BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24470.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472901 jgi|Araly1|472901|fgenesh2_kg.1__2855__AT1G24470.1 1600 0.0
> Ahg472901 jgi|Araly1|472901|fgenesh2_kg.1__2855__AT1G24470.1
Length=1042
Score = 1600 bits (866), Expect = 0.0
Identities = 974/1024 (95%), Gaps = 16/1024 (2%)
Strand=Plus/Plus
Query 1 ATGCAGGGAGCATGCATCTCCGAGAGTCAGCCATGGTATCTCCATTTCGTATGCTTCATA 60
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGCAGAGAGCATGCATCTCCGAGAGTCAGCCATGGCATCTCCATGTCGTATGCTTCATA 60
Query 61 GGCTTTCTCTTTCTCCTTAGAGTACTATTCATTCCTCTCCTAAAATGGTTCACCACAAGA 120
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 61 GGCTTTCTCTCTCTCCTTAGATTACTATTCATTCCTCTCCTAAAATGGTTCATCACCAGA 120
Query 121 TTCCTCCTCAC--A-CCCAAGCGGCTCAAGCGGTACGGCTCATGGGCTATGGTCACTGGA 177
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCTCCTCACAAACCCCAAGCGGCTCAAGCGGTACGGCTCATGGGCTATGGTCACTGGA 180
Query 178 GCCACCGAGGGGATCGGACGCGCCTTTGCTCACGAGCTGGCCAAACACGGCCTTAACCTC 237
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GCCACCGAGGGGATCGGACGTGCCTTTGCTTACGAGCTGGCCAAACACGGCCTTAACCTC 240
Query 238 ATCCTAGTCAGCAGAAACCTTTCGAAGCTCGAATCTGTCTCTGATGATTTCCAACAAGAG 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 ATCCTAGTCAGCAGAAACCTTTCGAAGCTCGAATATGTCTCTGATGATTTCCAACAAGAG 300
Query 298 TTTCCCCACATCAAGATCAAGATCATTCCATTTGACTTCTCCTCTGAAGGAGGATACGGA 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TTTCCCCATATCAAGATCAAGATCATTCCATTTGACTTCTCCTCTGAAGGAGGATATGGA 360
Query 358 GCAATCGAGGAAGGGATAAAAGGCCTTGAAGTTGGGATTTTGATAAACAACGTTGGTATT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GCAATCGAGGAAGGGATAAAAGGCCTTGAAGTTGGGATTTTGATAAACAACGTCGGTATT 420
Query 418 ACTTATCCACGCGCCATGTTCTTCCACGAGGTTGACCAACTTACATGGACCAAAATCCTG 477
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTATCCACGGGCCATGTTCTTCCACGAGGTTGACCAACTTACATGGACCAAAATCCTG 480
Query 478 AGGGTTAATCTTGAAGCCACCACTTGGGTCACACGATCACTCATCGGACCAATGCTTCAC 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AGGGTTAATCTTGAAGCCACCACTTGGGTCACACGATCACTCATCGGGCCAATGCTTCAC 540
Query 538 CGCCGCCGTGGAGCCATCGTCAATATTAGCTCCGGCGCTGCCGTTGTTGTCCCTTCTCAT 597
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CGCCGCCGAGGAGCCATCGTCAATATTAGCTCCGGTGCTGCCGTTGTTGTCCCTTCTCAT 600
Query 598 CCCCTCTACGCCATCTACGCTGCCACCAAAGCTTATGTGGATGCACTATCAAGATCTCTA 657
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 601 CCTCTCTACGCCATCTACGCCGCCACCAAAGCTTATGTTGATGCACTATCAAGATCTCTA 660
Query 658 CATGTGGAATATAAGCAGTTTGGTATTGATGTCCAGTGCCAGGTTCCCTTATACGT-GTC 716
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 661 CATGTGGAATATAAGCAGTTTGGTATTGATGTCCAGTGCCAGGTGCCCTTATACGTAG-C 719
Query 717 AACAAGGATGGTGTCAGAAGTGGCAGCTATAGACAAACCTAGCTTATTTGTACCGTCGCC 776
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 720 AACAAGGATGGTGTCAGAAGTGGCAGCTATAGACAAACCAAGCTTCTTTGTACCGTCGCC 779
Query 777 TGAAGTCTACGCAAAAGCGGCGGTGGCGCAGATCGGAATTGGATCACGTTGCTCGCCGTT 836
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 780 TGAAGTCTACGCAAAAGCGGCGGTGGAACAGATCGGAATTGGATCTCGTTGCTCGCCGTT 839
Query 837 TTGGGCTCATTCTCTTCAGTGGTTTCTTGTTGGACTTGTACCGGATAACCTTGTTGATAC 896
|||||||||||| ||||||||||||||||| ||| |||| ||||||| ||| ||||||||
Sbjct 840 TTGGGCTCATTCCCTTCAGTGGTTTCTTGTCGGATTTGTGCCGGATAGCCTCGTTGATAC 899
Query 897 TTGGCGTCTCTCTATCGGACTTCGCAGAAGAAGTT--T-ATCTTAA--TG---ATCAT-A 947
||||||||||||||||||||||||||||||||||| | ||||||| || || || |
Sbjct 900 TTGGCGTCTCTCTATCGGACTTCGCAGAAGAAGTTAATTATCTTAAAATGCTTATGATCA 959
Query 948 T-TTTCAAGTTTGTATTTGCTCCTCCACCTTTCGTGG-ATAAATATATGGCCCATTGGGC 1005
| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 TATTTCAAGTTTTTATTTGCTCCTCCACCTTTCGTGGGATAAATATATGGCCCATTGGGC 1019
Query 1006 CTGA 1009
||||
Sbjct 1020 CTGA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5