BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26665.2
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313324 jgi|Araly1|313324|fgenesh1_pm.C_scaffold_1002104 839 0.0
Ahg493793 jgi|Araly1|493793|fgenesh2_kg.7__3226__AT5G41910.1 586 8e-167
> Ahg313324 jgi|Araly1|313324|fgenesh1_pm.C_scaffold_1002104
Length=930
Score = 839 bits (454), Expect = 0.0
Identities = 538/576 (93%), Gaps = 16/576 (3%)
Strand=Plus/Plus
Query 31 GGAAAACCTAATTCGTCCGGAGAATCTCCACCTCACTCTCGCCAAACGCATCTCTGTTGT 90
|||||||||||||||||||||| ||||| ||||| ||||||| |||| |||||||| | |
Sbjct 357 GGAAAACCTAATTCGTCCGGAGCATCTCTACCTCTCTCTCGCAAAACCCATCTCTG-T-T 414
Query 91 AGCTTGTGATGGATCCAACACAGAACACAAGTGCAGGGATTGGT----G-GG-AGCAATG 144
|||||||||||||||||||||||| ||||||||||||||||| | || |||||||
Sbjct 415 --CTTGTGATGGATCCAACACAGAACGCAAGTGCAGGGATTGGTGGGAGTGGAAGCAATG 472
Query 145 GTACAATCAGATATCAAACCAATGATGGGACTTCAACTGTGACCGTTGCTGATGATTCAA 204
|||| || ||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 473 GTACGATTAGATATCAAACCAATGACGGGACTTCAAC--T----GTTGCTGATGATTCAA 526
Query 205 AGGAGAATCTTTCCCAAGTCATAAACTCTATTGAGAAAACTTTAGGAGTCCTTCATCAGT 264
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 527 AGGAGAATCTGAGCCAAGTCATAAACTCTATTGAGAAAACTTTGGGAGTCCTTCATCAGT 586
Query 265 TACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAACTCCATCTCCTCCAGCGCCTTA 324
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 587 TACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAGCTCCATCTCCTCCAGCGCCTTA 646
Query 325 ACTCTCTTGTGATGGAGCTAGATAACATGACTAAGTTGTCTGAGAAATGCAACATTCAAA 384
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 647 ACTCTCTTGTGATGGAGCTGGATAACATGACTAAGTTGTCTGAGAAATGCAACATTCAAG 706
Query 385 TCCCCATGGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTTTACGAAAG 444
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TCCCCATGGAAGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTTTACGAAAG 766
Query 445 ATGTTCTTAATAGCTGCATAGCTAGAAATCAAGTTACTAAGGGCAAGACTGATGCTTTTA 504
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 767 ATGTTCTTAATAGCTGCATAGCTAGAAATCAAGTTACAAAGGGCAAGACTGATGCTTTTA 826
Query 505 AGGATTTGAGAAAACATATTCTGGAGGAGCTTGAACAGAATTTCCCTGATGAAGTCGATA 564
|||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||
Sbjct 827 AGGATTTGAGAAAACATATTTTGGAGGAGCTTGAACAGACTTTTCCTGATGAAGTCGATA 886
Query 565 TGTATAGAGAAATCCGTGCTAGTTCTGCTGCTGTAA 600
|||||||||||||||||||||||||||| |||||||
Sbjct 887 TGTATAGAGAAATCCGTGCTAGTTCTGCCGCTGTAA 922
> Ahg493793 jgi|Araly1|493793|fgenesh2_kg.7__3226__AT5G41910.1
Length=646
Score = 586 bits (317), Expect = 8e-167
Identities = 428/481 (89%), Gaps = 9/481 (2%)
Strand=Plus/Plus
Query 198 GATTCAAAGGAGAATCTTTCCCAAGTCATAAACTCTATTGAGAAAACTTTAGGAGTCCTT 257
||||||||||||||||| ||||||||||||||| | | |||||||||||| | | |||
Sbjct 70 GATTCAAAGGAGAATCTGAACCAAGTCATAAACTCGAATCAGAAAACTTTAGTACTACTT 129
Query 258 CATCAGTT-ACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAACTCCATCTCCTCCA 316
||||| || | | || |||||| |||||||||| |||| ||||| || ||||||||||
Sbjct 130 CATCAATTGA-AACTCACCGTCTCTTCTTTCACTTCCGCTTCTCAGCTTGATCTCCTCCA 188
Query 317 GCGCCTTAACTCTCTTGTGATGGAGCTAGATAACATGACTAAGTTGTCTGAGAAATGCAA 376
||||| || ||||||||||||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct 189 ACGCCTCAATTCTCTTGTGATGGAGCTTGATAATATGGCTAAGTTGTCTGATAAATGCAA 248
Query 377 CATTCAAATCCCCATGGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTT 436
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 249 CATTCAAGTCCCCATGGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCAGATGAGTT 308
Query 437 TACGAAAGA-TGTTCTTAATA---GCTGCATAGCTAGAAATCAAGTTACTAAGGGCAAGA 492
||| ||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 309 TAC-AAAGAATGTTCTTAATAATAGCTGCATTGCTAGAAATCAAGTTACAAAGGGCAAGA 367
Query 493 CTGATGCTTTTAAGGATTTGAGAAAACATATTCTGGAGGAGCTTGAACAGAATTTCCCTG 552
| ||||||||||||| ||||||||||||| || |||||||||||||||||| ||| ||||
Sbjct 368 CCGATGCTTTTAAGGGTTTGAGAAAACATCTTTTGGAGGAGCTTGAACAGACTTTTCCTG 427
Query 553 ATGAAGTCGATATGTATAGAGAAATCCGTGCTAGTTCTGCTGCTGTAA-CGAAACGGTTG 611
|||||||||||| ||||||||||||||||||||||| ||| |||| || | |||||||||
Sbjct 428 ATGAAGTCGATACGTATAGAGAAATCCGTGCTAGTTATGCCGCTG-AAGCAAAACGGTTG 486
Query 612 GCGCAATCGCAAAGTGTGTTACCAAATGGGGATGCAAAGGTCAAGAATGAGCTATAAGAG 671
|| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 487 GCCCAATCGCAAAGTGTGTTACCAAATGGGGATCCTAAGGTCAAGAGTGAGCTATAAGAG 546
Query 672 C 672
|
Sbjct 547 C 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29316523173
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5