BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G25682.1 Length=1244 Score E Sequences producing significant alignments: (Bits) Value Ahg912447 jgi|Araly1|912447|Al_scaffold_0001_2701 1498 0.0 > Ahg912447 jgi|Araly1|912447|Al_scaffold_0001_2701 Length=942 Score = 1498 bits (811), Expect = 0.0 Identities = 900/942 (96%), Gaps = 9/942 (1%) Strand=Plus/Plus Query 97 ATGTCGACTCTATCAGCTGCCAGGGCAGATAACTTTTACTATCCTCCAGAATGGACTCCG 156 ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1 ATGTCGACTCTGTCAGCTGCCAGGGCGGATAACTTTTACTATCCCCCAGAATGGACTCCA 60 Query 157 GATCAAGGTTCCTTGAACAAGTTTCAAGGACAGCATCCTCTCAGAGAGAGGGCAAAGAAA 216 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GATCAAGGTTCCTTGAACAAGTTTCAAGGACAGCATCCTCTGAGAGAGAGGGCAAAGAAA 120 Query 217 ATTGGCGAGGGAATTTTGGTCATAAGGTTCGAGATGCCCTATAATATATGGTGTGGTGGC 276 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATTGGCGAAGGAATTTTGGTCATAAGGTTCGAGATGCCCTATAATATATGGTGTGGTGGC 180 Query 277 TGTAGTTCTATGATCGCCAAGGGTGTTCGATTTAATGCAGAAAAGAAGCAAGTTGGCAAC 336 || | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 181 TGCAATTCTATGATCGCCAAGGGTGTTCGATTTAATGCAGAAAAAAAGCAAGTTGGGAAC 240 Query 337 TATTATTCTACAAAGATATGGAGCTTTGCAATGAAATCACCATGCTGTAAACATGAGATA 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TATTATTCTACAAAGATATGGAGCTTTGCAATGAAATCACCATGCTGTAAACATGAGATA 300 Query 397 GTCATTCAGACAGATCCTCAGAACTGCGAGTATGTAATCACTAGTGGTGCCCAGAAGAAG 456 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 GTCATTCAGACAGATCCTCAGAACTGCGAGTATGTTATCACTAGTGGTGCCCAGAAGAAG 360 Query 457 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTGAGGAATATGAAGCAGAAGATGCAGAAACCATGGAGCTCACTGCTGAGCAAGAGAAG 420 Query 517 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAGAAG 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 GGAAAGCTTGCAGACCCCTTTTATCGTCTAGAGCACCAGGAAGTAGATTTACAGAAAAAG 480 Query 577 AAAGCAGCTGAACCGCTTTTGGTCCGTCTTCAGCGAGTCTCAGATGCAAGACATGCTGAT 636 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 481 AAAGCAGCAGAACCGCTTTTGGTCCGTCTCCAGCGAGTCTCAGATGCAAGACATGCTGAT 540 Query 637 GATTACTCCCTAAACAAAGCTCTACGTGCACAACTTAGGCGACACAGAAAACGTGTAGCA 696 ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 541 GATTACTCCCTAAACAAAGCTCTGCGTGCACAACTTAGGGGACACAGAAAACGTGTAGCA 600 Query 697 GAGGAAGAGACTGCTTCAAGGAAGCTAGGCTTGGGGATAAGACTGCTTCCAAAGAGTGAA 756 || |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 601 GAAGAAGAGGCTGCTTCAAGGAAGTTAGGCTTGGGGATAAGACTTCTTCCAAAGAGTGAA 660 Query 757 GAAGATATTAAAGCTGCCTCAAACGTGAAATTCAAGAGCAAGTTTGATAAGAATCGAAAG 816 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 661 GAAGATATTAAAGCTGCCTCAAACGTGAAATTCAAGACCAAGTTTGATAAGAATCGAAAG 720 Query 817 GACAAACGAGCACTGATCCATGCATCTTCCATTTTTCCCGAGTCGTCTTACTC-AT--C- 872 |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || | Sbjct 721 GACAAACGAGCACTAATCCATGCATCTTCCATTTTTCCCGAGTCATCTTACTCGATGTCA 780 Query 873 -----GAGCAAGAAAAGAATGGAGCTGGAAGCAAAAAGAAGGAAAATAAGCGCAGCATCC 927 ||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 781 TCATCGAGCAAGAAAAGAATGGAGCTAGAAGCAAAGAGAAGGAAAATAAGTGCAGCATCG 840 Query 928 GCATCAAGCCTATTGAGAGGAGGATTCAAAGCTTCATCTTTATCTACAAACCCATCAGCA 987 ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 841 GCATCAAATCTGTTGAGAGGAGGATTCAAAGCTTCAGCTTTATCTACAAACCCATCAGCA 900 Query 988 AGCAAGCCCAAGGTTTCATCAGTTTCTGTAAGGAAACTCTAG 1029 |||||| ||||||||||||||||||||||||||||||| ||| Sbjct 901 AGCAAGTCCAAGGTTTCATCAGTTTCTGTAAGGAAACTGTAG 942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46471835823 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5