BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26550.1 Length=737 Score E Sequences producing significant alignments: (Bits) Value Ahg335745 jgi|Araly1|335745|fgenesh1_pg.C_scaffold_1002310 721 0.0 > Ahg335745 jgi|Araly1|335745|fgenesh1_pg.C_scaffold_1002310 Length=429 Score = 721 bits (390), Expect = 0.0 Identities = 416/429 (97%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 85 ATGGGGAAGGACGCAAAAGCTGGTGGGAAGGGTAAAGGAAAGCAAGCAAGTGGTAGTGAA 144 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGGGGAAGGACGCAAAAGCTGGTGGGAAGGGTAAAGGAAAGCAAGCTAGTGGTAGTGAT 60 Query 145 GAAGCTCCCTCCAAGGGTAAAGGAAAAGCAGGAAAAGCTGCAGATGGTCTTGGGACATGC 204 ||||| ||||||||||||||||| |||||||||||||| || |||||||| ||||||||| Sbjct 61 GAAGCACCCTCCAAGGGTAAAGGCAAAGCAGGAAAAGCCGCTGATGGTCTCGGGACATGC 120 Query 205 ACTTATGTTAAAGCAAGACATGTTTTGTGCGAGAAGCAAGGAAAGATCAACGAGGCCTAC 264 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACTTATGTTAAAGCAAGACACGTTTTGTGCGAGAAGCAAGGAAAGATCAACGAGGCCTAC 180 Query 265 AAAAAGTTGCAGGATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCA 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAAAGTTGCAGGATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCA 240 Query 325 AAGATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGG 384 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 241 AAGATTGCAGCAGAGTACTCGGAGTGCCCATCAGGGAAAAAAGGAGGAGATCTTGGATGG 300 Query 385 TTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCTTTAATACACCTGTTGGA 444 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 301 TTCCCTCGTGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCTTTAACACACCTGTTGGA 360 Query 445 GTCACCAGTGCACCCTTCAAATCAACGCACGGATACCACATTATTTTATCAGAGGGAAGG 504 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 GTCACCAGTGCACCCTTCAAATCAACGCACGGATACCACATTATCTTATCAGAGGGAAGG 420 Query 505 AAGAACTGA 513 ||||||||| Sbjct 421 AAGAACTGA 429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27143516904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5