BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G26550.1

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg335745 jgi|Araly1|335745|fgenesh1_pg.C_scaffold_1002310           721    0.0  


> Ahg335745 jgi|Araly1|335745|fgenesh1_pg.C_scaffold_1002310
Length=429

 Score =  721 bits (390),  Expect = 0.0
 Identities = 416/429 (97%), Gaps = 0/429 (0%)
 Strand=Plus/Plus

Query  85   ATGGGGAAGGACGCAAAAGCTGGTGGGAAGGGTAAAGGAAAGCAAGCAAGTGGTAGTGAA  144
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  1    ATGGGGAAGGACGCAAAAGCTGGTGGGAAGGGTAAAGGAAAGCAAGCTAGTGGTAGTGAT  60

Query  145  GAAGCTCCCTCCAAGGGTAAAGGAAAAGCAGGAAAAGCTGCAGATGGTCTTGGGACATGC  204
            ||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct  61   GAAGCACCCTCCAAGGGTAAAGGCAAAGCAGGAAAAGCCGCTGATGGTCTCGGGACATGC  120

Query  205  ACTTATGTTAAAGCAAGACATGTTTTGTGCGAGAAGCAAGGAAAGATCAACGAGGCCTAC  264
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACTTATGTTAAAGCAAGACACGTTTTGTGCGAGAAGCAAGGAAAGATCAACGAGGCCTAC  180

Query  265  AAAAAGTTGCAGGATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCA  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAAAAGTTGCAGGATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCA  240

Query  325  AAGATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGG  384
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  241  AAGATTGCAGCAGAGTACTCGGAGTGCCCATCAGGGAAAAAAGGAGGAGATCTTGGATGG  300

Query  385  TTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCTTTAATACACCTGTTGGA  444
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  301  TTCCCTCGTGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCTTTAACACACCTGTTGGA  360

Query  445  GTCACCAGTGCACCCTTCAAATCAACGCACGGATACCACATTATTTTATCAGAGGGAAGG  504
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  361  GTCACCAGTGCACCCTTCAAATCAACGCACGGATACCACATTATCTTATCAGAGGGAAGG  420

Query  505  AAGAACTGA  513
            |||||||||
Sbjct  421  AAGAACTGA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27143516904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5