BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26270.1
Length=2605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472790 jgi|Araly1|472790|fgenesh2_kg.1__2744__AT1G26270.1 3845 0.0
> Ahg472790 jgi|Araly1|472790|fgenesh2_kg.1__2744__AT1G26270.1
Length=2577
Score = 3845 bits (2082), Expect = 0.0
Identities = 2437/2601 (94%), Gaps = 53/2601 (2%)
Strand=Plus/Plus
Query 1 GAGATAGGAAGAGaaaaaaaaaaCAGCTTCTTCTTCAAAGCGAGACCTATCTGAGTCGAC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGGTAGGAAGAGAAAAAAAAAACAGCTTCTTCTTCAAAGCGAGACCTATCTGAGTCGAC 60
Query 61 TCGTAACGAGTTGAtttttttttGTTTTCTTCTCTACTGGTTTCGCTTTTCGAGCTTCTC 120
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGTAACGAGTTGA-TTTCTTTTGTTTTCTTCTCTACTGGTTTCGCTTTTCGAGCTTCTC 119
Query 121 GTCTCCGTTAATCGTTAAATCTAGCTCATTGATCCGATATCCATTG-TTT-TCTCTCGCC 178
||||||||| |||| ||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 120 GTCTCCGTTGTTCGTCAAATCTAGCTCATTGATCCGATATCGATTGTTTTCTCTCTCGCC 179
Query 179 GGCGCGTCATTGTCATTCGTCGT-CGAGTTC--T-GATTGTTTTAACTATGGAAGCTCGT 234
|||||||||||||||| |||||| ||||||| | |||||||| ||||||||||||||||
Sbjct 180 GGCGCGTCATTGTCATACGTCGTCCGAGTTCTGTAGATTGTTTCAACTATGGAAGCTCGT 239
Query 235 CGTGGAGTCTAATTCATTATTGAGCTT-GAGGATTGGTTCGGTTGATGGTCTTTTCCACC 293
|||||||||||||||||||||||| || |||||||||||||| | | | | ||
Sbjct 240 CGTGGAGTCTAATTCATTATTGAG-TTCGAGGATTGGTTCGG-T--T-G-----T--ACT 287
Query 294 GTTTGAAAGAGTTCT-TCAGTTT-AACATCTGGTGTTGGATCTAGTCACCTGTATTGAAA 351
| || |||||||| | ||| ||| |||||||||| |||||| |||| | |||| | |||
Sbjct 288 GCTT-AAAGAGTTGTATCA-TTTCAACATCTGGTCTTGGATTTAGTTATCTGTCCT-AAA 344
Query 352 -GTGGGAAGAAACTAACTTGTGCAGCCATAGTCGCAAAGGCTGTGAT-T-TTTTG-TCTC 407
|||||||||||||| ||||||||||||| ||| | | || | | |||| ||||
Sbjct 345 GGTGGGAAGAAACTATCTTGTGCAGCCATCTTCG--ACTTTTTTG-TCTGATTTGATCTC 401
Query 408 CACACTCATGTCACGTAAGCTTGACAGTCCTATTAAGACACAAATGGCAGTGGCACTAGT 467
||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 402 CACACTCATGTCACGTAAGCTTGACAGTCCTGTTCAGACACAAATGGCTGTGGCACTAGT 461
Query 468 GAAGAGTCCCCTGAATGGGGAATTTCGTGAATTTAACAAGGTAGGAATGAAGACACCTGT 527
|||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 462 GAAGAGCCCCCTGAGCGGGGAATTTCGTGAATTTAACAAGGTAGGAATGAAGTCACCTGT 521
Query 528 GGGTCGTAGGCGGGTTTTTGTTCAGACAGAGACTGGTTGTGTACTGGGGTTGGAGTTGGA 587
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 522 GGGTCGTAGGCGGGTTTTTGTTCAAACGGAGACTGGTTGTGTACTGGGGTTGGAGTTGGA 581
Query 588 TCGTAGTGATAACGCGCACACTGTGAAAAGGAAGTTGCAGGTTGCTCTTAATTTCCCCAT 647
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 582 TCGTAGTGATAATGCGCACACAGTGAAAAGGAAGTTGCAGGTTGCTCTTAATTTCCCCAT 641
Query 648 TGAGGAAAGCTCGTTGACCTTTGGGGATTTGGTGCTTAAAAATGATCTTACAGCTGTTAG 707
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 642 TGAGGAAAGCTCGTTGACCTTCGGGGATTTGGTGCTTAAAAATGATCTTACAGCTGTTAG 701
Query 708 AAGTGATTCTCCTCTTCTTCTAACTCGGAACAACTTTCATAGGAGCTCATCGACTCCGTG 767
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 702 AAGTGATGCTCCTCTTCTTCTAACTCGGAACAACTTTCATAGGAGTTCATCGACTCCATG 761
Query 768 TCTTTCCCCAATGAGGGCTGACCTTCAGCAGAGAAGAGATGAGAGCAGTCCTATTGAAAT 827
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 762 TCTTTCCCCAATGAGGGCTGACCTTCAGCAGCGTAGAGATGAGAGCAGTCCTATTGAAAT 821
Query 828 TCTTGGGAACTCTGTTTCTTTCTCTTTCGTGAGGCAAATGGCGAAGGATATTACAAAAGC 887
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 822 TCTTGGGAACTCTGTTTCTTTCTCTTTTATGAGGCAAATGGCGAAGGATATTACAAAAGC 881
Query 888 AGTGAAGAAGGGCATTGATCCAGTTGCTGTTAATAGTGGGCTTGGAGGGGCCTATTACTT 947
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 882 AGTGAAGAAGGGCATTGATCCAGTTGCTGTTCATAGTGGGCTTGGAGGGGCCTATTACTT 941
Query 948 TAAGAACAGCCGTGGAGAGAGTGTTGCAATTGTTAAACCAACTGATGAGGAGCCTTATGC 1007
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 942 CAAGAACAGCCGCGGAGAGAGTGTTGCAATTGTTAAACCAACTGATGAGGAGCCTTTTGC 1001
Query 1008 TCCTAATAACCCAAAAGGTTTTGTTGGTAAGGCGCTTGGACAACCTGGGTTGAAGCGTTC 1067
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1002 TCCTAATAACCCGAAAGGTTTTGTTGGAAAGGCGCTTGGACAACCTGGGTTGAAGCGTTC 1061
Query 1068 AGTACGGGTTGGGGAAACAGGCTACAGAGAAGTTGCGGCTTATCTTCTCGACAAGGAGCA 1127
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1062 GGTGCGGGTTGGGGAAACAGGCTACAGAGAAGTTGCGGCTTATCTTCTTGACAAGGAACA 1121
Query 1128 TTTTGCAAATGTTCCTCCCACTGCTCTTGTGAAGATTACTCACTCTATCTTTAATGTCAA 1187
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TTTTGCAAATGTTCCTTCCACTGCTCTTGTGAAGATTACTCACTCTATCTTTAATGTCAA 1181
Query 1188 CGATGGAGTGAAGGCAAGCAAGCCTATGGAGAAGATGTTGGTGAGCAAGATTGCTTCCTT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CGATGGAGTGAAGGCAAGCAAGCCTATGGAGAAGATGTTGGTGAGCAAGATTGCTTCCTT 1241
Query 1248 GCAGCAGTTCATACCTCATGATTATGATGCTAGCGAGCACGGAACATCAAATTTCCCTGT 1307
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1242 GCAGCAGTTCATATCTCATGATTATGATGCTAGCGAGCACGGAACATCCAATTTCCCTGT 1301
Query 1308 TTCAGCTGTACACCGTATAGGGATTCTTGACATCAGAATCTTAAATACAGATAGGCACTC 1367
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1302 TTCAGCTGTACACCGTATAGGGATTCTTGACATCAGAATCTTAAATACAGACAGGCACTC 1361
Query 1368 AGGGAACCTTTTGGTCAAGAAACTGGATGGTGATGGTATGTTTGGCCAGGTGGAGCTAGT 1427
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TGGGAACCTTCTGGTTAGGAAACTGGATGGTGATGGTATGTTTGGCCAGGTGGAGCTAGT 1421
Query 1428 TCCAATCGATCATGGTCTTTGCTTGCCTGAAACTCTAGAGGACCCTTACTTTGAGTGGAT 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 TCCAATCGATCATGGTCTTTGCTTGCCTGAAACTCTAGAGGACCCTTACTTTGAGTGGAT 1481
Query 1488 TCATTGGCCACAGGCATCGATCCCATTCTCTGAAGATGAGCTGAAGTACATAGCAAATCT 1547
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1482 TCATTGGCCACAGGCATCGATCCCATTCTCTGAAGATGAACTGAAGTACATAGCGAATCT 1541
Query 1548 GGATCC-TTTAGGAGATTGTGAGATGCTGCGGAGGGAACTTCCAATGGTACGAGAGGCCA 1606
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1542 GGATCCCTTT-GGAGATTGTGAGATGCTGCGGAGGGAACTTCCAATGGTAAGAGAGGCCA 1600
Query 1607 GTCTCCGTGTTCTAGTTCTCTGCACAATTTTTCTCAAGGAAGCTGCTGCTAATGGCCTTT 1666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1601 GTCTCCGTGTTCTAGTTCTCTGCACAATTTTTCTCAAGGAAGCTGCTGCTAATGGCCTAT 1660
Query 1667 GTTTGGCTGAAATTGGTGAGATGATGACTAGAGAGGTTCGTCCTGGAGATGAGGAGCCGA 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 GTTTGGCTGAAATTGGTGAGATGATGACTAGAGAGGTTCGTCCTGGAGATGAGGAGCCGA 1720
Query 1727 GTGAGATTGAAGTGGTTTGTCTTGAGGCTATGAGTTTGATAGGAGAGAAAGACGCTGAGT 1786
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1721 GTGAGATTGAAGTGGTTTGTCTTGAGGCTATGAGTTTGATAGGAGAGAAGGAAGCTGAGT 1780
Query 1787 CCCCAAGATCAGACTTGGGAAATGA-T-A--T--TG---AATTCCAGTTTGATATAGATT 1837
| ||||||||||||||||||| ||| | | | || |||||||||| ||||||||||
Sbjct 1781 CACCAAGATCAGACTTGGGAAGTGAATCAAGTGATGTTGAATTCCAGTTCGATATAGATT 1840
Query 1838 GTGAGGAAGTAACTGATTGTACGAAAAAACTAGCATTACCACTCGGACTCACGTTTGGAA 1897
||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1841 GTGAGGAAGCAACTGATTGTACAAAAAAACTAGCATTCCCACTCGGACTCACTTTTGGAA 1900
Query 1898 ATGCTCGTGGTCAGTTGTCAAAGGTggaagaaacaacagaggatggggaagaagaagaag 1957
|||||||| |||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 1901 ATGCTCGTAGTCAGTTGTCAAAGGTGGAAGAAACAACAGAGCA-GGAG--GAAGAAGAAG 1957
Query 1958 aagaagacagagaggaggaagagaatgacagagctgatctagagaaAATGCCGACGATTA 2017
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1958 AAGAAGACAAAGAGGAGGAAGAGAATGACAGAGCTGATCTAGAGAAAATGCCGACAATTA 2017
Query 2018 --A-GCTTTCAATGTCTCTCAAAAGCACTCTTCTTGGTGAGAAGAGTCAGAAGTATCAGA 2074
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2018 CCAAGCTTTCAATGTCTCTCAAAAGCACTCTTCTTGGTGAGAAGAGCCAGAAGTATCAGA 2077
Query 2075 AACACCCAGGAGCAAGAGTGGAGAGCGCATATGCATCATCTGCTCACAGAAGTGCAGACG 2134
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 2078 AACACCCAGGAGCAAGAGTGGAGAGCGCATATGCATCATCTGCGCACAGGAGTGCAGATG 2137
Query 2135 AACAGATCCCATCAAGCACAAGCTTTGTGAAGCTGTCGGATATGAGCGAAGAAGAGTGGA 2194
||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct 2138 AACAGATCCCATCAAGCACAAGCTTCGTGAAGCTGTCCGATATGAGTGAAGAGGAGTGGA 2197
Query 2195 CGATTTTCCTGGAGAAATATCAAGAGCTGCTTTATCCAGCCATTGAAAAGCGCAAGTCGA 2254
||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
Sbjct 2198 CGATTTTCCTGGAGAAATATCAAGAGCTGCTTTATTCGGCAATTGAAAAGCGCAAGTCCA 2257
Query 2255 TAACTTTAGGACAGAAGCAGAGGCAGAGGCTGGGGACTTCTTGTCAGTTTTGagaagact 2314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2258 TAACTTTAGGACAGAAGCAGAGGCAGAGGCTGGGGACTTCTTGTCAGTTTTGAGAAGACT 2317
Query 2315 gaagaagaagaagaagaaTAAAAGGATCGTGTAAA-GTCGTGTTTCTAAGGGCTTTGCTT 2373
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2318 GAAGAAGAAGAAGAAGAATAAAAGGATCGTGTAAAAGTCGTGTTTCTAAGGGCTTTGCTT 2377
Query 2374 AGACTGGATTGTTGGAAACGCGTAAAGGTGAAGATA--TGAGTGGAATGGATTTAGTGTA 2431
||||||||||| | ||||| |||||||| ||||| | |||||||||||||| |||||||
Sbjct 2378 AGACTGGATTGGTCGAAACACGTAAAGGCGAAGAGAGATGAGTGGAATGGATGTAGTGTA 2437
Query 2432 AATATTCGTTGGTTACTCTCAGCTTTTAGTATGGAGGAGTCTCGAGAGATGAAGAGAAAT 2491
||||||||||||||||| |||||||||||| || ||||| |||||| |||||||||||||
Sbjct 2438 AATATTCGTTGGTTACTTTCAGCTTTTAGTGTGTAGGAGACTCGAGGGATGAAGAGAAAT 2497
Query 2492 TAGTCATTTGTTTCGTTTGTCATTTTGTTTTAACTTCTTAAAATCTTTTGTGATATAAAT 2551
||||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 2498 CAGTCATTTGTTTCTTTTGTCATTTTGTTTTAACTTCTTGAACTCTTTTGTTATATAAAT 2557
Query 2552 AACTTGTAGATTTGgaaaaaa 2572
|| |||||||| || ||||||
Sbjct 2558 AATTTGTAGATGTG-AAAAAA 2577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98234741855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5