BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24530.1 Length=1479 Score E Sequences producing significant alignments: (Bits) Value Ahg921733 jgi|Araly1|921733|scaffold_103014.1 2073 0.0 > Ahg921733 jgi|Araly1|921733|scaffold_103014.1 Length=1297 Score = 2073 bits (1122), Expect = 0.0 Identities = 1240/1298 (96%), Gaps = 3/1298 (0%) Strand=Plus/Plus Query 40 TTACCAAACATCGAAACCACCATGAGGGTTATCTCAAAACTGTTCGATTCCGACAGAAGA 99 ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 3 TTACCAAACATCG-AA--ACCATGAGGGTTATCTCAAAGCTGTTCGATTCCGACAGAAGA 59 Query 100 CGAATACCCAAATCGCCGAAGCATTTGGATTCCGGCGAAAGCGCCACGTCATCTTCCTCA 159 |||| ||| ||||||||||||||||||||||||| ||||||| ||||| |||||| ||| Sbjct 60 CGAACACCGAAATCGCCGAAGCATTTGGATTCCGACGAAAGCTTCACGTTATCTTCATCA 119 Query 160 CTCAGCGACGTAACCACCGGCTCAAGCAGCCTTCATAGCAGTCTCTCTCTCCAAACGCTT 219 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 120 CTCAGCGACGTAACCACCGGCTCAAGCAGCCTCCATAGCAGTCTCTCTCTCCAGACGCTT 179 Query 220 CCTTCAGTTCCCTCTCTTCAGAAAATCCCATCCACCACCGTCACCGTCTCTCACTCCGTT 279 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CCTTCAGTTCCTTCTCTTCAGAAAATCCCATCCACCACCGTCACCGTCTCTCACTCCGTT 239 Query 280 ACCTCCTCGTTTAAACTCCGTGAACGGAGTCTTCCTGTAACTTGTCTCGCCGTCAATGGT 339 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 240 ACCTCCTCGTTTAAACTCCGTGAACGAAGTCTTCCTGTAACTTGTCTCGCCGTCAACGGT 299 Query 340 GGTTACCTCTTCGCCGTGTCTGGACACGAAGTAAGTATCTACGATCGCGACATGTGTGCT 399 || || ||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 300 GGCTATCTCTTTGCCGTTTCTGGACATGAAGTTAGTATCTACGATCGCGACATGTGTGCT 359 Query 400 CATCTCGACACATTCAACGGCCAAGATCCTTTCTCAGGAACCGTGAAGTCCGTCGGCTTC 459 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 360 CATCTAGACACATTCAACGGCCAAGATCCTTTCTCAGGAACCGTTAAGTCCGTCGGCTTC 419 Query 460 TCCGGTGAGAAAATCTTCACGGCGCATCAAGACGGTAAAATCGGAGTTTGGAAACTTACG 519 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 420 TCCGGTGAGAAAATTTTCACGGCGCATCAAGACGGTAAAATCGGAGTTTGGAAACTAACG 479 Query 520 GCGAAAAGCGGTTATAAACAGTTAACGACGCTTCCTACTTTAAACGACCGTTTACGACGT 579 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GCGAAGAGCGGTTATAAACAGTTAACGACGCTTCCTACTTTAAACGACCGTTTACGACGT 539 Query 580 TTCGCTCTTCCTAAAAACTACGTTCAAGTACGCCGTCATAAGAAACGTCTCTGGATCGAA 639 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TTCGCTCTTCCCAAAAACTACGTTCAAGTACGCCGTCATAAGAAACGTCTCTGGATCGAA 599 Query 640 CATGCTGACGCCGTTACTGCTCTCGCCGTTAGTGACGGATTCATTTACTCTGTTTCTTGG 699 ||||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| Sbjct 600 CATGCTGACGCCGTTACTGCTCTTGCCGTTAATAACGGATTTATTTACTCTGTTTCTTGG 659 Query 700 GATAAGACTTTGAAGATATGGAGAGCCTCCGATCTTCGTTGCAAAGAATCAATCAAAGCT 759 |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 660 GATAAGACCTTGAAGATATGGAGAGCCTCTGATCTTCGTTGCAAAGAGTCAATCAAAGCA 719 Query 760 CACGATGACGCCGTTAATGCCATTGCCGTTTCTACTAACGGCACCGTTTACACTGGATCC 819 ||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||| Sbjct 720 CACGATGACGCCGTTAATGCCGTCGCCGTCTCTACTAACGGCACCGTTTATACTGGATCC 779 Query 820 GCGGATAGACGTATCCGGGTTTGGGCCAAACCGACCGGTGAGAAACGTCACACGTTAGTT 879 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 780 GCAGATAGACGTATCCGGGTGTGGGCCAAACCGACCGGTGAGAAACGTCACACGTTAGTC 839 Query 880 GCGACTTTAGAGAAGCACAAATCGGCGGTTAACGCATTAGCATTAAACGACGACGGATCG 939 |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 840 GCGACTTTGGAAAAGCATAAATCGGCGGTTAACGCATTGGCATTAAACGACGACGGATCG 899 Query 940 GTTTTGTTCTCCGGTTCGTGTGACCGGTCTATTTTGGTTTGGGAGAGAGAGGATACTTCC 999 ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 900 GTTTTATTCTCCGGTTCGTGTGACCGGTCTATTTTGGTTTGGGAGAGAGAAGACACTTCC 959 Query 1000 AATTACATGGCGGTGAGAGGTGCGTTGAGGGGACATGATAAAGCAATACTTAGCTTGTTC 1059 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 960 AATTACATGGCGGTGAGAGGTGCTTTGAGGGGACATGATAAAGCAATACTTAGCTTGTTC 1019 Query 1060 AACGTCTCTGATTTGCTACTCAGTGGATCAGCTGATCGGACGGTCAGGATTTGGCGACGT 1119 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1020 AACGTCTCTGATTTGCTACTAAGTGGATCAGCTGATCGGACGGTCAGAATTTGGCGACGT 1079 Query 1120 GGACCCGATTCTAGTTATAGTTGTTTGGAGGTTCTTTCCGGTCATACCAAGCCGGTTAAG 1179 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1080 GGACCGGATTCTAGTTATAGTTGTTTGGAGGTTCTTTCCGGTCATACGAAGCCGGTTAAG 1139 Query 1180 TCGTTGGCGGCGGTTAGAGAAAAGGAGTTAGACGATGTCGTTTCGATCATTAGTGGAAGT 1239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1140 TCGTTGGCGGCGGTTAGAGAAAAGGAGTTAGACGATGTCGTTTCGATCGTTAGTGGAAGT 1199 Query 1240 CTTGACGGAGAGGTTAAATGTTGGAAGGTGTCCGTCACCAAACCGGATAATTCATTTTAC 1299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CTTGACGGAGAGGTTAAATGTTGGAAGGTGTCCGTCACCAAACCGGATAATTCATTTTAC 1259 Query 1300 ACGAATCTCGTTCAATAAATTAGTGGCATTAATTTGTT 1337 |||||||||||||||||||||| ||| ||||||||||| Sbjct 1260 ACGAATCTCGTTCAATAAATTAATGGGATTAATTTGTT 1297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55345125985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5