BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26120.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472805 jgi|Araly1|472805|fgenesh2_kg.1__2759__AT1G26120.1 2619 0.0
> Ahg472805 jgi|Araly1|472805|fgenesh2_kg.1__2759__AT1G26120.1
Length=1664
Score = 2619 bits (1418), Expect = 0.0
Identities = 1592/1673 (95%), Gaps = 24/1673 (1%)
Strand=Plus/Plus
Query 61 GGATCAGGAGGAAGTGAGAAAAAATGCCGTCGCAGATTCTCCAAATCTCACATCATCTTC 120
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1 GGATCAGGAGGAAGTGAGAAAAAATGCCGTCGCAGATTCTCCAAATCT--CA-CATCTTC 57
Query 121 CACCTAAATCTTCACCATCGACGGAAATGATGTTCAAGTCTTTGATTTACGATGATCCTT 180
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 CACCTAAATCTTCACCATCCACGGAAATGATGTTCAAGTCTTTCATTTACGATGATCCTT 117
Query 181 CTACGA--C--C---CTTC-TC-TCTCGATTTGGTGATGACCACCACACCATTTCTTCTA 231
| |||| | | |||| || ||||||||| ||||||||||||||| ||||||| |||
Sbjct 118 CAACGACCCTTCTTTCTTCTTCTTCTCGATTTTGTGATGACCACCACATCATTTCTGCTA 177
Query 232 CCGTTAAGCCTCTCCTCTCCCGCTCTTCCAGCTACAACGGC-ACGGC-C-ATGAAGACGT 288
||||||||||||||||||||||||||||||||||||||||| || | | ||||| |
Sbjct 178 CCGTTAAGCCTCTCCTCTCCCGCTCTTCCAGCTACAACGGCGGCGTCACGGCGAAGAAGA 237
Query 289 CTTCTTCTTCTTCTGCTGGTGGATTTACTGGTTGGTATCAGAATAGACGCCGACGATCTA 348
| ||||| || |||| |||||| || ||||||||||||||||||||| | ||||||||||
Sbjct 238 CGTCTTCGTCGTCTGGTGGTGGGTTAACTGGTTGGTATCAGAATAGATGGCGACGATCTA 297
Query 349 ACAGCGATAACTGTCTCTCTGCGTTTTCCGATGATACTAATGGAACCGCCGACGGTGGTA 408
|||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 298 ACAGCGATAACTGTCTCTCTGCGTTTCCCGATGGTACTAATGGAA---CCGACGGTGGTA 354
Query 409 ATAATAGCGGCGACCGTCAAACTACTATTGGTCAGGAGGTTGGCCACGCCGCTGCAGAAA 468
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 355 GTAATAGCGGCGACCGTCAAACTACTATTGGCCAGGAGGTTGGCCACGCCGCTGCAGAGA 414
Query 469 CATTCTTGTTGACCCGTCTTTGTTTGAAGCTCCTAAGCTATCTTGGGGTAGGTTATAGAT 528
| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 415 CGTTTTTGTTGACTCGTCTTTGTTTGAAGCTCCTTAGCTATCTTGGGGTAGGTTATAGAT 474
Query 529 GGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTC 588
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 475 GGATTACAAGATTTATGGCACTTGGATGTTATGCATTTCTTCTAATGCCAGGCTTTATTC 534
Query 589 AAGTCGGATACTACTATTTCTTCTCTCCTTACGTTCGCAGAAGTATAGTTTACGGTGATC 648
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAGTCGGATATTACTATTTCTTCTCTCCTTACGTTCGCAGAAGTATAGTTTACGGTGATC 594
Query 649 AACCAAGAAACAGGCTTGACTTGTATCTACCTAAGAACTCTACTGGACCAAAACCAGTTG 708
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 595 AACCAAGGAACAGGCTTGACTTGTATCTACCTAAAAACTCTACCGGACCAAAACCAGTTG 654
Query 709 TGGCGTTTGTGACTGGTGGAGCCTGGATTATTGGTTATAAGGCGTGGGGTTCTCTCTTAG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGGCGTTTGTGACTGGTGGAGCCTGGATTATTGGTTATAAGGCGTGGGGTTCTCTCTTAG 714
Query 769 GACAGCAATTATCAGAAAGAGATATTATTGTGGCATGCATTGATTACAGGAATTTTCCGC 828
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GACAGCAGTTATCAGAAAGAGATATTATTGTGGCATGCATTGATTACAGGAATTTTCCGC 774
Query 829 AAGGATCTATTAGTGACATGGTCAAGGATGCTTCTTCTGGCATCTCATTTGTTTGCAATC 888
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGGGATCTATTAGTGACATGGTCAAGGATGCTTCTTCTGGCATCTCATTTGTTTGCAATC 834
Query 889 ATATTGCTGAGTATGGAGGTGATCCAGATAGGATCTATCTGATGGGTCAGTCTGCTGGTG 948
|||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 835 ATATTGCTGAGTATGGAGGTGATCCAGACAGAATTTATCTGATGGGTCAGTCTGCCGGTG 894
Query 949 CACATATCGCAGCTTGCACCATTGTAGAGCAGGTCATTAAAGAGTCAGGGGAGGGGGACA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CACATATCGCAGCTTGCACCATTGTAGAGCAGGTCATTAAAGAGTCAGGGGAGGGGGACA 954
Query 1009 GTGTCTCTTGGAGTAGTTCACAAATAAATGCTTATTTTGGTCTATCTGGAGGATACAACC 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTGTCTCTTGGAGTAGTTCACAAATAAATGCTTATTTTGGTCTATCTGGAGGATACAACC 1014
Query 1069 TTTTGAACCTTGTGGACCACTTCCATAGCAGGGGGCTGTACCGTTCCATCTTTCTGAGCA 1128
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TTTTGAGCCTTGTGGACCACTTCCATAGCAGGGGGCTGTACCGTTCCATCTTTCTGAGCA 1074
Query 1129 TCATGGAAGGAGAGGAATCATTAAGGCAGTTCTCTCCTGAATTAGTAGTGCAAAACCCGA 1188
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 TCATGGAAGGAGAGGAATCATTAAGGCAGTTTTCTCCTGAATTAGTAGTGCAAAACCCGA 1134
Query 1189 ATCTCAAACACATCATTGCTCGTCTCCCACCTTTTATTTTATTCCATGGTACTGATGACT 1248
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1135 ATCTCAAACACATCATTTCTCGTCTCCCACCATTTATTTTATTCCATGGTACTGATGACT 1194
Query 1249 ACTCCATCCCGTCAGATGCAAGTAAATCTTTTGCGGAAACCCTCCAGAGGCTTGGGGCCA 1308
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACTCCATCCCTTCAGATGCAAGTAAATCTTTTGCGGAAACCCTCCAGAGGCTTGGGGCCA 1254
Query 1309 AAGCAAAAGTGATCCTTTACGAGGGGAAAACACACACGGATTTGTTTCTTCAGGATCCAA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AAGCAAAAGTGATCCTTTACGAGGGGAAAACACACACGGATTTGTTTCTTCAGGATCCAA 1314
Query 1369 TGAGAGGTGGAATAGATGAGATGTTTGAAGATATAGTAACAGTGGTTCTGGGAGACGATC 1428
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1315 TGAGAGGTGGAAAAGATGAGATGTTTGAAGATATAGTATCAGTGGTTCTGGGAGACAATC 1374
Query 1429 AAGAAGC-GATTGGTAAAAGCGTAGATAGAAGGCGTCTTGTACCTGAATTCATGTTGAAG 1487
||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1375 AAGAA-CTGATTGGTAAAAGTGTAGACAGAAGGCGTCTTGTACCTGAATTCATGTTGAAG 1433
Query 1488 TTGGCTCACTGGGTCAGTCCGTTCTAACTCCTACACTCTTATCTCCCAGAAGATCAAAGG 1547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1434 TTGGCTCACTGGGTCAGTCCGTTCTAACTCCTACACTCTTATCTCCCAGAAGATCAGAGG 1493
Query 1548 AAGT-ACATTCCTTCTTCCAGTGATACAGACGGGTCAATGTGCATATTACTTAACAAGGA 1606
|| | |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1494 AA-TCACATTCTTTCTTCCAGTGATACAGACGTGTCAGTGTGCATATTACTTAACAAGGA 1552
Query 1607 AAACAGATCCCACTATACTTTGACGATACAGATGATTTTGAACTTTGATGATGATGATAT 1666
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AA-CAGATCCCACTATACTTTGACGATACAGATGATTTTGAACTTTGATGATGATGATAT 1611
Query 1667 TGTATCCCGGTTTGCAA-ATACACTGATTATTTCGTCATTGCCTGTTTGTGTT 1718
||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1612 TGTATCCCGGTTTGCAATATACTCTGATTATTTCGTCATTCCCTGTTTGTGTT 1664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5