BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G25560.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921660 jgi|Araly1|921660|scaffold_102941.1 1676 0.0
Ahg476011 jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1 573 1e-162
Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1 285 6e-76
Ahg920198 jgi|Araly1|920198|scaffold_101479.1 279 3e-74
> Ahg921660 jgi|Araly1|921660|scaffold_102941.1
Length=1120
Score = 1676 bits (907), Expect = 0.0
Identities = 1058/1129 (94%), Gaps = 18/1129 (2%)
Strand=Plus/Plus
Query 43 TCTCTCTCACAAACAC-AACAAATATGGAATACAGCTGTGTAGACGACAGTAGTACAACG 101
||||||||| |||| | |||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 3 TCTCTCTCAGAAACTCAAACAAAAATGGATTACAGCTGTGTAGATGACAGTAGTACAACG 62
Query 102 TCAGAATCTCTCTCCATCTCTACTACTCCAAAGCCGACAACGACGACGGAGAAGAAACTC 161
|||||||||||||||| ||| ||||||| ||||||||||||||||| | | ||||||||
Sbjct 63 TCAGAATCTCTCTCCA--TCT-CTACTCCGAAGCCGACAACGACGAC-G-G-AGAAACTC 116
Query 162 TCTTCTCCGCCGGCGACGTCGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGCAGCGTC 221
|||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 117 TCTTCTCCTCCGGC--C-ACGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGTAGCGTC 173
Query 222 GTTTTGGATTCAGAGAACGGCGTCGAGACCGAGTCACGTAAGCTTCCTTCGTCGAAATAT 281
|||||||||| ||| ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 174 GTTTTGGATTTAGATAACGGCGTCGAGACCGAGTCACGGAAGCTCCCGTCGTCGAAATAC 233
Query 282 AAAGGCGTTGTGCCTCAGCCTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAG 341
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AAAGGCGTTGTGCCTCAACCTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAG 293
Query 342 CGAGTTTGGCTCGGTACTTTCAACGAGGAAGAAGAAGCTGCGTCTTCTTACGACATCGCC 401
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 294 CGAGTTTGGCTCGGTACTTTCAACGAAGAAGAAGAAGCCGCGACTTCTTACGACATCGCC 353
Query 402 G-TGAGGAGATTCCGCGGCCGCGACGCCGTCACTAACTTCAAATCTCAAGTTGATGGAAA 460
| | ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 354 GCT-AGGAGATTCCGTGGCCGTGACGCCGTCACTAATTTCAAATCTCAAGTTGATGGAAA 412
Query 461 CGACGCCGAATCGGCTTTTCTTGACGCTCATTCTAAAGCTGAGATCGTGGATATGTTGAG 520
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 413 CGAAGCCGAAACGGCTTTTCTTGACGCTCATTCTAAAGCTGAGATCGTTGATATGTTGAG 472
Query 521 GAAACACACTTACGCCGATGAGTTTGAGCAGAGTAGACGGAAGTTTGTTAACGGCGACGG 580
||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||
Sbjct 473 GAAACACACTTACGCCGATGAGTTTGAGCAGAGCAAACGGAAATTTGTTAACGGTAACGG 532
Query 581 AAAACGCTCTGGGTTGGAGACGGCGACGTACGGAAACGACGCTGTTTTGAGAGCGCGTGA 640
|||||||| ||| | ||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 533 AAAACGCTGTGGATCGGAGACGGCGATGCACGGAAACGACGCAGTTTTGAGAGCGCGTGA 592
Query 641 GGTTTTGTTCGAGAAGACTGTTACGCCGAGCGACGTCGGGAAGCTGAACCGTTTAGTGAT 700
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 593 GGTTTTGTTCGAGAAGACTGTGACGCCGAGTGACGTCGGGAAGCTGAACCGTTTAGTGAT 652
Query 701 ACCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGATGACGACGGCGATGGGGAT 760
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 653 ACCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGACGACGACGGCGATGGGGAT 712
Query 761 GAATCCGTCTCCGACGAAAGGCGTTTTGATTAACTTGGAAGATAGAACAGGGAAAGTGTG 820
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 713 GAGTCCGTCTCCGACGAAAGGCGTTTTGATTAACTTGGAAGACAGAACAGGGAAAGTGTG 772
Query 821 GCGGTTCCGTTACAGTTACTGGAACAGCAGTCAAAGTTACGTGTTGACCAAGGGCTGGAG 880
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 773 GCGGTTCCGTTACAGTTACTGGAACAGCAGTCAGAGTTACGTGTTGACCAAGGGCTGGAG 832
Query 881 CCGGTTCGTTAAAGAGAAGAATCTTC-GAGCCGGTGATGTGGTTTGTTTCGAGAGATCAA 939
||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
Sbjct 833 CCGGTTCGTTAAAGAGAAGAATC-TCAGAGCCGGTGATGTGGTTTATTTCGAGAGATCGA 891
Query 940 CCGGACCAGACCGGCAATTGTATATCCACTGGAAAGTCCGGTCTAGTCCGGTTCAGACTG 999
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 892 CCGAACCAGACCGGCAATTGTATATCGACTGGAAAGTCCGGTCTAGTCCGGTTCAGACTG 951
Query 1000 TGGTTAGGCTATTCGGAGTCAACATTTTCAATGTGAGTAACGAGAAACCAAACGACGTCG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGGTTAGGCTATTCGGAGTCAACATTTTCAATGTGAGTAACGAGAAACCAAACGACGTCG 1011
Query 1060 CAGTAGAGTGTGTTGGCAAGAAGAGATCTCGGGAAGATGATTTGTTTTCGTTAGGGTGTT 1119
|||||||||| | |||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 1012 CAGTAGAGTGCGGTGGCAAGA-GA--TCTCGGGAAGTTGATTTGTTTTCGTTAGGGTGTT 1068
Query 1120 CCAAGAAGCAGGCGATTATCAACATCTTGTGACAAATTCtt-ttttttt 1167
|||||||||||||||||||||| ||||||||||| || || |||||||
Sbjct 1069 CCAAGAAGCAGGCGATTATCAATGTCTTGTGACAATTTTTTCTTTTTTT 1117
> Ahg476011 jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1
Length=1357
Score = 573 bits (310), Expect = 1e-162
Identities = 798/1020 (78%), Gaps = 88/1020 (9%)
Strand=Plus/Plus
Query 163 CTTCTCCGCCGGC-GACGTCGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGCAGCGTC 221
|||||| ||||| | || || | || |||||| | |||||||| |||||||| ||||||
Sbjct 190 CTTCTCATCCGGCTG-CGGCGTTACGCCTCTACCGGATGGGAAGTGGCGGAAGTAGCGTC 248
Query 222 GTTTTGGATTCAGAGAACGGCGTCGAGACCGAGTCACGTAAGCTTCCTTCGTCGAAATAT 281
|| |||||| | ||||||||| | ||||| |||||||| ||||| || ||||| |||||
Sbjct 249 GTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCATCGTCAAAATAC 308
Query 282 AAAGGCGTTGTGCCTCAGCCTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAG 341
||||| || || |||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 309 AAAGGTGTGGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTACGAGAAACACCAA 368
Query 342 CGAGTTTGGCTCGGTACTTTCAACGAGGAAGAAGAAGCTGCGTC-TTCTTACGACATCGC 400
||||| |||||||| |||||||||||| ||||||||||||| || ||| |||||||||||
Sbjct 369 CGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGC-TCGTTCCTACGACATCGC 427
Query 401 CG-TGAGGAGATTCCGCGGCCGCGACGCCGTCA-CTAACTTCAA-ATCTCAAGTTGATGG 457
|| | | |||||||| ||||||||||||||| | |||||||| | | ||| |||
Sbjct 428 CGCTC-GTAGATTCCGTGGCCGCGACGCCGTCGTC-AACTTCAAGAAC----GTTC-TGG 480
Query 458 AAACGACGCCGAATCGGCTTTTCTTGACGCTCATTCTAAAGCTGAGATCGTGGATATGTT 517
|| |||| || | ||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 481 AA--GACGGTGATTTAGCTTTTCTTGAAGCTCACTCTAAGGCCGAGATCGTGGATATGTT 538
Query 518 GAGGAAACACACTTACGCCGATGAGTTTGAGCAGAG---TAGACGGAAGTT-TGT-TAAC 572
||| ||||||||||||||||| ||| |||| || | || |||| ||| | | | |
Sbjct 539 GAGAAAACACACTTACGCCGACGAGCTTGAACAAAACAATAAACGGCGGTTGTTTCTCTC 598
Query 573 -G--G-CG--A-CGGAAAACGCTCTGGGTTGGAG-ACGGCGACGTACGGAAACGACG-CT 623
| | || | ||||||||| | || | ||| || || | | |||||| |
Sbjct 599 CGTCGACGTTAACGGAAAACG-TAACGGATCGAGTACA---AC-T-CA-AAACGAAAAC- 650
Query 624 GTTTTGA-GAGCGCGTGAGGTT-TTGTTCGAGAAGACTGTTACGCCGAGCGACGTCGGGA 681
||||| | || ||||||| ||| || ||||||||| ||||||| || |||||||||||||
Sbjct 651 GTTTTAAAGA-CGCGTGAAGTTCTT-TTCGAGAAGGCTGTTACACCTAGCGACGTCGGGA 708
Query 682 AGCTGAACCGTTTAGTGATACCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGA 741
|||| |||||| | |||||||| ||||||||||||||||| || |||||||||||| | |
Sbjct 709 AGCTAAACCGTCTCGTGATACCTAAACAACACGCGGAGAAACACTTTCCGTTACCGTC-A 767
Query 742 TGACGACGGCGATGGGGATGAATCCGTCTCCGACGAAAGGCGTTTTGATTAACTTGGAAG 801
| || | | || | | | | || | || ||||||||||| ||||| ||||
Sbjct 768 ---C--CGTC-ACCGGCA-G--T--GACT---A--AA-GGCGTTTTGATCAACTTCGAAG 810
Query 802 A--TAGAACAGGGAAAGTGTGGCGGTTCCGTTACAGTTACTGGAACAGCAGTCAAAGTTA 859
| | ||| || ||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 811 ACGTT-AAC-GGCAAAGTGTGGAGGTTCCGTTACTCATACTGGAACAGTAGTCAAAGTTA 868
Query 860 CGTGTTGACCAAGGGCTGGAGCCGGTTCGTTAAAGAGAAGAATCTTCGAGCCGGTGATGT 919
||||||||||||||| ||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct 869 CGTGTTGACCAAGGGATGGAGTCGATTCGTCAAGGAGAAGAATCTCCGAGCCGGTGATGT 928
Query 920 GGTTTGTTTCGAGAGATCAACCGGACCAGACCGGCAA-TTGTATATCCACTGGAAAGTCC 978
||| |||||||||||| ||||||| ||||||||| || ||||| | ||||||||||
Sbjct 929 TGTTACTTTCGAGAGATCGACCGGACTAGACCGGCAGCTT-TATATTGATTGGAAAGTCC 987
Query 979 GGTC---T---AGT-----CC-GGTTCAGACTG-TGGTTAGGCTATTCGGAGTCAACAT- 1024
| || | || || ||||||| || ||||| |||| |||||||| | ||
Sbjct 988 GATCCGGTCCGAGGGAAAACCCGGTTCAGG-TGGTGGTTCGGCTTTTCGGAGTTGATATC 1046
Query 1025 TTTCAATGTGAGTAACGAGAAACCAAACGACGTCGCAGTAGAGTGTGTTGGCAAGAAGAG 1084
||| ||||||| || || ||| ||||||||||||| || | || | ||| || | |||
Sbjct 1047 TTT-AATGTGACTACCGTGAAGCCAAACGACGTCGTAGCCGTTTGCGGTGG-AA-A-GAG 1102
Query 1085 ATCTCGGGAAGATGAT--T-TGTTTTCGTTAGGGTGTTCCAAGAAGCAGGCGATTATCAA 1141
|||||| || | |||| | ||||| ||||| |||||||||||||||||||||| |||||
Sbjct 1103 ATCTCGAGATGTTGATGATATGTTTGCGTTACGGTGTTCCAAGAAGCAGGCGATAATCAA 1162
> Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1
Length=1176
Score = 285 bits (154), Expect = 6e-76
Identities = 561/748 (75%), Gaps = 65/748 (9%)
Strand=Plus/Plus
Query 192 TACAGAATGGGAAGCGGCGGAAGC-AGCGTCGTT-TTGGATTCAGAGAACGGCGTCGAGA 249
||||||||||||| |||||| | ||||| ||| || |||||||||||||| ||||||
Sbjct 162 TACAGAATGGGAA---GCGGAA-CAAGCGTGGTTCTT-GATTCAGAGAACGGTGTCGAGG 216
Query 250 CCGAGTCACGTAAGCTTCCTTCGTCGAA-ATAT-AAAGGCGTTGTGCCTCAGCCTAACGG 307
| || ||| | ||||||||||| || || || | ||||| ||||| ||||| || || ||
Sbjct 217 CAGAATCAAGAAAGCTTCCTTCTTC-AAGAT-TCAAAGGTGTTGTTCCTCAACCAAATGG 274
Query 308 AAGATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTTTCAACGA 367
||||||||||||||||||||||||||| || || || || ||||| ||||||||||||||
Sbjct 275 AAGATGGGGAGCTCAGATTTACGAGAAACACCAACGCGTATGGCTTGGTACTTTCAACGA 334
Query 368 GGAAGAAGAAGCTGCGTCTT-CTTACGACATCGCCG-TGAGGAGATTCCGCGGCCGCGAC 425
||||| ||||| || || | |||||||| |||| | | | | ||||| ||||| |||
Sbjct 335 AGAAGACGAAGCAGC-TCGTGCTTACGACGTCGCGGCTCACC-GTTTCCGTGGCCGTGAC 392
Query 426 GCCGTCACTAACTTCAAATCTCAA-GTTGATGGAAACGACGCCGAA-TCGGCTTTTCTTG 483
||||| ||||| |||||| || | | | || ||| | ||| | | ||| |||
Sbjct 393 GCCGTTACTAATTTCAAAGA--AACGACGTTCGA--CGATGACGAGGTTGA-TTT-CTTA 446
Query 484 A-CGCTCATTCTAAAGCTGAGATCGTGGATATGTTGAGGAAACACACTTACGCCGATGAG 542
| ||| ||||| ||| | |||||||| ||||||||||| |||||||||||| || |||
Sbjct 447 AACGCACATTCGAAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAG 506
Query 543 TTTGAGCAGAGTAGACGGAAGTTTGTTAACGGCGACGGAAA-ACG-CT-CTGG-GTT-GG 597
|| ||||| || | ||| || || ||||| ||||||| | | | | || ||| ||
Sbjct 507 TTAGAGCAAAGGAAACGTAACC--GT-AACGGTAACGGAAACAAGACGAC-GGAGTTTGG 562
Query 598 AGACGGCGAC-GTA-CGGAAACGACGCTGTTTTGAGAGCG-CGTGAGGTTT-TGTTCGAG 653
|| || || ||| | ||| |||| | | || || ||| || |||| |||
Sbjct 563 TTCCGTT-ACCGTGGCGGTTATAACGGGGTTTAAA-A-CGTCG-GAG-TTACTGTTTGAG 617
Query 654 AAGACTGTTACGCCGAGCGACGTCGGGAAGCTGAACCGTTTAGTGATACCGAAACAACAC 713
|| || || ||||| || ||||||||||| || ||||||||||| ||||| ||||| ||
Sbjct 618 AAAACGGTAACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAAACACCAA 677
Query 714 GCGGAGAAGCATTTTCCGTTACCGGCGATGACGACGGCGATGGGGATGAATCCGTCTCCG 773
|||||||| ||||||||||||||| | | | | || || || | |||||||
Sbjct 678 GCGGAGAAACATTTTCCGTTACCGT---T-A-G--GTA-ATA---AT-AA-C-GTCTCCG 723
Query 774 ACGAAAGGCGTTTTGATT-AACTTGGAAGA--TAGAACAGGGAAAGTGTGGCGGTTCCGT 830
||||| | || || || || ||||| | ||| || ||||||||| ||||||||
Sbjct 724 TT-AAAGGTATACTG-TTGAATTTCGAAGACGTT-AAC-GGAAAAGTGTGGAGGTTCCGT 779
Query 831 TACAGTTACTGGAACAGCAGTCAAAGTTACGTGTTGACCAAGGGCTGGAGCCGGTTCGTT 890
||| ||||||||| || ||||||||||| ||||||||||| || ||||| | || |||
Sbjct 780 TACTCTTACTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTTGGAGTAGATTTGTT 839
Query 891 AAAGAGAAGA-ATCTTCGAGCCGGTGAT 917
|||||||||| | ||| | |||||||||
Sbjct 840 AAAGAGAAGAGA-CTTTGTGCCGGTGAT 866
> Ahg920198 jgi|Araly1|920198|scaffold_101479.1
Length=1076
Score = 279 bits (151), Expect = 3e-74
Identities = 588/785 (75%), Gaps = 86/785 (11%)
Strand=Plus/Plus
Query 192 TACAGAATGGGAAGCGGCGGAAGC-AGCGTCGTTTTGGATTCAGAGAACGGCGTCG-AGA 249
||||| ||||||| |||| | | ||||| || || ||||||||||||||||| | ||
Sbjct 120 TACAGGATGGGAA---GCGG-ATCAAGCGTGGTGTTAGATTCAGAGAACGGCGTAGAAG- 174
Query 250 CCGAGTC-ACGTAAGCTTCCTTCGTCGAAATATAAAGGCGTTGTGCCTCAGCCTAACGGA 308
| || || | | |||||||| || || ||||| ||||| || ||||| || || ||||||
Sbjct 175 CTGAATCTA-GGAAGCTTCCGTCATCAAAATACAAAGGTGTGGTGCCGCAACCAAACGGA 233
Query 309 AGATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTTTCAACGAG 368
|||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||
Sbjct 234 AGATGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGTACATTCAACGAA 293
Query 369 GAAGAAGAAGCTGCGTC-TTCTTACGACATCGCCGTG-AG-GAGATTCCGCGGCCGCGAC 425
||||| |||||||| || ||| |||||| | || || | | | ||||| || || |||
Sbjct 294 GAAGACGAAGCTGC-TCGTTCCTACGACGTGGCGGTTCACCG-G-TTCCGTGGTCGTGAC 350
Query 426 GCCGTCACTAACTTCAAAT-C-TCAAGTTGATGGAAACGACGCCGAA-TCG-GCTTTTCT 481
|||||||| || || ||| | | ||| ||||| ||| | ||| ||| | || ||
Sbjct 351 GCCGTCACAAATTTTAAAGACGTGAAG---ATGGA--CGAAGACGAGGTCGAG-TT--CT 402
Query 482 TGACG-CTCATTCTAAAGCTGAGATCGTGGATATGTTGAGGAAACACACTTACGCCGATG 540
||| ||||||| ||| |||||||||| ||||||||||||||||| ||||| ||| |
Sbjct 403 TGAATTCTCATTCGAAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAG 462
Query 541 AGTTTGAGCAGAGTAGACGGAAGTTTGTTAACGGCGACGGAAA-ACGCTCT-GG--GTTG 596
|||| |||||||||| |||| || || ||||| ||||||| | | | | || | ||
Sbjct 463 AGTTAGAGCAGAGTAAACGGC-GTC-GT-AACGGTAACGGAAACATGGT-TAGGACGATG 518
Query 597 G-AGACGGCGACGTACG-GAAACGACGCTGTTTTGA-GA-GC-GC---G-T-G----AGG 642
| ||| || || | | || || | ||||| || || | | | | | |||
Sbjct 519 TTA-ACGTCGGGGTT-GAGTAATGATGGTGTTTCGACGACGGAGTTTAGATCGGCGGAGG 576
Query 643 TTTTGTTCGAGAA-GACTGTTACGCCGAGCGACGTCGGGAAGCTGAACCGTTTAGTGATA 701
|||| ||||| | | || ||||| |||||||| |||||||| |||||||| || |||
Sbjct 577 CACTGTTTGAGAAAG-CGGTAACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATA 635
Query 702 CCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGATGACGACGGCGATGGGGATG 761
|||||||| ||||||||||| || |||||||||||| | | | | | |
Sbjct 636 CCGAAACATCACGCGGAGAAACACTTTCCGTTACCG----T--C-A-----A-G----T- 677
Query 762 AATCCGTCTCCGACGAAAGGCGTTTTGATT-AACTTGGAAGATAG--AACAGGGAAAGTG 818
|| | || |||| |||||| || ||| || ||||| || ||| | ||| |||||||||
Sbjct 678 AA-C-GTTTCCGT-GAAAGGAGTGTTG-TTGAACTTTGAGGAT-GTTAAC-GGGAAAGTG 731
Query 819 TGGCGGTTCCGTTACA-GTTACTGGAACAGCAGTCAAAGTTACGTGTTGACCAAGGGCTG 877
||| ||||||||||| || | |||||||| ||||| ||||| || ||||| || || ||
Sbjct 732 TGGAGGTTCCGTTACTCGT-ATTGGAACAGTAGTCAGAGTTATGTTTTGACTAAAGGTTG 790
Query 878 GAGCCGGTTCGTTAAAGAGAAGAATCTTCGAGCCGGTGATGTGGTTTGTTTCGAG-AGAT 936
|||| |||||||||| ||||||||||| || || ||||| |||||| | ||| || ||||
Sbjct 791 GAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGCTTC-AGTAGAT 849
Query 937 C-AAC 940
| |||
Sbjct 850 CTAAC 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5