BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26180.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921642 jgi|Araly1|921642|scaffold_102923.1 1386 0.0
> Ahg921642 jgi|Araly1|921642|scaffold_102923.1
Length=922
Score = 1386 bits (750), Expect = 0.0
Identities = 865/919 (94%), Gaps = 14/919 (2%)
Strand=Plus/Plus
Query 63 TTCTTCTTCTTCGCCTCCATGAATCTCCTCAAGACGATTCATTACCAGTCTACCATTACT 122
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 3 TTCTTCTTCTTCGCCTCCATGAATCTCCTCAAAACGATTCATTACCAGTCCACCATTACT 62
Query 123 CGATTTTACCGTTTTGCCCCTACACGCTCCTTTG------C---TTC-T--TCTGTGTCA 170
| |||||||||||||||||||||||||||||||| | ||| | ||||| |||
Sbjct 63 CAATTTTACCGTTTTGCCCCTACACGCTCCTTTGCTTCTTCTTTTTCTTCATCTGTTTCA 122
Query 171 CTCTCTCCACAGAGACACATAATCTCTCTCGTTTCTATCTCTAATCGTGGAAGGTGCTTC 230
||||||||||| |||| ||||||||| ||||||||||||||||||| | |||||||| ||
Sbjct 123 CTCTCTCCACAAAGACCCATAATCTCCCTCGTTTCTATCTCTAATCATCGAAGGTGC-TC 181
Query 231 -GCATTCTCGAGCGTCTCTGGTGCTTCGCTTTATAATAATCAAGAGGATGGGAAGAAAGA 289
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 182 TGCATTCTCTAGCGTCTCTGGTGCTTCGATTTATGGTAATCAAGAGGATGGGAAGAAAGA 241
Query 290 AGAATCCGAGAGAAATTACGCTTCGACGAAGGAAGGAGATGAAGTGGTTTACCAGAAAAC 349
|||||| ||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 242 AGAATCTGAGAGAAATTATGCTTCGGCGGAGGAAGGAGATGAAGTGGTTTACCAGAAAAC 301
Query 350 GCTGAGATTAGTAGAATGTGCCATGTTCGCTGCTGTGACAGGCCTCGTTTACTTTCTCAG 409
|||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 302 GCTGAGATTAGTGGAGTGTGCCATGTTCGCTGCTGTAACTGGCCTCGTTTACTTTCTCAG 361
Query 410 CAATTCTCTCGCCATTGAGAACTACTTTGGGTGTTTCTTCTCACTACCAATTGTGATTTC 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CAATTCTCTCGCCATTGAGAACTACTTTGGGTGTTTCTTCTCACTACCAATTGTGATTTC 421
Query 470 TTCGATAAGATGGAACATTGCAGGTGGCAGGAAGACAATGGTTGCTACTGTCATGCTGTT 529
||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 422 TTCCATAAGATGGAATATTGCTGGAGGCAGGAAGACAATGGTTGCTACTGTCATGCTCTT 481
Query 530 GTTCATATTATCAGGTCCGGTCAAGGCATTAACTTACTTTCTTACTCATGGTCTTGTGGG 589
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 482 GTTCATATTATCAGGTCCGGTCAAAGCATTAACTTACTTTCTTACTCATGGTCTTGTGGG 541
Query 590 GCTTGCACTGGGATCATTGTGGAGTATGGGGGCAAGCTGGCGTCTCTCGATTTTCTTGTG 649
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 542 GCTTGCACTGGGATCATTGTGGAGGATGGGGGCAAGCTGGCGTCTCTCGATTTTCGTGTG 601
Query 650 CACAATGGTTCGAGCATTGGGTCTCATAGGCTATGTTCTGACATCATCCTTCTTAATAAG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CACAATGGTTCGAGCATTGGGTCTCATAGGCTATGTTCTGACATCATCCTTCTTAATAAG 661
Query 710 AGAAAATATTCTCGCTGTGATCACAATTAACATCCACGCTTCTCTCTCTTATGTTTTCAC 769
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 662 AGAAAACATTCTTGCTGTGATCACAATTAACATCCACGCCTCTCTCTCTTATGTTTTCAC 721
Query 770 GGCCATGGGCCTGAACATAATGCCTTCGATGAGCCTCATTTATATGATATTTGGGACAGT 829
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 722 GGCCATGGGCCTGAACATAATGCCTTCAATGAGCCTCATTTATATGATATTTGGGACAGT 781
Query 830 GCTGTTACTTAACAGTGGATTCTTTGTGTTGTTGCTGCATCTGCTATACTCGATCTTCCT 889
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782 GCTGTTGCTAAACAGTGGATTCTTTGTGTTGTTGCTGCATCTGCTATACTCCATCTTCCT 841
Query 890 AACAAGACTAGGAATGAAATCTTCGTTGAGATTACCAGCCTGGTTGGACAAAGCTATATG 949
|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 842 CACAAGACTCGGAATGAAATCTTCGTTGAGATTACCAGCTTGGTTGGACAAGGCTATATG 901
Query 950 ATGGGAATCAGGATCTCTG 968
|||||||||||||||||||
Sbjct 902 ATGGGAATCAGGATCTCTG 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5