BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26230.1 Length=2003 Score E Sequences producing significant alignments: (Bits) Value Ahg921636 jgi|Araly1|921636|scaffold_102917.1 1362 0.0 Ahg949386 jgi|Araly1|949386|scaffold_801273.1 351 8e-96 > Ahg921636 jgi|Araly1|921636|scaffold_102917.1 Length=1660 Score = 1362 bits (737), Expect = 0.0 Identities = 889/958 (93%), Gaps = 28/958 (3%) Strand=Plus/Plus Query 16 CCTTGCTCTTTTTAACGGCAATGGCTTTCTCACAAGCTGCTCTCTCTGCGTTGCCTCTTT 75 |||||||| |||||||||||||||| | | | || | ||||||||||||||| ||| Sbjct 1 CCTTGCTCGTTTTAACGGCAATGGC--T-T--C---CT-CACTCTCTGCGTTGCCTTTTT 51 Query 76 CTGATCGAACTTTCCGCAAAAAGCCATCTTCTTCTTCTTCATCTTCACCGAATTTCGTT- 134 |||||||||||||||| |||||| | |||| | |||| |||||||| || Sbjct 52 CTGATCGAACTTTCCGTAAAAAG-------C--CTTC-T--TCTT---CGAATTTC-TTC 95 Query 135 CTGAGAGTAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAG 194 || |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 96 CTTAGAGCAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCGCTGTCACCAAG 155 Query 195 AAGCTTCAGGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAG 254 |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct 156 AAGCTTCAGGCAGGTGCAGATATGGTCGCTAAGCTATTAGGCGTGACATTAGGTCCAAAG 215 Query 255 GGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCAATGACGGTGAA 314 ||||||||| | |||||||||||||||||||| ||||| | ||| |||||||| |||||| Sbjct 216 GGACGAAACATAGTGTTGCAGAACAAGTACGGACCTCCCAAGATCGTCAATGATGGTGAA 275 Query 315 ACTGTTCTTAAAGAGATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTG 374 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 276 ACTGTTCTTAAAGAGATTGAATTGGAGGATCCTTTAGAGAATGTTGGAGTGAAACTTGTG 335 Query 375 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTATAATT 434 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 336 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCGGGTGATGGTTCCACTACATCTATAATT 395 Query 435 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGATTTCTGCTGGAACAAATCCCATC 494 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 396 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGGTTTCTGCTGGAACAAATCCCATC 455 Query 495 CAAGTTGCCCGTGGTATTGAGAAAACCACAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 554 ||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 456 CAAGTGGCCCGTGGTATTGAGAGAACCGCAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 515 Query 555 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCGGGGAATGAC 614 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 516 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCCGGGAATGAC 575 Query 615 TACGAAGTGGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 674 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TACGAAGTTGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 635 Query 675 ACAATAGAGAAAGGAAAATACCTTGTGAACAATCTCGAGATTGTGGAAGGAATGCAGTTT 734 ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 636 ACAATAGAGAAAGGAAAATACCTAGTGAACAATCTTGAGATTGTCGAAGGAATGCAGTTT 695 Query 735 AATCGTGGCTACTTATCGCCATACTTTGTCACTGATCGAAGGAAGAGGGAAGCTGAATTC 794 |||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 696 AATCGTGGTTATTTATCGCCTTACTTTGTCACTGACCGAAGGAAGAGGGAAGCTGAATTC 755 Query 795 CATGATTGCAAGCTGCTTTTGGTAGATAAGAAAATAACAAATCCAAAAGATATGTTCAAG 854 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 756 CATGATTGCAAGCTGCTTTTGGTTGATAAGAAAATAACAAATCCAAAAGACATGTTCAAG 815 Query 855 ATATTGGATTCTGCTGTTAAAGAGGAATTTCCAGTTCTAATAGTTGCCGAAGATATTGAG 914 ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct 816 ATATTGGATTCTGCTGTTAAAGAGGCCTTTCCAGTTCTTATAGTTGGCGAAGATATTGAG 875 Query 915 CAAGACGCTCTTGCTCCTGTTATTAGGAACAAACTAAAAGGTAACCTGAAG-GTGGCA 971 |||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||| Sbjct 876 CAAGACGCTCTTGCTCCTGTTATTAGGAACCAACTAAAAGGTAATCTGA-GCGTGGCA 932 Score = 1197 bits (648), Expect = 0.0 Identities = 688/708 (97%), Gaps = 0/708 (0%) Strand=Plus/Plus Query 1167 AAAGCAGTCGACGAAAGGGTTTCGCAGATTAAAAATCTTATCGAGAACACCGAGGAGAAT 1226 ||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| Sbjct 933 AAAGCAGTCGAGGAAAGGGTTTCTCAGATCAAAAATCTTATCCAGAACACCGAGGAGAAT 992 Query 1227 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 993 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1052 Query 1287 CAGGTAGGTGCACTGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1346 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 CAGGTAGGTGCACAGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1112 Query 1347 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1172 Query 1407 TTGCGACTGGCTACAAAAGTGGACAGAATCAAAGAGACCCTTGACAACACAGAACAGAAG 1466 |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1173 TTGCAACTGGCTACAAAAGTGGACAGAATTAAAGACACCCTTGACAACACAGAACAGAAG 1232 Query 1467 ATTGGAGCTGAAATCTTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1526 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 ATTGGAGCTGAAATATTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1292 Query 1527 GCAGACACAAATGGCAATATCGTCATAGAAAAGGTCTTATCGAACAAAAACACCATGTAC 1586 |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1293 GCAGGCACAAATGGCAATATCGTCATAGAAAAGGTCTTATCCAACAAAAACGCCATGTAC 1352 Query 1587 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGTTGGCTGGTATAATTGATCCA 1646 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 1353 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGCTGGCTGGTATAATCGATCCA 1412 Query 1647 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTTCATCAGTGGCTCAAACGTTTCTGACA 1706 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 1413 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTGCATCAGTAGCTCAAACGTTTCTGACA 1472 Query 1707 TCGGATTGCGTTGTAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1766 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1473 TCGGACTGCGTTATAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1532 Query 1767 TTACCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTACCAAGATTT 1826 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1533 TTGCCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTGCCAAGATTT 1592 Query 1827 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1874 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1593 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1640 > Ahg949386 jgi|Araly1|949386|scaffold_801273.1 Length=575 Score = 351 bits (190), Expect = 8e-96 Identities = 208/217 (96%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 351 GAGAATGTTGGAGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGT 410 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 271 GAGAATGTTGGCGTGAAACTTGTGAGGCAAGCGGGTGCTAAGACTAATGACCTTGCGGGT 330 Query 411 GATGGTTCCACTACATCTATAATTCTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTG 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 GATGGTTCCACTACATCTATAATTCTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTG 390 Query 471 ATTTCTGCTGGAACAAATCCCATCCAAGTTGCCCGTGGTATTGAGAAAACCACAAAAGCT 530 |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| Sbjct 391 GTTTCTGCTGGAACAAATCCCATCCAAGTGGCCCGTGGTATTGAGAGAACCGCAAAAGCT 450 Query 531 CTTGTTTTAGAGCTCAAGTCAATGTCCAGAGAGATTG 567 |||||||||||||||| ||||||||||||| | |||| Sbjct 451 CTTGTTTTAGAGCTCAGGTCAATGTCCAGAAAAATTG 487 Score = 305 bits (165), Expect = 7e-82 Identities = 253/291 (87%), Gaps = 24/291 (8%) Strand=Plus/Plus Query 19 TGCTCTTTTTAACGGCAATGGCTTTCTCACAAGCTGCTCTCTCTGCGTTGCCTCTTTCTG 78 ||||| |||||||||||||||| | | | || ||||||||||||||||| |||||| Sbjct 5 TGCTCGTTTTAACGGCAATGGC--T-T--C---CT-CTCTCTCTGCGTTGCCTTTTTCTG 55 Query 79 ATCGAACTTTCCGCAAAAAGCCATCTTCTTCTTCTTCATCTTCACCGAATTTCGTTCTGA 138 ||||||||||||| |||||| | |||||||||| || || | ||| ||| Sbjct 56 ATCGAACTTTCCGTAAAAAG-C--CTTCTTCTTC-GAAT-TT---C----TTCCTTC--- 100 Query 139 GAGTAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAGAAGC 198 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 GAGCAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAGAAGC 160 Query 199 TTCAGGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAGGGAC 258 |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct 161 TTCAGGCAGGTGCAGATATGGTCGCTAAGCTATTAGGCGTGACATTAGGTCCAAAGGGAC 220 Query 259 GAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCAATGACG 309 ||||||| |||||||||||||||||||| ||||| | |||||||||||||| Sbjct 221 GAAACGTAGTGTTGCAGAACAAGTACGGACCTCCCAAGATTGTCAATGACG 271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75304414365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5