BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26090.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472808 jgi|Araly1|472808|fgenesh2_kg.1__2762__AT1G26090.1 2518 0.0
> Ahg472808 jgi|Araly1|472808|fgenesh2_kg.1__2762__AT1G26090.1
Length=1624
Score = 2518 bits (1363), Expect = 0.0
Identities = 1548/1636 (95%), Gaps = 17/1636 (1%)
Strand=Plus/Plus
Query 16 GTAGAACGCAAACGTGAATTGTGTGTCAGCTCCGATCACTCCTTTTATCACAAGCGGCTC 75
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 GTAGAACGCAAACGTGAATTGTGT-T-AGCTCCGATCACTCCTTTTATCACAAGCGGCTC 58
Query 76 TAGTGGAGCTCCGGCCAATCTGATCTTTTGAATTTTACA-CCAAAAATAATAATAATGGT 134
|||| ||||||||||||||||||||||||||||||||| ||||||| || || ||||||
Sbjct 59 TAGTTAAGCTCCGGCCAATCTGATCTTTTGAATTTTACACCCAAAAA-AAAAAAAATGGT 117
Query 135 GTCTTTGGTCAATTCTTCTCTAACATGCTCAAGCCTTACTCTGAATCTCCTTCCCATTCT 194
| |||||||| ||||| | ||||||||||||| |||||||||||||||||||| ||
Sbjct 118 GGCTTTGGTC---GCTTCT-T--CATGCTCAAGCCTAACTCTGAATCTCCTTCCCATCCT 171
Query 195 GCGTACGGAAACACCTTCACTCTCCAGGAAGCGTCGAGCAGCTTATGTGGCGGCTACATC 254
||||||||| |||||||||||||||||||||||||| |||||| ||||| ||| |||||
Sbjct 172 TCGTACGGAAGCACCTTCACTCTCCAGGAAGCGTCGACCAGCTTCTGTGGTGGCAACATC 231
Query 255 TTCTAGAGATGTTAACGATACCGCCGCTGATTCTTCTCAGAAACTCACCAAATTCGTCAC 314
||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 232 TTCTAGAGATGACAACGATACCGTCGCTGATTCTTCTCAGAAACCCACCAAATTCGTCAC 291
Query 315 CTTTCTCGGAAAAGGCGGCTCCGGCAAGACCACCGCCGCTGTTTTCGCCGCTCAGCATTA 374
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 292 ATTTCTCGGCAAAGGCGGCTCCGGAAAGACCACCGCCGCTGTTTTCGCCGCTCAGCATTA 351
Query 375 CGCATTGGCTGGGCTCAGTACATGTTTGGTGATACATAATCAAGACCCTTCTGCTGAATT 434
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 352 CGCATTGGCTGGGCTCAGTACATGTTTAGTGGTACATAATCAAGACCCTTCTGCTGATTT 411
Query 435 CCTCCTTGGAAGCAAGATTGGGACTTCTCCTACCTTGATCAACGACAATCTCTCTGTCAT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 412 CCTCCTTGGAAGCAAGATTGGGACTTCTCCTACCTTGATCAACGACAATCTCTCTGTGAT 471
Query 495 TAGGCTAGAAACCACAAAAATGCTTCTAGAACCTCTTAAACAGCTGAAGCAAGCAGATGC 554
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TAGGCTCGAAACCACAAAAATGCTTCTAGAACCTCTTAAACAGCTGAAGCAAGCAGATGC 531
Query 555 TCGACTTAATATGACCCAAGGGGTTCTTGAAGGGGTGGTTGGAGAAGAGCTAGGAGTACT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TCGACTTAATATGACCCAAGGGGTTCTTGAAGGGGTGGTTGGAGAAGAGCTAGGAGTACT 591
Query 615 TCCAGGGATGGATTCCATCTTTTCAATGCTTGAACTCGAGAGGCTTGTTGGTTTCTTTAG 674
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 592 TCCAGGGATGGATTCCATCTTTTCAATGCTTGAACTTGAGAGGCTTGCTGGTTTCTTTAG 651
Query 675 GCAAGCAACCCGAAAGAATCACAAGGGG-AAGCCTTTTGACGTTATAATTTATGATGGCA 733
|||||||||||||| ||| ||||||||| || |||||||||||||| ||||| |||||||
Sbjct 652 GCAAGCAACCCGAATGAACCACAAGGGGGAA-CCTTTTGACGTTATCATTTACGATGGCA 710
Query 734 TTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGATTGTATGCGA 793
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 711 TTAGCTCTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGATTGTATGTGA 770
Query 794 AATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAGGCTAACAAGTCCGTCCATTA 853
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 771 GATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAGGCTAACAAGTCCTTCCATTA 830
Query 854 TGAGATTTGTTGATGAGTCAATGAACATAAACAGTAATAAGTCGCCTTTCGATGGTATGA 913
||||||||||||||||||| |||||||||| | | |||||||||||||| ||||||||||
Sbjct 831 TGAGATTTGTTGATGAGTCCATGAACATAAGCGGCAATAAGTCGCCTTTTGATGGTATGA 890
Query 914 CAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAGACTGGCGCTTCTGCTTGGA 973
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 891 CAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTGGGAGACCGGTGCTTCTGCTTGGA 950
Query 974 GAGATCCAGAGAGATTCAGGAGTTTTCTTGTAATGGACCCAAACAATCCTATGTCTGTTA 1033
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 951 GAGATCCAGAGAGATTCAGGAGTTTTCTTGTAATGGACCCAAATAATCCTATGTCTGTTA 1010
Query 1034 AAGCTGCATTACGGTATTGGGGTTGTACAGTACAAGCAGGATCTCATGTTTCTGGGGCGT 1093
|||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1011 AAGCCGCATTACGGTATTGGGGATGTACAGTACAAGCAGGATCTCATGCTTCTGGGGTGT 1070
Query 1094 TTGCTATTTCTTCTTCTCATCTGACCAGCCAAATCCC-GAAAGCAGATTTTGTGCCACTG 1152
||||||||||||||||||||| ||| ||| ||||||| ||| | |||||||||||| |||
Sbjct 1071 TTGCTATTTCTTCTTCTCATCCGACAAGCAAAATCCCAGAA-GAAGATTTTGTGCCGCTG 1129
Query 1153 CCATTTGCTTCTGCATCAGTTCCATTTACTATAACTGGTCTGGATTGGGACAAAATTCTG 1212
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 CCCTTTGCATCTGCATCAGTTCCATTTACTATAACTGGTCTGGATTGGGACAAAATCCTG 1189
Query 1213 CTGGACCAAGCGAATTCAAGTATCCGGGAACTTCTCTCTGAAACTGTAAGCCATGGGACC 1272
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1190 CTGGACCAAGCGAATTCAAGTATCCGGGAACTTCTTTCTGAAACTGTTAGCCATGGAACC 1249
Query 1273 AGCTTGACACAAACAGTAATGTTTGATACAGCAAAGAAATTGGTGACTCTTTTCATGCCG 1332
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1250 AGCTTGACACAAACAGTAATGTTTGATTCAGCAAAGAAATTGGTGACTCTTTTCATGCCG 1309
Query 1333 GGGTTTGAAAAATCAGAAATCAAACTGTATCAGTATAGAGGAGGTTCTGAGCTCTTAATA 1392
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1310 GGGTTTGAAAAATCGGAAATCAAACTGTATCAGTACAGAGGAGGTTCTGAGCTCTTAATA 1369
Query 1393 GAAGCTGGGGACCAAAGACGAGTGATTCATTTACCGTC-TCAGATTCAAGGAAAAGTTGG 1451
|||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 1370 GAAGCTGGGGACCAAAGACGTGTGATTCATTTGCC-TCCTCAGATTCAAGGAAAAGTTGG 1428
Query 1452 AGGAGCAAAGTTTGTGGACAGAAGTCTCATCGTCACAATGCGGTAATACATTTTCGAAGA 1511
|||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1429 TGGAGCAAAGTTTCTGGACAGAAGTCTCATCATCACAATGCGGTGATACATTTTCGAAGA 1488
Query 1512 ACTAATTTGTTCTTTTTGTACACCAGAGATGTGTAGTTTGTCCCCAAA-CCAATACAAAC 1570
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1489 ACTAATTTGTTCTTTTTGTACACCAGAGATGTGTAGTTTGTCCCCAAAACCAATACAAAC 1548
Query 1571 TAAAAAGAATGAAAATTAAAAACTCAAGAAGACAAACATTTAGGACGATCTTGAGATGAA 1630
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1549 TAAAAAGAATGAAGATTAAAAACTCAAGAAGACAAACATTTGGGACGATCTTGAGATGAA 1608
Query 1631 TAAACGAGTTTCTCAT 1646
||||||||||||||||
Sbjct 1609 TAAACGAGTTTCTCAT 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5