BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G25550.1 Length=1396 Score E Sequences producing significant alignments: (Bits) Value Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706 1107 0.0 Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929 300 2e-80 Ahg950188 jgi|Araly1|950188|scaffold_802075.1 263 3e-69 Ahg947333 jgi|Araly1|947333|scaffold_703562.1 217 2e-55 Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1 52.8 7e-06 > Ahg912452 jgi|Araly1|912452|Al_scaffold_0001_2706 Length=1023 Score = 1107 bits (599), Expect = 0.0 Identities = 921/1064 (87%), Gaps = 72/1064 (7%) Strand=Plus/Plus Query 211 ATGATGATGTTCAAGAGCGGTGACAT---GGATTACACCCAGAAAATGAAGAGATGTCAC 267 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 1 ATGATGATGTTCAAGAGCGGTGACATGGAGGATCACACCCAGAAAATGAAGAGATGTCAC 60 Query 268 GAATATGTAGAAGCTCTAGAAGAAGAACaaaaaaaGATTCAAGTCTTTCAACGTGAGCTC 327 ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 GAATACGTAGAAGCTCTCGAAGAAGAACAAAAAAAGATTCAAGTCTTCCAACGTGAGCTC 120 Query 328 CCTTTATGTTTAGAACTTGTAACCCAAGCTATCGAGTCATGTCGGAAGGAGTTATCGGAA 387 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | Sbjct 121 CCTTTATGTTTAGAACTTGTAACCCAAGCTATTGAGTCATGTCGGAAGGAGCTATCGGGA 180 Query 388 TCTTCAGAACATGTTGGCGGCCAGTCAGAATGTTCTGAGCGGACAACTAGTGAAT---GC 444 || || ||||||||||||||||| ||||| ||||||||| |||| |||||||| | || Sbjct 181 TCGTCGGAACATGTTGGCGGCCAATCAGAGTGTTCTGAGAGGACGACTAGTGAGTGCGGC 240 Query 445 GGCGGT-GC-----CGTGTTTGAAGAGTTTATGCCAATCAAGTGGAGTTCTGCTTCATCT 498 |||||| || |||||||||||||||||| || || |||||||||||| ||||||| Sbjct 241 GGCGGTGGCGGTGTCGTGTTTGAAGAGTTTATCCCGATTAAGTGGAGTTCTTCTTCATCC 300 Query 499 GATGAAACCGATAAAGATGAAGAAGCTGAGAAAACTGAGATGATGACCAATGAAAATAAC 558 |||||||||||||||||||||| | || | || | | |||||| Sbjct 301 GATGAAACCGATAAAGATGAAG-A----AG----C--------TG----A-G--AATAAC 336 Query 559 GATGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAATTGTGGAACCAATCACCA 618 | ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| Sbjct 337 GGTGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTATGGAACCAATCGCCA 396 Query 619 GATCCACAACCT----A--AT-A----A-T-A-AGAAA-CCGATGGTAATTGAAGTCAAA 663 |||||| ||||| | || | | | | | ||| ||| ||||| || |||||| Sbjct 397 GATCCAAAACCTAAAGAGGATCATGTGACTAATAAAAAGACGAACGTAATCGAGGTCAAA 456 Query 664 CGCAGCGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAGGCTGCAGATTCTCAA 723 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 457 CGCAACGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAAGCTGCAGATTCTCAA 516 Query 724 CCACTTATTAAAGCAATTACTCCGACGTCGACGACGACAACTAGTTCCACGGCGGAAACC 783 || |||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 517 CCGCTTA--AAA-CAATCACTCCGACGTCGACGACGACATCTAGTTCCACGGCGGAAACA 573 Query 784 GTCGGGGGTGGAAAA--GAGTTTGAGGAGCAGAAACAATCTCATTCGAATAGGAAGCAAA 841 ||||| ||| |||| ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 574 GTCGGAGGT--AAAAGTGAGTTTGAGGATCAGAAACAATATCATTCGAATAGGAAGCAAA 631 Query 842 GACGTTGCTGGTCACCGGAGTTACACCGCAGATTCTTGCACGCGCTTCAACAACTTGGTG 901 ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 632 GACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCACGCGCTTCAACAACTTGGTG 691 Query 902 GATCACATGTTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTA 961 |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct 692 GATCACATGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTCGATGGTTTAACTA 751 Query 962 ATGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTC 1021 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 752 ATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGACCAGCTACTC 811 Query 1022 CGGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCA 1081 ||||| ||| | || |||||||||| ||||||||||||| || |||||| | ||||| | Sbjct 812 CGGTAATAACAAACGCTGGTGAAAATACACAACAACGGCAATTCATGGTGGTCGAAGGAA 871 Query 1082 TTTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTGTGGCGACACAAC 1141 ||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct 872 TTTGGGTGCCGTCGCACGATACAACGAATAATAGAGTTTACGCTCCTGTGGCG------- 924 Query 1142 CGCCGCAATCTTCAACGTCGGGAGAGAGAAGCAATCGGGGTTGCAAATCTCCCG-CAACA 1200 | ||||||||| |||||||||||||||| | ||| |||||||||| || | ||||| Sbjct 925 -GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGCCGGCGTTGCAAATCGCC-GACAACA 981 Query 1201 TCTTCTACTACTacacacacaccacacCTTCTTCCTCTTTCATA 1244 |||||| | |||||||||||||||||| ||||||||||||||| Sbjct 982 TCTTCT--T-CTACACACACACCACACCGTCTTCCTCTTTCATA 1022 > Ahg343166 jgi|Araly1|343166|fgenesh1_pg.C_scaffold_3002929 Length=477 Score = 300 bits (162), Expect = 2e-80 Identities = 275/325 (85%), Gaps = 26/325 (8%) Strand=Plus/Plus Query 909 TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA 962 ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||| Sbjct 132 TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA 191 Query 963 TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC 1022 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 192 TGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGACCAGCTACTCC 251 Query 1023 GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT 1082 |||||||| | |||||| |||||||||||||||| || || |||||| ||||||| || Sbjct 252 GGTAGTAACAAACGGTGGAGAAAATCCACAACAACTACAATTCATGGTGGTGGAAGGAAT 311 Query 1083 TTGGGTACCT-TCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGCGACACAA 1140 |||||| | | || ||||||||||| ||||||||||||||||||| || ||||| Sbjct 312 TTGGGTGC-TGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGCG------ 363 Query 1141 CCGCCGCAATCTTCAACGTCGGGAGAGAGAAGCA-ATCGGGGTTGCAAATCTCCCG-CAA 1198 | ||||||||| |||||||||||||||| | | ||| | |||||||| || | ||| Sbjct 364 --GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGA-CGGCGCTGCAAATCGCC-GACAA 418 Query 1199 CATCTTCTACTACTacacacacacc 1223 |||||||||| || |||| |||||| Sbjct 419 CATCTTCTAC-AC-ACAC-CACACC 440 > Ahg950188 jgi|Araly1|950188|scaffold_802075.1 Length=523 Score = 263 bits (142), Expect = 3e-69 Identities = 313/387 (81%), Gaps = 46/387 (12%) Strand=Plus/Plus Query 909 TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA 962 ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||| Sbjct 164 TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA 223 Query 963 TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC 1022 ||||||||||||||| ||||||| || |||||| |||||||||||||||||||| Sbjct 224 TGACGAAGTTAAAAGCCATTTAC------AT--ATTGCACACAAGAAGACCAGCTACTCC 275 Query 1023 GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT 1082 |||||||| | |||||| |||| ||||||||||| || || |||||| ||||||| || Sbjct 276 GGTAGTAACAAACGGTGGAGAAA-TCCACAACAACTACAATTCATGGTGGTGGAAGGAAT 334 Query 1083 TTGGGTACCT-TCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGCGACACAA 1140 |||||| | | || ||||||||||| ||||||||||||||||||| || ||||| Sbjct 335 TTGGGTGC-TGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGCG------ 386 Query 1141 CCGCCGCAATCTTCAACGTCGGGAGAGAGAAGCA-ATCGGGGTTGCAAATCTCCCG-CAA 1198 | ||||||||| |||||||||||||||| | | ||| | |||||||| || | ||| Sbjct 387 --GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGA-CGGCGCTGCAAATCGCC-GACAA 441 Query 1199 CATCTTCTACTACTacacacacaccacacCTTCTTCCTCTTTCATAAATATATAGTT-AC 1257 |||||||||| || |||| |||||| | |||||||| ||||| ||| ||| || Sbjct 442 CATCTTCTAC-AC-ACAC-CACACCG----T-CTTCCTCTATCATAGATA----GTTCAC 489 Query 1258 CGATTTGTATGAAAATTTGTTTTCTTC 1284 |||||||||||||||| ||||||||| Sbjct 490 -GATTTGTATGAAAATTGGTTTTCTTC 515 > Ahg947333 jgi|Araly1|947333|scaffold_703562.1 Length=383 Score = 217 bits (117), Expect = 2e-55 Identities = 197/232 (85%), Gaps = 19/232 (8%) Strand=Plus/Plus Query 909 TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA 962 ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||| Sbjct 164 TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA 223 Query 963 TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC 1022 ||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct 224 TGACGAAGTTAAAAGCCATTTAC--------AGATTGCACACAAGAAGACCAGCTACTCC 275 Query 1023 GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT 1082 |||||||| | ||||||||||||| ||||||||||||| || |||||| ||||||| || Sbjct 276 GGTAGTAACAAACGGTGGTGAAAATACACAACAACGGCAATTCATGGTGGTGGAAGGAAT 335 Query 1083 TTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGC 1133 | | | || || ||||||||||| ||||||||||||||||||| || |||| Sbjct 336 T-GTG--CCGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGC 383 > Ahg475994 jgi|Araly1|475994|fgenesh2_kg.2__1124__AT1G68670.1 Length=1432 Score = 52.8 bits (28), Expect = 7e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 17 TTTAGGTACGCGACGGCCCGACCTCGAT 44 |||||||||||||||||||||||||||| Sbjct 1 TTTAGGTACGCGACGGCCCGACCTCGAT 28 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52183635650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5