BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26790.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313311 jgi|Araly1|313311|fgenesh1_pm.C_scaffold_1002091 1807 0.0
Ahg951020 jgi|Araly1|951020|scaffold_802907.1 145 9e-34
Ahg490815 jgi|Araly1|490815|fgenesh2_kg.7__248__AT4G38000.1 71.3 2e-11
> Ahg313311 jgi|Araly1|313311|fgenesh1_pm.C_scaffold_1002091
Length=1197
Score = 1807 bits (978), Expect = 0.0
Identities = 1133/1205 (94%), Gaps = 22/1205 (2%)
Strand=Plus/Plus
Query 1 ATGTGGCTCTCTCATCTCTTCATGTCCCTCTCTAAGCTGACGTGTAATTTCTCCATTTTC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTGGCTCTCTCATCTCTTCATGTCCCTCTCTCAGCTGACGTGTAATTTCTCCATTTTC 60
Query 61 TCTGTCTTTATGGCTTGTGGCTC---TATTGGTATGTCTCAAGTTAGAGATACTCCGGTT 117
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTCTTTATGGCTTGTGGCTCTATTATTGGTATGTCTCAAGTTAGAGATACTCCGGTT 120
Query 118 AAATTGTTTGGCTGGACAATTACACCGGTTTCTCATGATCCATActcttcttcgtccca- 176
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 121 AAGTTGTTTGGCTGGACAATTACACCGGTTTCTCATGATCCACACTCTTCTTCGT-CCAC 179
Query 177 tgttcttcctgattcttcctcgtcttcctcgtcttcttctctatcacttcgACCACACAT 236
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 180 TGTTCTTCCTGATTCTTCCTCGTCTTCCTCATCTTCTTCTCCATCACTTCGACCACACAT 239
Query 237 GATGAATAACCAATCTGTTACTGACAATACAAGTCTTAAGCTGTCATCTAATCTTAACAA 296
||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 240 GATGAATAACCAATCTGCTACTAACAATACAAGTCTTAAGATGTCATCTAATCTTAACAA 299
Query 297 CGAGTCAAAAGAAACATCTGAGAACAGTGATGACCAACACAGCGAGATCACAACAATTAC 356
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 TGAGTCGAAAGAAACATCTGAGAACAGCGATGACCAACACAGCGAGATTACAACAATTAC 359
Query 357 ATCGGAAGAAGAGAAAACAACTGAACTGAAGAAACCAGACAAGATTCTTCCATGTCCGAG 416
||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 ATC-G--GAAGAGAAAACAACTGAACTGAAGAAACCAGACAAGATTCTTCCGTGTCCGAG 416
Query 417 ATGCAACAGCGCAGACACCAAATTCTGTTACTACAACAACTACAACGTTAACCAGCCACG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATGCAACAGCGCAGACACCAAATTCTGTTACTACAACAACTACAACGTTAACCAGCCACG 476
Query 477 TCACTTCTGTAGAAAATGCCAGAGGTATTGGACCGCTGGTGGATCCATGAGGATCGTCCC 536
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 477 TCACTTCTGTAGAAAATGCCAGAGGTATTGGACTGCTGGTGGATCCATGAGGACCGTCCC 536
Query 537 GGTTGGCTCAGGCCGTCGCAAGAACAAGGGATGGGTTTCTTCAGACCAGTACCTGCACAT 596
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGTAGGCTCAGGCCGTCGCAAGAACAAGGGATGGGTTTCTTCAGACCAGTACCTGCACAT 596
Query 597 CACTTCCGAGGATACTGACAATTACAATAGCTCCTCAACAAAGATTCTAAGCTTCGAGTC 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 CACTTCCGAGGATACTGACAATTACAATAGCTCCTCAACGAAGATTCTAAGCTTCGAGTC 656
Query 657 TTCGGACTCTTTGGTAACTGAGAGGC-CTAAGCATCAATCAAACGAA-GTGAAGATAAAC 714
|||| |||||||| | ||||||| | ||||||||||||||| | || ||||||| ||||
Sbjct 657 TTCGAACTCTTTGCTTACTGAGAA-CACTAAGCATCAATCAAGC-AATGTGAAGAAAAAC 714
Query 715 G-CTGAACCTGTTTCACAAGAACCCAACAACTTCCAAGGGTTACTTCCTCCCCAAGCATC 773
| | || ||||||||||||||| |||||||||||||||||| |||||||| |||| ||
Sbjct 715 GGC-GATTCTGTTTCACAAGAACTCAACAACTTCCAAGGGTTTCTTCCTCCGCAAGGATA 773
Query 774 CCCTGTTTCGCCTCCTTGGCCTTACCAATACCCTCCAAACCCTAGTTTCTACCACATGCC 833
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 774 CCCTGTTTCGCCCCCTTGGCCTTGCCAATACCCTCCAAACCCTAGTTTCTACCACATGCC 833
Query 834 CGTCTACTGGGGCTGCGCGATACCGGTTTGGTCTACCCTCGACACTTCTACATGTCTTGG 893
||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 834 CGTCTACTGGGGCTGTGCGGTACCGGTTTGGTCTACCCTAGGCACTTCTACATGTCTTGG 893
Query 894 GAAAAGGACAAGAGACGAA----A--CTTCTCATGAAACTGTTAAAGAGAGTAAAAATGC 947
||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||
Sbjct 894 GAAAAGGACAAGAGACGAAGCTGAAGCTTCGCATGAAACTGTTAAAGAGAGCAAAAATGC 953
Query 948 TTTTGAGAGAACAAGCTTGCTTTTGGAATCTCAGAGCATCAAAAATGAAACAAGTATGGC 1007
||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||| |
Sbjct 954 TTTTGTGAGAACAAGCTTGGTTTTGGAATCTCAGAGTATCAAAAATGAAACAATTATGAC 1013
Query 1008 TACAAATAACCATGTGTGGTATCCAGTACCGATGACCCGCGAGAAGACACAAG-AATTCA 1066
|||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||
Sbjct 1014 TACAAATAACCATGTGTGGTATCCGGTACCGATGACCCGCGAGAAGACAGA-GCAATTCA 1072
Query 1067 GCTTTTTCAGTAATGGAGCTGAAACAAAGAGCAGCAACAACAGATTCGTCCCTGAAACGT 1126
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 1073 GCTTTTTCAGTAATGGAGCTGAAACAAAGAGCAACAACCAGAGATTCGTCCCTGAAACGT 1132
Query 1127 ATCTTAACCTGCAAGCAAACCCTGCAGCCATGGCAAGATCTATGAACTTCAGAGAGAGCA 1186
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATCTTAAGCTGCAAGCAAACCCTGCAGCCATGGCAAGATCTATGAACTTCAGAGAGAGCA 1192
Query 1187 TATAA 1191
|||||
Sbjct 1193 TATAA 1197
> Ahg951020 jgi|Araly1|951020|scaffold_802907.1
Length=901
Score = 145 bits (78), Expect = 9e-34
Identities = 153/187 (82%), Gaps = 14/187 (7%)
Strand=Plus/Plus
Query 385 AAGAAACCAGA-CAAGATTCTTCCATGTCCGAGATGCAACAGC--GCAGACACCAAATTC 441
||||||||| | |||||||||||||||||| |||||||||||| | ||||| ||||||
Sbjct 129 AAGAAACCA-ACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACA--AAATTC 185
Query 442 TGTTACTACAACAACTACAACGTTAACCAGCCACGTCACTTCTGTAGAAAA-TGCCAGAG 500
||||||||||||||||||||||| ||||| || || || || |||| || || |||||
Sbjct 186 TGTTACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTA-AAGCCTGTCAGAG 244
Query 501 GTATTGGACCGCTGGTGG-ATCCATGAGGA-TCGT-CCCGGTTGGCTCAGGCCGTCGCAA 557
||||||||| ||||||| | ||||||| | | || ||| | || |||| || |||||
Sbjct 245 ATATTGGACCTCTGGTGGGA-CCATGAGAAGT-GTTCCCA-TCGGAGCAGGACGACGCAA 301
Query 558 GAACAAG 564
|||||||
Sbjct 302 GAACAAG 308
> Ahg490815 jgi|Araly1|490815|fgenesh2_kg.7__248__AT4G38000.1
Length=899
Score = 71.3 bits (38), Expect = 2e-11
Identities = 67/80 (84%), Gaps = 6/80 (8%)
Strand=Plus/Plus
Query 409 TGTCCGAGATG-CA-ACAGCGCAGACACCAAATTCTGTTACTACAACAACTACAACGTTA 466
||||||||||| | ||| | | |||||||||||||||||||||||||||||| | ||
Sbjct 154 TGTCCGAGATGTGATTCAGTG-A-ACACCAAATTCTGTTACTACAACAACTACAGC-TTG 210
Query 467 AC-CAGCCACGTCACTTCTG 485
| ||||||||||||| |||
Sbjct 211 TCTCAGCCACGTCACTACTG 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5