BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G26760.1 Length=1792 Score E Sequences producing significant alignments: (Bits) Value Ahg912370 jgi|Araly1|912370|Al_scaffold_0001_2624 2460 0.0 Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1 161 1e-38 > Ahg912370 jgi|Araly1|912370|Al_scaffold_0001_2624 Length=2931 Score = 2460 bits (1332), Expect = 0.0 Identities = 1540/1642 (94%), Gaps = 8/1642 (0%) Strand=Plus/Plus Query 1 CAATGAGAGGAGAGCAATTCGAGCTAGAGGAAGATAGAGACGGGCCACTGGAGCTGTTGC 60 ||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| Sbjct 1292 CAATGGGAGGAGAGCAATTCGAGCTAGAGGAAGATCGAGACGGACCATTGGAGCTGTTGC 1351 Query 61 AGAGCTTGAGATCTAAAGCAACGGAGCTTCTTCTTCGAGAAGAATGGGAAGAATCTATAA 120 ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1352 AGAGCTTGAGATCCAAAGCGACGGAGCTTCTTCTTCGGGAAGAATGGGAAGAATCTATAA 1411 Query 121 AAGTTTACACGGAGTTCATCGATCTCTCTCGGAGGCAAGTCTCAAGTACTGGTGGATCCG 180 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1412 AAGTTTACACGGAGTTCATCGATCTCTCTCGGAGGCAAGTCTCAAGAAATGGTGGATCCG 1471 Query 181 ACCCGGATCCGGATTCGATTGCTAAGCTCCGGAAATCTCTCTGTTTGGCTCTATGTAATC 240 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1472 ACCCGGATCCGGATTCGATTGCTAAGCTCCGGAGATCTCTCTGCTTGGCTCTATGTAATC 1531 Query 241 GAGCTGAGGCAAGAGCTAGGCTACGAGATTTTTTGGAAGCAATGAGGGATTGTGATCAAG 300 |||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1532 GAGCTGAGGCGCGAGCCAGGCTACGAGATTTCTTGGAAGCAATGAGGGATTGTGATCAAG 1591 Query 301 CACTTGAAATCGAGAAGACTCATTTCAAGACTCTTCTTTGTAAAGGTAAAGTTTTGCTTG 360 |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1592 CACTTGAAGTCGAGAAGACCCATTTCAAGACTCTTCTTTGTAAAGGTAAAGTTTTGCTTG 1651 Query 361 GATTGAGCAAATACTCTTTGGCTTTGGAATGTTTTAAAACGGCTTTGCTCGATCCACAAG 420 |||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||| Sbjct 1652 GATTGAGCAAATACTCATTGGCTTTGGAATGCTTTAAAACGGCTCTGCTCGATCCTCAAG 1711 Query 421 CGAGTGATAACTTGGAGACTGTTACTGTGTATATAGAGAAATGTAAGAAGCTTGAGTTTC 480 ||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||| Sbjct 1712 CGAGTGATAACTTCGAGACTGTTACTGGGTACATGGAGAAATGTAAGAAGCTTGAGTTTC 1771 Query 481 AGGCAAAGACTGGAGCTTTTGATTTGTCTGATTGGATCTTAAGTGAGTTTCGTGGGAAAT 540 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1772 AGGCAAAGACTGGAGCTTTTGATTTGTCTGATTGGATCTTAAGTGGGTTTCGTGGGAGAT 1831 Query 541 GTCCTGAGCTTGCTGAGTTTATTGGGTCGATTGAGATTAAGAAATCTGAGCTTAGTGGGC 600 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1832 GTCCCGAGCTTGCTGAGTTTATTGGGTCGATTGAGATTAAGAAATCTGAGTTTAGTGGGC 1891 Query 601 GTGGATTGTTTGCTACGAAGAACATTGTTG-CTGGTACTTTGGTTTTAGTTACAAAGGCG 659 |||||||||||||||||||||| ||||||| | || |||| | ||||||||||||||||| Sbjct 1892 GTGGATTGTTTGCTACGAAGAATATTGTTGGCGGG-ACTTCGATTTTAGTTACAAAGGCG 1950 Query 660 GTTGCGATTGAGAGAGGGATCTTAGGAAATGGAGAGTGTGGGGAAAAAGCGCAGTTGATC 719 |||||||||||||||||||||||||| |||||||||| ||| || |||||||||||||| Sbjct 1951 GTTGCGATTGAGAGAGGGATCTTAGGTAATGGAGAGTCTGGCGAGAAAGCGCAGTTGATA 2010 Query 720 ATGTGGAAGAACTTCGTTGAAGAGGTTACTGAATCCGTGAGAAAATGCGGTAGGACTCGT 779 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 2011 ATGTGGAAGAATTTCGTTGAAGAGGTTACTGAATCCGTGAGGAAATGCGGTAGGACACGT 2070 Query 780 CGAGTTGTCTCCGCTTTGTCCACTGGACAAGGTGAAGATAGTCTGGAGATTCCTGAGATA 839 ||||||||||||||||||||||||||||||| ||||| | |||||||||||| || ||| Sbjct 2071 CGAGTTGTCTCCGCTTTGTCCACTGGACAAGACGAAGACAATCTGGAGATTCCAGATATA 2130 Query 840 GCTCTGTTTAGACCTGATGAAGCATTTGAAACTTGTGGTGACTGGAAACAGAGTTTGGAT 899 ||||| ||||| |||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 2131 GCTCTCTTTAGGCCTGATGAAGCATTTGAAACTTATGATGACTCGAAACAGAGTTTGGAT 2190 Query 900 ACAGAGAAGTTGTTGAGTATCTTGGATGTGAATTCTCTGGTGGAAGATGCGGTTTCAGGT 959 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 2191 ACGGAGAAGTTATTGAGTATCTTGGATGTGAATTCTCTGGTGGAAGATGCTGTTTCAGCT 2250 Query 960 AAAGTTATGGGGAAGAACAAAGAGTATTACGGTGTAGGGCTATGGACTTTAGCTTCATTC 1019 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2251 AAAGTTATGGGGAAGAACAAAGAGTATTACGGTGTAGGGCTATGGACTCTAGCTTCATTC 2310 Query 1020 ATCAACCACTCGTGTATCCCTAACGCAAGACGTCTTCACGTTGGAGACTACGTGATTGTT 1079 || ||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct 2311 ATTAACCATTCGTGTATCCCAAACGCAAGACGTCTCCATGTTGGAGACTACGTGATTGTT 2370 Query 1080 CATGCCTCGAGAGATATCAAAACAGGGGAAGAGATTAGCTTT-GCTTACTTTGATGTGCT 1138 |||||||| ||||| |||||| | ||||| ||||| | |||| |||||||| || ||||| Sbjct 2371 CATGCCTCCAGAGACATCAAAGCCGGGGAGGAGATCA-CTTTTGCTTACTTCGACGTGCT 2429 Query 1139 TTCTCCATTGGAAAAACGGAAAGAGATGGCTGAGTCATGGGGGTTTTGTTGCGGATGCAG 1198 ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 2430 TTCTCCATTGGAAAAGCGGAAAGAGATGGCTGAGTCATGGGGATTTCGTTGCGGATGCAG 2489 Query 1199 TAGATGCAAGTTTGAGAGTGTCTTGTATGCTACCAACCAGGAGGTTAGAGAGTTTGAAAT 1258 ||||||||||||||||||| |||||| || ||||||||| ||| | |||||| ||||||| Sbjct 2490 TAGATGCAAGTTTGAGAGTCTCTTGTGTGTTACCAACCAAGAGATAAGAGAGCTTGAAAT 2549 Query 1259 GGGTTTAGAGAGAGGCGTAGATGCAGGGAA-CGCGGTTTATATGGTGGAGGAAGGGATGA 1317 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 2550 GGGTTTAGAGAGAGGCGTAGATGC-GGGAAACGCGGTTTATATGGTGGAGGAAGGGATGA 2608 Query 1318 AGAGATGGAAGGTAAAAGGGAAAGATAAAGGGTTGCTGAGAGCATCTTATTGGGGAGTTT 1377 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 2609 AGAGATGGAAGGTAAAAGGGAAGGATAAAGGGTTATTGAGAGCATCTTATTGGGGAATTT 2668 Query 1378 ATGATGAGATTTATAACTCAGAGAGACTTATGAAAAGGTGGGGAAGGAAGATACCAACAA 1437 ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| Sbjct 2669 ATGATGAGATTTATAACTCGGAGAGATTTATGAAGAGGTGGGGAAGGAAGATACCAACAA 2728 Query 1438 TGGAAGTTGTGGTGGATAGTGTCTCTGATGTTGTTGGAAGTGATGAGAGATTGATGAAGA 1497 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2729 TGGAAGTTGTGGTGGATAGTGTGTCTGATGTTGTTGGAAGTGATGAGAGATTGATGAAGA 2788 Query 1498 TGGCTGTGGAAGGGATGATGAAGAAGCATGGAGGTTTCAGTAACATTGTGGAGATGGAGA 1557 || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | Sbjct 2789 TGCCTGTGGAAGGGATGATGAAGAAGAATGGAGGTTGCAGTAACATTGTGGAGATGGATA 2848 Query 1558 AAATCAT-GAAGCTAGGGAAGGGGGTTTATGGCAAAGTGGTATCGAAAAAGAAGGCAATG 1616 |||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2849 AAAT-ATTGAAGCTAGGGAAGGGTGTTTATGGCAAAGTGGTATCGAAAAAGAAGGCAATG 2907 Query 1617 AAGACTCTTCTTGGCATAGAGT 1638 ||||||||||||||| |||||| Sbjct 2908 AAGACTCTTCTTGGCCTAGAGT 2929 > Ahg472731 jgi|Araly1|472731|fgenesh2_kg.1__2685__AT1G26750.1 Length=807 Score = 161 bits (87), Expect = 1e-38 Identities = 117/130 (90%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 1670 GTAGGATCAATAGAGAGAGTAACCATTTTGGTTTTCTGTAATTCCTTGCCTCATGGAAGG 1729 |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 807 GTAGGATCCATAGAGATAATAACCATTTTGGTTTTCTGTAATTCCTTGCCTCATGGAAGA 748 Query 1730 AAACATCCAATGATATTAT-T-A------CAAAGACATTCAAATGGAAATAACACTTGTT 1781 ||||||||||||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 747 AAACATCCAATGATATTATATTATTATTACAAAGACACTCAAATGGAAATAACACTTGTT 688 Query 1782 TTGTTGCAAA 1791 |||||||||| Sbjct 687 TTGTTGCAAA 678 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67267372670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5