BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26218.1 Length=1135 Score E Sequences producing significant alignments: (Bits) Value Ahg472794 jgi|Araly1|472794|fgenesh2_kg.1__2748__AT1G26218.1 1230 0.0 > Ahg472794 jgi|Araly1|472794|fgenesh2_kg.1__2748__AT1G26218.1 Length=1100 Score = 1230 bits (666), Expect = 0.0 Identities = 739/775 (95%), Gaps = 1/775 (0%) Strand=Plus/Minus Query 362 AGCTTGTACAAGAAAGTGTAGTTAAAGAGACATTGTAATCTGTGCATTTACGAAATTAAA 421 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 775 AGCTTGTACAACAAAGTGTAGTTAAAGAGACATTGTAATCTGTGAATTTACGAAATTAAA 716 Query 422 ATTTAT-AAAGTTTCAAACTTTTTATTTCTTGTTTCTCTGTTTGCGTATAAAAACCATTC 480 |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 715 ATTTATAAAAGTTTGGAACTTTTCATTTCTTGTTTCTCTGTTTGCGTATAAAAACCATTC 656 Query 481 CTTTGATCCCATCCGGGTCAGAGACGAACCCAAGCGGGCGATAAAACCCGAGAACTCGAG 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 655 CTTTGATCCCATCCGGGTCAGAGACAAACCCAAGCGGGCGATAAAACCCGAGAACTCGAG 596 Query 541 GCTCTGAATACAGAGCAATGTTACAAATCCCTTTCACCTGTAAATCCTCAATCAACCGCT 600 |||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| Sbjct 595 GCTCCGAATACAGAGCGATGTTACAGATCCCTTTCACCTGCAAATCCTCAATCAACCGCT 536 Query 601 CCATCACCGCCTTCCCAAGTCCACAGCTTTGAAACGATGGATCAACCACAACATCCCATA 660 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 535 CCATCACCGCCTTCCCAAGTCCACAGCTTTGAAACGACGGATCAACCACCACATCCCATA 476 Query 661 TGATCGCATTGAAAACTCCGTCACCGGTTGCTCTCGCAAACGCTACAGGCCTCCGCGTTT 720 ||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||| Sbjct 475 TGATCGCATTGAATACTCCGTCACCGGTCGCTCTCGCAAACGCCACAGGCCGCCGCGTTT 416 Query 721 TCTCGTACTCTACCCAAAGCAACGCGTCTGTGTGCTGCAACGCCACCTCGATTTTCGCCG 780 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 415 TCTCGTACTCCACCCAAAGCAACGCGTCTGTGTGCTGCAACGCCACCTCGATCTTCGCCG 356 Query 781 TGTCACGACGAGGGAATCCCACGGCTGCAAAGACTGAATTCAGCTGGTCTAAGTTAAGTC 840 |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 355 TGTCACGACGTGGGAATCCCACGGCTACAAAGACTGAATTCAGCTGATCTAAGTTAAGTC 296 Query 841 CTTCTGTTGTTCGACGGAGAAGAAAGCCTCTGGATTCGAGATCTTCGTCGCTGATTGAGT 900 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 CTTCTGCTGTTCTACGGAGAAGAAAGCCTCTGGATTCGAGATCTTCGTCGCTGATTGAGT 236 Query 901 AACTTGGTGGCTTTCGTTGCATTGCAGCTGGAAACGTCGCTTGTGATGATGATTGTGTGA 960 | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 235 AGCTTGGTGGCTTTCGTTGCGTTGCAGCTGGAAACGTAGCTTGTGATGATGATTGTGTGA 176 Query 961 CTGCGTTTTGTGGGTTTAATGTGGACCTTAACCGGAGAGAAGCTGGAGGAGTGGAGATTG 1020 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 175 CTGCGTTTTGCGGGTTTAATGTGGACCTTAACCGGATAGAAGCTGGAGGAGTGGAGATTG 116 Query 1021 TGCCTCCGAGAAACATGGTATACACTATTTTTTGTTCAAGTGTTGAATTTTAGGAGCTCG 1080 |||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||| Sbjct 115 TGCCTCCGAGAAGCATGGTATACACTATTTCTTGTTAAAGTGTCGAATTTTAGGAGCTCA 56 Query 1081 ATTACATGGAATCAGACAAAAGGATGGTTTTTTAGTTTCCCTGAATTTGGATAAA 1135 ||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 55 ATTTCATGGAATCAGACAAAAGGATGGTTTTTTAGTTTCCCTGAATCTGGATAAA 1 Score = 501 bits (271), Expect = 4e-141 Identities = 314/333 (94%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 1 CTCTGAAATTGCGCTAAATGTCATAAGCTCTGGTCATCTCATAAACGTGTCAATGCGTGG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1100 CTCTGAAATTGCGCTAAATGTCATAAGCTCTGGTCATCTCATAAACGTGTCAATGCGAGG 1041 Query 61 CTTCACTTCTTCTTCGAATCATTTG--TAAATTATCCCCAAAACACTAAATCTTACCATA 118 ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| || Sbjct 1040 CTTAACTTCTTCTTCGAATCATTTGTTTGAATTATCCCCAAAACACTAAATCTTACCGTA 981 Query 119 GCTGAGAAACAACGAAGAGATCGAAGAAAGCTAAGATGGTGCTGATGACGCTAATGGATC 178 ||| | || ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 980 GCT-----A-AA-GAAGAGATCGAAGAAAGCTAAGATGGTGCTGATGATGCTAATGGATC 928 Query 179 TGATCGTCGCCGGAATCTCTCTGATGGTCGGATTAGGGTTCTTCGCTCTCATCGCTTCCA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 927 TGATCGTCGCCGGAATCTCTCTGATGGTCGGATTAGGGTTCTTCGCTCTCATCGCTTCCA 868 Query 239 TCCTCTGCTCCGTCGCCTTCTTCCACCATGCCAAAGCAGCTTCTTCTTGACCATCAAAAT 298 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 867 TCCTCTGTTCCGTTGCCTTCTTCCACCATGCCAAAGCCGCTTCTTCTTGACCATCAAAAT 808 Query 299 CAAAACCAAAACAGAGAATTGAACATGGAAGGA 331 ||||| |||||||||||| |||||||||||||| Sbjct 807 CAAAATCAAAACAGAGAACTGAACATGGAAGGA 775 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42316437870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5