCCACAG------CAACAACAGC-A-A-CAGCAGC 231 Query 352 agcCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCA 411 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 232 AGCCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAGTTTTGGTTTTCAGTCACCATTCA 291 Query 412 ACAACACCGCTCAGCAGCAGCAGCAAACGCCTTTCCCAAATGCTCAATTGACTACTCAGA 471 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 292 ACAACACCGCT------CAGCAGCAAACGCCGTTCCCAAATGCTCAATTGACTACTCAGA 345 Query 472 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTG 531 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 346 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGACGTCCAGGCCATCATTG 405 Query 532 AAGCTTATAAGGAAGATCCAACGAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTG 591 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct 406 AAGCTTATAAGGAAGATCCGACGAATCCCAAGTATGCTTTTCAGCATCTTTTGTTTAGTG 465 Query 592 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 525 Query 652 CCATGAGCAAACTTGAAGGTATGGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTG 711 | ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 526 CTATGAGCAAACTTGAAGGCATGGATTCAACAGAAAGAGAGCGCCTGTGGCCTCAGCTTG 585 Query 712 TGCAAGGTTTCAAAGATCTCTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAG 771 |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 586 TGCAAGGTTTTAAAGATCTTTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGCCTCAG 645 Query 772 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAG 831 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 646 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTCCAGAGACATTTGCAAG 705 Query 832 CATCAACCTTCCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 891 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 CATCAACCTTTCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 765 Query 892 TGTTGAGG 899 |||||||| Sbjct 766 TGTTGAGG 773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55802208925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5