BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G25440.1 Length=1653 Score E Sequences producing significant alignments: (Bits) Value Ahg472829 jgi|Araly1|472829|fgenesh2_kg.1__2783__AT1G25440.1 2303 0.0 > Ahg472829 jgi|Araly1|472829|fgenesh2_kg.1__2783__AT1G25440.1 Length=1578 Score = 2303 bits (1247), Expect = 0.0 Identities = 1487/1598 (93%), Gaps = 35/1598 (2%) Strand=Plus/Plus Query 64 ACACTAAATCTAACTTTTTGCAGAGAGCAAAAGATTCAATAATTGAGATTGATCTCAAAA 123 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 6 ACACTAAATCTAACTTTTTGCAGAGAGCAAAAGATTCAATTATTGAGATTGATCTCAAAA 65 Query 124 CCAAAGCTCTCGTGCTCTTGTCGTTGATGTTGGTTGTGTAGACTTTGTATACAATGATGA 183 |||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||| Sbjct 66 TCAAAGCTCTCGTGCTCTTGTCGTTGATGTTGGTTTTTTAGAGTTTGTATACAAAGATGA 125 Query 184 AAAGTTTGGCGAATGCTGTTGGAGCGAAGACGGCGAGGGCTTGCGACAGCTGCGTGAAGA 243 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 126 AAAGTTTGGCGAATGCTGTTGGAGCGAAGACGGCGAGGGCTTGCGACAGCTGCGTCAAGA 185 Query 244 GACGTGCACGGTGGTACTGCGCGGCCGACGATGCTTTTCTTTGCCAGTCTTGCGACAGTT 303 ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 186 GACGTGCGCGGTGGTACTGCGCGGCCGACGATGCTTTTCTTTGCCAATCTTGTGACAGTT 245 Query 304 TGGTCCATTCAGCAAACCCTCTTGCTCGCCGCCACGAGAGAGTCCGTTTGAAGACGGCTA 363 ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 246 TGGTCCACTCAGCGAACCCTCTTGCTCGCCGGCACGAGAGAGTCCGTTTGAAGACGGCCA 305 Query 364 GCCCGGCGGTCGTAAAGCATAGCAACCACTCATCAGCTTCTCCTCCACATGAGGTCGCCA 423 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 306 GCCCGGCGGTGGTAAAGCATAGCAACCACTCATCAGCTTCTCCTCCACATGAGGCCGCCA 365 Query 424 CGTGGCATCACGGGTTTACTCGTAAAGCTCGAACGCCACGTGGCTCTGGTAAGAAAAACA 483 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 366 CGTGGCATCACGGGTTCACTCGTAAAGCTCGGACGCCACGTGGCTCTGGTAAGAAGAACA 425 Query 484 ATTCGTCGATATTTCATGACTTGGTTCCTGATATTAGTATTGAGGATCAGACAGACAACT 543 |||||||||| |||||||||||||| || || |||||| ||||||||||||| |||| || Sbjct 426 ATTCGTCGATTTTTCATGACTTGGTGCCGGAGATTAGTGTTGAGGATCAGACTGACAGCT 485 Query 544 ATGAGCTTGAAGAGCAGCTGATCTGTCAAGTGCCGGTTCTAGATCCGTTGGTGTCTGAGC 603 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| Sbjct 486 ATGAGCTTGAAGAGCAGCTGATCTGTCAAGTGCCGGTTCTAGACCCGCTGGTGGCTGAGC 545 Query 604 AGTTCTTGAACGATGTCGTTGAGCCCAAGATCGAGTTTCCTATGATCAGAAGTGGTTTGA 663 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct 546 AGTTCTTGAACGATGTCGTTGAGCCCAAGATCGAGTTTCCGATGATGAGAAGTGGTATGA 605 Query 664 TGATCGAGGAGGAGGAAGACAACGCTGAAAGTTGTCTTAATGGATTTTTCCCGACCGACA 723 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 606 TGATCGAGGAGGAGGAAGACAACGCTGAAAGTTGTCTTAATGGTTTTTTCCCAACCGACA 665 Query 724 TGGAGCTTGAGGAGTTTGCTGCTGACGTGGAGACTCTGCTCGGTCGCGGGTTAGACACGG 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 666 TGGAGCTTGAGGAGTTTGCTGCTGACGTGGAGACTCTGCTCGGTCGCGGGTTAGACTCTG 725 Query 784 AGTCGTATGCCATGGAGGAGCTAGGGTTATCTAATTCAGAGATGTTCAAAATCGAAAAAG 843 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 AGTCCTATCCCATGGAGGAGCTAGGGTTATCTAATTCAGAGATGTTCAAAATCGAAAAAG 785 Query 844 ATGAGATTGAAGAAGAAGTAGAAGAGATAAAAGCCATGAGCATGGATATATTTGATGATG 903 | ||||||||||||||||||||||| | ||||||||||| |||||| ||||| ||||||| Sbjct 786 ACGAGATTGAAGAAGAAGTAGAAGAAAGAAAAGCCATGAACATGGAAATATTCGATGATG 845 Query 904 ATCGAAAAGACGTGGATGGAACAGTACCGTTTGAGCTAAGCTTTGATTACGAGTCGTCAC 963 |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 846 ATCGAAAAGACGGGGATGGGACAGTACCGTTTGAGCTAAACTTTGATTACGAGTCGTCAC 905 Query 964 ACAAGACGTCCGAAGAAGAGGTAATGAAGAACGTTGAAAGTAGTGGTGAATGTGTTGTTA 1023 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 906 ACAAGACATCCGAAGAAGAGGTAATGAAGAATGTTGAAAGTAGTGGTGAATGTGTTGTTA 965 Query 1024 AGGTGAAAGAGGAAGAACATAAGAATGTTCTGATGCTAAGATTAAACTATGACTCGGTGA 1083 |||| |||||||||||||| |||||||||||| |||| ||||||||||| |||||||| | Sbjct 966 AGGTAAAAGAGGAAGAACAGAAGAATGTTCTGTTGCTGAGATTAAACTACGACTCGGTTA 1025 Query 1084 TATCCACTTGGGGAGGTCAAGGTCCACCGTGGAGTTCAGGAGAGCCACCGGAACGAGACA 1143 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1026 TATCCACTTGGGGCGGCCAAGGTCCACCGTGGAGTTCAGGAGAGCCACCGGAGCGAGACA 1085 Query 1144 TGGACATCAGCGGTTGGCCAGCCTTTTCCATGGTGGAGAATGGAGGAGAAAGTACTCATC 1203 ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| Sbjct 1086 TGGACATCAGCGGTTGGCCAGCCGTTTCCATGGGGGAGAATGGAGGAGAAAATACTCATA 1145 Query 1204 AGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGGTTTGGAGATGGAGGTAGAGAAG 1263 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1146 AGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGATTTGGAGATGGAGGTAGAGAAG 1205 Query 1264 CTAGAGTTTCGAGATACAGAGAGAAGAGGAGGACAAGGTTGTTTTCTAAGAAGATACGGT 1323 || | ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| Sbjct 1206 CTCGGGTTTCGAGATACAGAGAGAAGAGAAGGACGAGGTTGTTTTCTAAGAAGATAAGGT 1265 Query 1324 ACGAGGTACGTAAATTGAATGCAGAGAAAAGACCACGAATGAAAGGAAGATTCGTGAAGA 1383 |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1266 ACGAGGTACGTAAACTGAATGCGGAGAAAAGACCACGAATGAAAGGAAGATTCGTTAAGA 1325 Query 1384 GAGCCTCGCTCGCTGCT---G---CTGC---TTCACCATTAGGTGTTAATTACTGAATAG 1434 ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| Sbjct 1326 GAGCCTCGCTCGCTGCTTCCGGTGCTGCAAATTCACCATTAGGTGTTAATTACTGAATAG 1385 Query 1435 TTAATATCTATTCATGTTATATCTCACTTTACAAATTTCGGTGAATCTTTTTT-CTTCTG 1493 | |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| Sbjct 1386 TGAATATCTATTCATGTTATATCTCACTTTACAAATTTTGGTGAA-CTTTTTTTCTTCTG 1444 Query 1494 AAACAACAGAAGTTATTTTGGCACTTAATTGTGCTTTGAGGACTTGTATGTACATAGAAG 1553 ||||||||||||||||||||||||||||||||| | | | ||| |||||| | Sbjct 1445 AAACAACAGAAGTTATTTTGGCACTTAATTGTG-T---A----T-GTA----CATAGATG 1491 Query 1554 TAACCAATAATAATGTGACTTTTACTTGTATTGATAGCACTGATGTATATATCTGGTAAT 1613 ||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||| Sbjct 1492 TAACCAATAAT---GTGACTTTT-CTTGTATTGATAGTACTGATGTATATATTTGGTAAT 1547 Query 1614 AAGAATGTGCAAACTGCAAAGGCATTTTGATTGTTAAA 1651 ||||||||||||| | | |||||||||||||||| Sbjct 1548 AAGAATGTGCAAA--G----G-CATTTTGATTGTTAAA 1578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61972828615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5