BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G25520.1 Length=1184 Score E Sequences producing significant alignments: (Bits) Value Ahg335795 jgi|Araly1|335795|fgenesh1_pg.C_scaffold_1002360 1153 0.0 > Ahg335795 jgi|Araly1|335795|fgenesh1_pg.C_scaffold_1002360 Length=693 Score = 1153 bits (624), Expect = 0.0 Identities = 666/687 (97%), Gaps = 0/687 (0%) Strand=Plus/Plus Query 200 ATGAGCTCGGTTTTGCAGGGTTTTACGAAGTCACTTGCTATGACCTTTGTATCGGAGATT 259 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1 ATGAGCTCGGTTTTACAGGGTTTTACGAAGTCACTCGCTATGACGTTTGTATCGGAGATT 60 Query 260 GGTGACAAGACGTTTTTCGCTGCAGCAATTTTGGCTATGCGTTATCCTAGGAGACTTGTG 319 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GGTGACAAGACGTTTTTCGCTGCAGCTATTTTGGCTATGCGTTATCCTAGGAGACTTGTG 120 Query 320 TTGGCTGGTTGTTTATCGGCTCTGATTGTTATGACTATCCTCTCTGCTACTCTTGGATGG 379 |||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 121 TTGGCTGGTTGTCTATCTGCCCTGATTGTCATGACTATCCTCTCTGCTACTCTTGGATGG 180 Query 380 GCTGCTCCTAATCTGATCTCTCGCAAATGGACTCATCACATAACAACATTGTTGTTCTTT 439 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCTGCTCCAAATCTGATCTCTCGCAAATGGACTCATCACATAACAACATTGTTGTTCTTC 240 Query 440 GGTTTTGGGCTATGGTCTTTGTGGGACGGTTTCAAAGAAGGAGGAGGGGGTTCGGAAGAA 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGTTTTGGGCTATGGTCTTTGTGGGACGGTTTCAAAGAAGGAGGAGGGGGTTCGGAAGAA 300 Query 500 TTGGCTGAAGTCGAAGCAGAACTGGATGCTGATTTGAAGGCTAATGGTAAATCTCCAAAA 559 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTGGCTGGAGTCGAAGCAGAACTGGATGCTGATTTGAAGGCTAATGGTAAATCTCCAAAA 360 Query 560 GACAGTAGTAAGAGAGAAGATGAAAACAAAAAGCAGAATAGGGCGTTCCTCACGCAATTT 619 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 GACAGTAGTAAGATTGAAGATGAAAACAAAAAGCAGAAAAGGGCGTTCCTCACGCAATTC 420 Query 620 TTCTCTCCAATTTTTCTCAAGGCTTTTTCGATTAATTTCTTTGGAGAATGGGGTGACAAG 679 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 TTCTCTCCAATTTTTCTTAAGGCATTTTCGATTAATTTCTTTGGAGAATGGGGTGACAAG 480 Query 680 AGTCAGCTTGCTACAATTGGTTTAGCTGCAGATGAAAATCCATTTGGGGTGGTCCTTGGT 739 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 481 AGTCAGCTTGCTACAATTGGTTTGGCTGCAGATGAAAATCCATTTGGGGTGGTCCTTGGT 540 Query 740 GGAGTTGTGGCACAGTTTTTGTGCACCACTGCTGCTGTAATTGGAGGAAAGAGCTTAGCG 799 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGAGTTGTGGCACAGTTTTTGTGCACCACTGCTGCTGTAATTGGAGGAAAGAGCTTAGCA 600 Query 800 TCTCAAATTTCCGAAAGAATAGTGGCTCTTTCTGGTGGAATGCTTTTCATCATTTTTGGC 859 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 TCTCAAATATCCGAAAGAATAGTTGCTCTTTCTGGTGGAATGCTTTTCATCATTTTTGGC 660 Query 860 ATCCAATCGTATCTTACTTCTGTTGAG 886 ||||||||||||||||||||||||||| Sbjct 661 ATCCAATCGTATCTTACTTCTGTTGAG 687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44184460803 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5