BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G25450.1 Length=1784 Score E Sequences producing significant alignments: (Bits) Value Ahg472828 jgi|Araly1|472828|fgenesh2_kg.1__2782__AT1G25450.1 2540 0.0 Ahg926134 jgi|Araly1|926134|scaffold_201695.1 1179 0.0 > Ahg472828 jgi|Araly1|472828|fgenesh2_kg.1__2782__AT1G25450.1 Length=1705 Score = 2540 bits (1375), Expect = 0.0 Identities = 1516/1585 (96%), Gaps = 5/1585 (0%) Strand=Plus/Plus Query 13 CTCCCATCTGCCAACTTTCCTCTGTTTCTCCTTTATATCCCAAACCTATTCTTCC-TCCA 71 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1 CTCTCATCTGCCAACTTTCCTCTGTTTCTCCTTTATATCCCAAACCTATTC-TCCATCCA 59 Query 72 CACCTCATCATAGGCATAGCAAAACTCTTCCAAAATGTCTGATTTCTCGAGCTCCGTGAA 131 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AACCTCATCATAGGCATAGCAAAACTCTTCCAAAATGTCTGATTTCTCGAGCTCCGTGAA 119 Query 132 GCTTAAATATGTTAAACTCGGTTACCAATACCTTATCAACAACTTCCTTACTCTTCTTTT 191 |||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| | Sbjct 120 GCTTAAATATGTGAAACTCGGTTACCAATACCTTATCAACAACTTCCTTACTGTCCTTCT 179 Query 192 GATTCCAGTCATAGCAACCGTCGCCATCGAGCTTCTCCGAATGGGTCCGGAAGAGATTCT 251 ||||||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||||||| Sbjct 180 GATTCCAGTCATAGCGACCATCGTCATTGAGCTTCTCCGAATGGGTCCCGAAGAGATTCT 239 Query 252 CAGTGTCTTGAACTCACTCCACTTCGAGCTTCTTCATATCCTTTGTTCCTCTTTCCTTAT 311 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 CAGTGTCTTGAACTCACTCCACTTCGAGCTCCTTCATATCCTTTGTTCCTCTTTCCTTAT 299 Query 312 TATCTTTGTTTCAACCGTTTACTTCATGTCCAAGCCACGTACCGTCTACCTTGTGGACTA 371 || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 300 CATTTTTGTTTCAACCGTTTACTTCATGTCCAAGCCACGCACCGTCTACCTTGTAGACTA 359 Query 372 CTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCGTTCTCTTCGTTCATGGAACACTC 431 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 360 CTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCGTTCTCTTCCTTCATGGAACACTC 419 Query 432 TCGTCTCATCCTCAAAGACAATCCCAAGAGTGTCGAATTCCAAATGAGAATCCTCGAGCG 491 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 TCGTCTCATCCTCAAAGACAATCCCAAGAGCGTCGAATTCCAAATGAGAATCCTCGAGCG 479 Query 492 ATCAGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGCTATTCATTACATCCCTCCAACTCC 551 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATCTGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGCTATTCATTACATCCCTCCAACTCC 539 Query 552 AACCATGGAATCCGCAAGAAACGAGGCCCAAATGGTTATCTTCACCGCCATGGAAGATCT 611 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 GACCATGGAATCCGCAAGAAACGAGGCCCAAATGGTTATCTTCACAGCCATGGAAGATCT 599 Query 612 CTTCAAGAATACAGGTCTTAAACCTAAAGACATCGACATCCTCATTGTTAATTGCTCTCT 671 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 CTTCAAGAATACAGGTCTTAAACCTAAAGACATTGACATCCTCATTGTTAATTGCTCTCT 659 Query 672 GTTCTCACCAACGCCGTCTCTCTCCGCTATGATTATCAACAAGTACAAGCTTAGGAGTAA 731 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTTTTCACCAACGCCTTCTCTCTCCGCTATGATTATCAACAAGTACAAGCTTAGGAGTAA 719 Query 732 CATCAAAAGCTATAACCTTTCCGGGATGGGATGCAGCGCTAGTCTTATCTCAGTTGATGT 791 ||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || ||||| Sbjct 720 CATCAAAAGTTATAACCTTTCTGGGATGGGATGTAGCGCCAGTCTTATCTCCGTCGATGT 779 Query 792 AGCACGTGATTTGTTACAAGTCCATCCTAACTCCAACGCAATCATAATTAGCACTGAGAT 851 || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 780 AGTACGTGACTTGTTACAAGTCCATCCTAACTCCAACGCAGTCATAATTAGCACTGAGAT 839 Query 852 CATTACTCCTAATTACTATAAGGGTAATGAGAGAGCCATGTTGCTCCCAAACTGCCTCTT 911 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 840 CATTACTCCTAATTACTATAAAGGTATTGAGAGAGCCATGTTGCTCCCAAACTGTCTCTT 899 Query 912 CCGTATGGGAGGCGCCGCCATTCTCCTCTCTAACCGCAGATCCGACAGGTGGCGAGCTAA 971 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 900 CCGCATGGGAGGCGCCGCCATTCTCCTCTCGAACCGCAGATCCGACAGGTGGCGAGCTAA 959 Query 972 GTACAAGTTATGCCACCTTGTTAGGACCCATCGCGGTGCGGATGACAAATCCTACAACTG 1031 ||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct 960 GTACAAGCTATGCCACCTTGTTAGGACCCACCGCGGTGCGGATGACAAGTCTTACAACTG 1019 Query 1032 TGTTATGGAACAGGAAGACAAAAATGGTAACGTGGGAATCAACTTGTCTAAAGATCTCAT 1091 ||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 1020 TGTTATGGAGCAGGAAGACAAAAACGGTAATGTGGGGATCAACTTGTCTAAAGATCTCAT 1079 Query 1092 GACCATTGCCGGAGAAGCCTTGAAAG-CTAATATCACTACCATAGGTCCTTTGGTCCTTC 1150 |||||| ||||||||||| ||| ||| |||| ||||||||||||||||||||||| |||| Sbjct 1080 GACCATCGCCGGAGAAGCATTG-AAGTCTAACATCACTACCATAGGTCCTTTGGTTCTTC 1138 Query 1151 CGGCATCGGAGCAGCTTCTCTTCCTCTCATCCCTTATCGGACGTAAAATCTTCAATCCAA 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 CGGCATCGGAGCAGCTTCTCTTCCTCTCATCCCTTATCGGACGTAAAATCTTCAATCCAA 1198 Query 1211 AGTGGAAGCCGTACATACCAGATTTCAAGCAGGCCTTCGAGCATTTCTGCATCCACGCAG 1270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 AGTGGAAGCCGTACATACCAGATTTCAAGCAGGCCTTCGAGCATTTCTGCATCCACGCAG 1258 Query 1271 GAGGAAGAGCGGTGATTGATGAGCTGCAAAAGAATCTACAGCTGTCGGGAGAACACGTGG 1330 ||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||| Sbjct 1259 GAGGAAGGGCGGTGATTGACGAGCTGCAAAAGAATTTGCAGCTGTCGGGAGAACACGTGG 1318 Query 1331 AAGCTTCAAGAATGACACTACATAGGTTTGGTAATACATCGTCGTCATCATTATGGTATG 1390 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1319 AAGCTTCAAGAATGACACTACATAGGTTTGGTAATACCTCGTCGTCATCATTGTGGTATG 1378 Query 1391 AGCTTAGCTACATAGAGGCTCAAGGGAGAATGAAGAGAAACGATAGGGTTTGGCAGATCG 1450 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1379 AGCTTAGCTACATAGAGGCTCAAGGGAGAATGAAGAGAAGTGATAGGGTTTGGCAGATCG 1438 Query 1451 CTTTCGGAAGTGGATTCAAGTGTAACTCCGCCGTTTGGAAATGTAACCGTACGATCAAGA 1510 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 CGTTCGGGAGTGGATTCAAGTGTAACTCCGCCGTTTGGAAATGTAACCGTACGATCAAGA 1498 Query 1511 CACCAACGGATGGAGCGTGGTCGGATTGTATCGAACGATACCCTGTCTTTATCCCTGAAG 1570 |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 1499 CACCAACGGATGGAGCATGGTCGGATTGTATCCAACGATATCCTGTCTTTATCCCTGAAG 1558 Query 1571 TTGTTAAACTATGAAAATA-Ctttt 1594 |||| |||||||||||||| ||||| Sbjct 1559 TTGTCAAACTATGAAAATAACTTTT 1583 > Ahg926134 jgi|Araly1|926134|scaffold_201695.1 Length=1797 Score = 1179 bits (638), Expect = 0.0 Identities = 1208/1484 (81%), Gaps = 36/1484 (2%) Strand=Plus/Plus Query 115 TTCTCGAGCTCCGTGAAGCTTAAATATGTTAAACTCGGTTACCAATACCTT-ATCAA-CA 172 ||||| ||||| |||||||| || || || ||||| ||||||||||| || | || | Sbjct 93 TTCTCTAGCTCGGTGAAGCTCAAGTACGTGAAACTTGGTTACCAATA-TTTGGTTAATC- 150 Query 173 ACTTCCTT-ACTCTTCTTTTGATTCCAG-TCATAGCAACCGTCGCCATCGAGCTTCTCCG 230 | || ||| | | ||||||||| ||| | |||| || | ||||||| | |||||||| || Sbjct 151 A-TTTCTTGAGTTTTCTTTTGA-TCCCGATCATGGCTATCGTCGCCGTTGAGCTTCTTCG 208 Query 231 AATGGGTCC-GGAAGAGATTCTCAGTGTCTT-GAACTCACTCCACTTCGAGCTTCTTCAT 288 |||||||| || |||||| || | ||| || ||||||||| || || || || |||| Sbjct 209 GATGGGTCCTGG-AGAGATCCTTAATGT-TTGGAACTCACTTCAGTTTGACCTAGTTCAG 266 Query 289 ATCCTTTGTTCCTCTTTCCTTATTATCTTTGTTTCAACCGTTTACTTCATGTCCAAGCCA 348 | || ||||| || ||| || | ||||| | || |||||||||||||||||||||||| Sbjct 267 GTTCTATGTTCTTCCTTCTTTGTCATCTTCATCTCCACCGTTTACTTCATGTCCAAGCCA 326 Query 349 CGTACCGTCTACCTTGTGGACTACTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCG 408 |||||| ||||||| || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 327 CGTACCATCTACCTCGTTGACTATTCTTGTTACAAGCCACCTGTCACGTGTCGTGTCCCC 386 Query 409 TTCTCTTCGTTCATGGAACACTCTCGTCTCATCCTCAAAGACAATCCC-AAGAGTGTCGA 467 ||| | | |||||||||||||||||| | | |||||| ||||| ||| ||||| || || Sbjct 387 TTCGCAACTTTCATGGAACACTCTCGTTTGAACCTCAAGGACAA-CCCTAAGAGCGTTGA 445 Query 468 ATTCCAAATGAGAATCCTCGAGCGATCAGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGC 527 ||||||||||||||||| || || || || || || |||||||||||||||||||| || Sbjct 446 GTTCCAAATGAGAATCCTTGAACGTTCTGGCCTCGGTGAAGAGACTTGTCTCCCTCCGGC 505 Query 528 TATTCATTACATCCCTCCAACTCCAACCATGGAATCCGCAAGAAACGAGGCCCAAATGGT 587 ||||||||| || ||||| || ||||||||||| | || |||| ||||| || ||||| Sbjct 506 TATTCATTATATTCCTCCGACACCAACCATGGACGCGGCTAGAAGTGAGGCTCAGATGGT 565 Query 588 TATCTTCACCGCCATGGAAGATCTCTTCAAGAATACAGGTCTTAAACCTAAAGACATCGA 647 ||||||||| |||||||| ||||| |||||||| || |||||||||||||||||| |||| Sbjct 566 TATCTTCACGGCCATGGACGATCTATTCAAGAAAACCGGTCTTAAACCTAAAGACGTCGA 625 Query 648 CATCCTCATTGTTAATTGCTCTCTGTTCTCACCAACGCCGTCTCTCTCCGCTATGATTAT 707 |||||| || || ||||||||||| ||||| || || || || ||||| |||||| | || Sbjct 626 CATCCTTATCGTCAATTGCTCTCTTTTCTCTCCCACACCATCACTCTCAGCTATGGTCAT 685 Query 708 CAACAAGTACAAGCTTAGGAGTAACATCAAAAGCTAT-AACCTTTCCGGGATGGGATGCA 766 |||||| || |||||||||||||| |||||||||| | || || || |||||||| |||| Sbjct 686 CAACAAATATAAGCTTAGGAGTAATATCAAAAGCT-TCAATCTCTCGGGGATGGGCTGCA 744 Query 767 GCGCTAGTCTTATCTCAGTTGATGTAGCACGTGATTTGTTACAAGTCCATCCTAACTCCA 826 |||| | || |||||||||||| |||| || || ||| | ||||| ||||| || || | Sbjct 745 GCGCGGGCCTCATCTCAGTTGATCTAGCCCGCGACTTGCTCCAAGTTCATCCCAATTCAA 804 Query 827 ACGCAATCATAATTAGCACTGAGATCATTACTCCTAATTACTAT-AAGGGTAATGAGAGA 885 | |||||||| | ||||| |||||||| || |||||||||||| |||| || |||||| Sbjct 805 ATGCAATCATCGTCAGCACGGAGATCATAACGCCTAATTACTATCAAGGA-AACGAGAGA 863 Query 886 GCCATGTTGCT-CCCAAACTGCCTCTTCCGTATGGGAGGCGCC-GCCATTCTCCTCTCTA 943 ||||||||| | ||||| ||||||||||| ||||| | || | ||||| | | | || | Sbjct 864 GCCATGTTGTTACCCAAT-TGCCTCTTCCGCATGGGCG-CGGCAGCCATACACATGTCAA 921 Query 944 ACCGCAGATCCGACAGGTGGCGAGCTAAGTACAAG-TTATGCCACCTTGTTAGGACCCAT 1002 ||||| | || ||| |||||||||| || |||||| || | ||| || || ||||||| Sbjct 922 ACCGCCGCTCTGACCGGTGGCGAGCCAAATACAAGCTT-TCCCATCTGGTCCGGACCCAC 980 Query 1003 CGCGGTGCGGATGACAAATCCTACAACTGTGT-TATGGAACAGGAAGACAAA-AATGGTA 1060 |||||||| || ||||| || | | ||||||| || | |||||||||||||| || || | Sbjct 981 CGCGGTGCTGACGACAAGTCTTTCTACTGTGTCTACG-AACAGGAAGACAAAGAA-GG-A 1037 Query 1061 -ACGTGGGAATCAACTTGTCTAAAGATCTCATGACCATTGCCGGAGAAGCCTTGAAAGCT 1119 |||| || ||||||||||| |||||||||||| | || ||||| |||||| | || || Sbjct 1038 CACGTTGGCATCAACTTGTCCAAAGATCTCATGGCTATCGCCGGTGAAGCCCTCAAGGCA 1097 Query 1120 AATATCACTACCATAGGTCCTTTGGTCCTTCCGGCATCGGAGCAGCTTCTCTTCCTCTCA 1179 || ||||| || |||||||||||||| || ||||| || || || |||||||||||| | Sbjct 1098 AACATCACCACAATAGGTCCTTTGGTACTACCGGCGTCAGAACAACTTCTCTTCCTCACG 1157 Query 1180 TCCCTTATCGGACGTAAAATCTTCAATCCAAAGTGGAAGCCGTACATACCAGATTTCAAG 1239 ||||| ||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| Sbjct 1158 TCCCTAATCGGGCGTAAAATCTTCAACCCAAAATGGAAACCATACATACCGGATTTCAAA 1217 Query 1240 CAGGCCTTCGAGCATTTCTGCATCCACGCAGGAGGAAGAGCGGTGATTGATGAGCTGCAA 1299 | ||||||||| || |||||||| ||||||||||| |||||||| || || ||||| || Sbjct 1218 CTGGCCTTCGAACACTTCTGCATTCACGCAGGAGGCAGAGCGGTTATCGACGAGCTCCAG 1277 Query 1300 AAGAATCTACAGCTGTCGGGAGAACACGTGGAAGCTTCAAGAATGACACTACATAGGTTT 1359 ||||| |||||||| || ||||||||||| || || || ||||||||||||||| | ||| Sbjct 1278 AAGAACCTACAGCTATCAGGAGAACACGTTGAGGCCTCGAGAATGACACTACATCGTTTT 1337 Query 1360 GGTAATACATCGTCGTCATCATTATGGTATGAGCTTAGCTACATAGAGGCTCAAGGGAGA 1419 ||||| || || |||||||| || ||||| |||||||||||||| ||| || |||||| | Sbjct 1338 GGTAACACGTCATCGTCATCGTTGTGGTACGAGCTTAGCTACATCGAGTCTAAAGGGAAA 1397 Query 1420 ATGAAGAGAAACGATAGGGTTTGGCAGATCGC-TTTCGGAAGTGGATTCAAGTGTAACTC 1478 |||| |||| |||| | ||||||||||| || ||| ||||| || || ||||||||||| Sbjct 1398 ATGAGGAGAGGCGATCGTGTTTGGCAGATTGCGTTT-GGAAGCGGTTTTAAGTGTAACTC 1456 Query 1479 CGCCGTTTGGAAATGTAACCGTACGATCAAGACACC-AACGGATGGAGCGTGGTCGGATT 1537 ||||| |||| |||||||||||||| |||||||| || ||| ||| | ||||| |||| Sbjct 1457 AGCCGTGTGGATGTGTAACCGTACGATTAAGACACCTAA-GGACGGACCATGGTCCGATT 1515 Query 1538 GTATCGAACGATACCCTGTCTTTAT-CCCTGAAGTTGTTAAACT 1580 ||||||| || |||||||||||||| ||| |||||||| ||||| Sbjct 1516 GTATCGACCGTTACCCTGTCTTTATTCCC-GAAGTTGTCAAACT 1558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66962650710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5