BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G26830.1
Length=2572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472710 jgi|Araly1|472710|fgenesh2_kg.1__2664__AT1G26830.1 4085 0.0
Ahg476100 jgi|Araly1|476100|fgenesh2_kg.2__1230__AT1G69670.1 1230 0.0
Ahg926358 jgi|Araly1|926358|scaffold_201919.1 377 2e-103
> Ahg472710 jgi|Araly1|472710|fgenesh2_kg.1__2664__AT1G26830.1
Length=2555
Score = 4085 bits (2212), Expect = 0.0
Identities = 2469/2586 (95%), Gaps = 45/2586 (2%)
Strand=Plus/Plus
Query 1 ACCTTCGAAATCTATCTTCTCCGATACCTCTCTATCTATA--TC-TCTT------CGACG 51
|||||||||||||||||||||||||| |||||||||||| || |||| |||||
Sbjct 1 ACCTTCGAAATCTATCTTCTCCGATA--TCTCTATCTATATCTCTTCTTACACGCCGACG 58
Query 52 CTGCAAATTAGCCTTAAGCTTCTTTCTCCTTTAAACTTTTCGATTATTATTCCATTTCCT 111
||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 59 CTGCAAA-TATCCTTAAGCTTCTTTCTCCTTTCAACTTTTCGATTATTATTCCATTTCCT 117
Query 112 -ATCTTTTTGTTTCCCCCAAATCTTTTCA-CGGAAGCAAAGAATACAATTCCAAACCCTA 169
| |||||| |||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 118 AACCTTTTT-TTTCCCCCAAATCTATT-ATCGGAAGCAAAGAATACAATTCCAAACCCTA 175
Query 170 ATCCCGATCATCCGTCTTTCCTCTCCGGTTTCAAAATATGAGTAATCAGAAGAAGAGGAA 229
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AT-CCGATCATCCGTCTTTCCTCTCCGGTTTCAAAATATGAGTAATCAGAAGAAGAGGAA 234
Query 230 TTTTCAGATAGAGGCGTTTAAGCATCGAGTCGTTGTGGATCCCAAATACGCTGATAAAAC 289
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 235 TTTTCAGATAGAGGCGTTTAAGCATCGCGTCGTTGTAGATCCCAAATACGCTGATAAAAC 294
Query 290 TTGGCAGATTCTTGAGCGTGCGATCCATCAGATTTACAATCAAGATGCTAGCGGTCTCAG 349
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 TTGGCAGATTCTTGAGCGTGCGATCCATCAGATTTATAATCAAGATGCTAGCGGTCTCAG 354
Query 350 TTTCGAAGAACTTTACAGAAATGCGTACAACATGGTCCTGCACAAGTTTGGTGAGAAGCT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTTCGAAGAACTTTACAGAAATGCGTACAACATGGTCCTGCACAAGTTTGGTGAGAAGCT 414
Query 410 ATATACTGGGTTTATTGCTACTATGACTTCTCATCTCAAAGAAAAATCCAAGCTTATCGA 469
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 TTATACTGGGTTTATTGCTACTATGACTTCTCATCTCAAAGAAAAGTCCAAGCTTATCGA 474
Query 470 GGCAGCTCAGGGAGGGTCGTTTCTAGAAGAGCTTAATAAGAAATGGAATGAGCACAACAA 529
||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 475 GGCAGCTCAAGGAGGGTCATTCCTTGAAGAGCTTAATAAGAAATGGAATGAGCACAACAA 534
Query 530 AGCGTTAGAGATGATTCGAGACATTCTCATGTATATGGATAGGACTTATATTGAGAGCAC 589
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 535 AGCGTTAGAGATGATTCGAGACATTCTCATGTATATGGATAGGACTTACATTGAGAGCAC 594
Query 590 CAAAAAGACTCATGTTCATCCGATGGGGCTTAACTTGTGGAGGGATAATGTTGTGCATTT 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CAAAAAGACTCATGTTCATCCGATGGGGCTTAACTTGTGGAGGGATAATGTTGTGCATTT 654
Query 650 CACTAAGATACATACAAGGCTTCTAAACACTCTTCTTGATCTAGTGCAGAAGGAACGGA- 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CACTAAGATACATACAAGGCTTCTAAACACTCTTCTTGATCTAGTGCAGAAGGAACGGAC 714
Query 709 TAGGTGAAGTTATTGATAGGGGGTTGATGAGGAATGTCATTAAGATGTTTATGGATTTGG 768
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 715 T-GGTGAAGTTATTGACAGGGGGTTGATGAGGAATGTCATTAAGATGTTTATGGACTTGG 773
Query 769 GTGAATCTGTGTATCAGGAGGATTTTGAGAAGCCGTTTTTGGATGCGTCTTCTGAGTTTT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GTGAATCTGTGTATCAGGAGGATTTTGAGAAGCCGTTTTTGGATGCGTCTTCTGAGTTTT 833
Query 829 ATAAGGTTGAGTCTCAGGAGTTTATTGAATCTTGTGATTGTGGGGACTATCTGAAGAAAT 888
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 834 ATAAGGTTGAGTCTCAGGAGTTTATTGAATCTTGTGATTGTGGGGATTACCTAAAGAAAG 893
Query 889 CAGAGAAACGCCTTACTGAAGAGATAGAGAGGGTAGCGCACTACTTAGATGCCAAGAGCG 948
||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 894 CAGAGAAACGCCTAACTGAAGAAATAGAGAGGGTAGCACACTACTTGGATGCCAAGAGCG 953
Query 949 AAGAGAAGATTACTAGTGTGGTTGAGAAAGAGATGATTGCCAACCACATGCAGAGACTGG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AAGAGAAGATTACTAGTGTGGTTGAGAAAGAGATGATTGCCAACCACATGCAGAGACTGG 1013
Query 1009 TTCACATGGAGAACTCAGGTCTGGTTAATATGCTTCTGAATGACAAGTATGAGGATTTGG 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 TTCACATGGAGAACTCAGGTCTGGTTAATATGCTTCTGAATGACAAGTATGATGATTTGG 1073
Query 1069 GTAGAATGTACAACTTGTTTCGCAGGGTTACTAATGGTCTTGTTACTGTCAGAGACGTTA 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GTAGAATGTACAACTTGTTTCGCAGGGTTACTAATGGTCTTGTTACTGTCAGAGACGTTA 1133
Query 1129 TGACTTCGCATCTTAGGGAGATGGGAAAACAACTGGTTACTGATCCGGAAAAGTCAAAGG 1188
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGACTTCTCATCTTAGGGAGATGGGAAAACAACTGGTTACTGATCCGGAAAAGTCAAAGG 1193
Query 1189 ATCCGGTGGAATTTGTACAACGTCTATTGGATGAGCGGGATAAATATGACAAAATCATCA 1248
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 ATCCAGTGGAATTTGTACAGCGTCTATTGGATGAGCGGGATAAATATGACAAAATCATCA 1253
Query 1249 ACACCGCATTTGGCAATGATAAAACCTTTCAGAATGCCCTGAATTCTTCATTCGAGTATT 1308
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1254 GCACCGCATTTGGCAATGATAAAACCTTTCAGAATGCGCTGAATTCTTCATTTGAGTATT 1313
Query 1309 TCATCAACTTGAATGCTCGTTCTCCTGAGTTTATCTCCCTGTTTGTTGATGACAAGCTAC 1368
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1314 TCATCAACTTGAATGCTCGTTCTCCTGAGTTCATCTCACTGTTTGTTGATGACAAGCTAC 1373
Query 1369 GGAAAGGACTTAAGGGTATCACCGATGTGGATGTTGAGGTTATCCTTGATAAAGTGATGA 1428
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 1374 GGAAAGGACTTAAGGGTATCGCCGATGTGGATGTGGAGGTTATCCTTGATAAAGTTATGA 1433
Query 1429 TGCTGTTCCGTTATTTACAAGAGAAAGATGTCTTTGAGAAGTACTACAAGCAGCATTTGG 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TGCTGTTCCGTTATTTACAAGAGAAAGATGTCTTTGAGAAGTACTACAAGCAGCATTTGG 1493
Query 1489 CTAAAAGGCTTCTCTCAGGCAAAACTGTGTCAGATGACGCAGAAAGGAGTTTAATAGTGA 1548
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1494 CTAAAAGGCTTCTCTCAGGCAAAACTGTGTCAGATGAAGCAGAGAGGAGTTTAATAGTGA 1553
Query 1549 AACTAAAGACAGAATGTGGCTATCAGTTCACTTCAAAATTGGAAGGCATGTTCACTGACA 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AACTAAAGACAGAATGTGGCTATCAGTTCACTTCAAAATTGGAAGGCATGTTCACTGACA 1613
Query 1609 TGAAGACTTCAGAGGACACAATGCGTGGGTTTTATGGCAGTCACCCCGAGCTTTCAGAAG 1668
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1614 TGAAAACTTCAGAGGACACAATGCGCGGGTTTTATGGCAGTCACCCCGAGCTTTCAGAAG 1673
Query 1669 GACCTACACTTATTGTTCAGGTACTTACAACTGGTTCTTGGCCAACACAGCCTGCAGTAC 1728
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GACCAACACTTATTGTTCAGGTACTTACAACTGGTTCTTGGCCAACACAGCCTGCAGTAC 1733
Query 1729 CTTGTAATCTCCCAGCTGAAGTTTCAGTTCTCTGTGAGAAGTTCCGTTCTTACTACCTTG 1788
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1734 CTTGTAATCTCCCAGCTGAAGTTTCAGTTCTCTGTGAGAAGTTCCGTTCCTACTACCTTG 1793
Query 1789 GGACACATACCGGTAGAAGATTGTCCTGGCAAACAAACATGGGCACAGCAGATATCAAAG 1848
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GGACCCACACGGGTAGAAGATTGTCCTGGCAAACAAACATGGGCACAGCAGATATCAAAG 1853
Query 1849 CCATCTTTGGAAAGGGTCAGAAACATGAACTGAACGTGTCGACTTTCCAGATGTGTGTTC 1908
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1854 CCATCTTTGGAAAGGGTCAGAAACATGAACTGAATGTGTCGACTTTCCAGATGTGTGTTC 1913
Query 1909 TCATGTTGTTCAACAATTCTGATCGACTCAGCTACAAAGAGATCGAACAGGCTACAGAAA 1968
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1914 TCATGTTGTTCAACAACTCTGATCGACTCAGCTACAAAGAAATCGAACAGGCTACTGAAA 1973
Query 1969 TCCCGGCAGCAGATCTTAAACGCTGTTTGCAGTCGCTAGCTTGTGTAAAGGGCAAAAACG 2028
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1974 TCCCGGCAGCAGATCTTAAACGCTGTTTGCAGTCGCTAGCGTGTGTAAAGGGCAAAAACG 2033
Query 2029 TGATAAAGAAAGAACCCATGAGCAAAGACATAGGAGAGGAGGATTTGTTCGTTGTGAACG 2088
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2034 TGATAAAGAAAGAACCCATGAGCAAAGACATAGGAGAGGAGGATTCGTTTGTTGTGAACG 2093
Query 2089 ACAAGTTCACTAGCAAGTTTTACAAAGTGAAGATCGGAACTGTGGTTGCCCAAAAGGAAA 2148
|||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| || |
Sbjct 2094 ACAAATTCACCAGCAAGTTTTACAAAGTGAAGATCGGAACCGTGGTAGCCCAAAAAGAGA 2153
Query 2149 CAGAACCGGAGAAGCAAGAGACGAGACAGAGAGTGGAGGAAGACAGAAAACCTCAGATTG 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 CAGAACCGGAGAAGCAAGAGACGAGACAGAGAGTGGAGGAAGACAGAAAACCTCAGATTG 2213
Query 2209 AAGCAGCCATCGTAAGGATCATGAAGTCCAGGAAAATACTAGACCACAACAACATAATCG 2268
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2214 AAGCAGCCATTGTTAGGATCATGAAGTCCAGAAAAATACTAGACCACAACAACATAATCG 2273
Query 2269 CCGAGGTGACGAAACAGTTGCAGCCACGGTTCCTAGCTAATCCCACGGAGATAAAGAAGA 2328
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2274 CAGAGGTGACGAAACAGTTGCAGCCACGGTTCCTGGCTAATCCCACAGAGATAAAGAAGA 2333
Query 2329 GAATCGAGTCGCTCATTGAACGAGATTTCTTGGAAAGGGATAGTACAGACCGGAAACTTT 2388
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2334 GAATCGAGTCGCTCATTGAACGAGATTTCTTGGAAAGAGATAGTACAGACCGGAAACTTT 2393
Query 2389 ACCGCTATCTAGCCTAAATAAGTTGAATACCACAACCCaaaaaaaaaaGGCTTTACTCTG 2448
||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||
Sbjct 2394 ACCGCTATCTAGCCTAAATAAGTTGAATACCACAACC-AAAAAAAAA-GACTTCACTCTC 2451
Query 2449 TTTCTTTCTTTGCTTTATTTCCTTATGTTTGATGTAAAATCTTTTGAACTGTACGGTAGT 2508
||| ||| ||| |||| | || ||||| || |||||||||||||||
Sbjct 2452 TTT-TTT-TTT-CTTTG---C-TT-TGTTT----------CT---GAACTGTACGGTAGT 2490
Query 2509 CGGTAAGAACGAACCAACACAGCGTCACTACCGGTTTAATCGAATAT--ACATTTGTTTC 2566
|||||||||||||||||||| || ||||||||| ||||||||||||| || ||||||||
Sbjct 2491 CGGTAAGAACGAACCAACACTGCATCACTACCG-TTTAATCGAATATTTACTTTTGTTTC 2549
Query 2567 CTTTTC 2572
||||||
Sbjct 2550 CTTTTC 2555
> Ahg476100 jgi|Araly1|476100|fgenesh2_kg.2__1230__AT1G69670.1
Length=2049
Score = 1230 bits (666), Expect = 0.0
Identities = 1186/1435 (83%), Gaps = 44/1435 (3%)
Strand=Plus/Plus
Query 267 GATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCCATCAGATTTAC 326
||||| |||||||| |||||||||||| ||||||| || | |||||| ||| ||||||||
Sbjct 34 GATCCAAAATACGCCGATAAAACTTGGAAGATTCTGGAACATGCGATTCATGAGATTTAC 93
Query 327 AATCA-AGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGTACAACATGGT 385
||||| | | ||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 94 AATCACA-ACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGGT 152
Query 386 CCTGCACAAGTTTGGTGAGAAGCTATATACTGGGTTTATTGCTACTATGAC-TTCTCATC 444
|| || |||| |||||| ||||| |||||||| || || | |||||||| || |||||
Sbjct 153 TCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATT-TCATC 211
Query 445 TCAAAGAAAAATCCAAGCT-TATCGAGGCAGCTCAGGGAGGGTCG-TTTC-TAGAAGAGC 501
||||||| | || ||| | ||| || | |||||| ||| ||| | |||| ||||| ||
Sbjct 212 TCAAAGAGATATGTAAG-TCTATTGAAGAAGCTCATGGA-GGT-GCTTTCTTAGAATTGC 268
Query 502 TTAATAAGAAATGGAATGAGCACAACAAAGCGTTAGAGATGATTCGAGACATTCTCATGT 561
|| ||| |||||||||| | |||||||||||| | || | | | | | | |
Sbjct 269 TTGATAGGAAATGGAATCATCACAACAAAGCG-T-----TG---C-A-A-A---TGA--T 311
Query 562 ATATGGATAGGACTTATATTGAGAGCACCAA-AAAGACTCATGTTCATCCGATGGGGCTT 620
||||||| ||||||| || || || || ||| | ||||||||| | | || |||
Sbjct 312 -TATGGATCGGACTTACGTTTCTAGTACTAAGAAA-AGGCATGTTCATGAGCTTGGACTT 369
Query 621 -AACTTGTGGAGGGATAATGTTGTGCATTTC-ACTAAGATACATACAAGGCTTCTAAACA 678
| ||| |||||||||||||||||| | ||| | |||||| || || |||||| | || |
Sbjct 370 CATCTT-TGGAGGGATAATGTTGTGTA-TTCGAGTAAGATTCAGACTAGGCTTTTGAATA 427
Query 679 CTCTTCTTGATCTAGTGCAGAAGGAACGGATAGGTGAAGTTATTGATAGGGGGTTGATGA 738
| ||||||||| |||| | |||||||||| ||||||||||| |||||| ||||||||
Sbjct 428 CGCTTCTTGATTTAGTTTATAAGGAACGGACCGGTGAAGTTATAGATAGGTTGTTGATGA 487
Query 739 GGAATGTCATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGAGGATTTTGAGA 798
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 488 GGAATGTGATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGATGATTTCGAGA 547
Query 799 AGCCGTTTTTGGATGCGTCTTCTGAGTTTTATAAGGTTGAGTCTCAGGAGTTTATTGAAT 858
||||||||||||| || ||| |||||||||| ||||||||||| |||| ||||||||| |
Sbjct 548 AGCCGTTTTTGGAAGCTTCTGCTGAGTTTTACAAGGTTGAGTCACAGGGGTTTATTGAGT 607
Query 859 CTTGTGATTGTGGGGACTATCTGAAGAAATCAGAGAAACGCCTTACTG-AAGA-GATAGA 916
||||||||||||| || ||| |||||||| | ||||||| | || || |||| | | ||
Sbjct 608 CTTGTGATTGTGGTGATTATTTGAAGAAAGCGGAGAAAC-CTTTTGTGGAAGAAG-TCGA 665
Query 917 GAGGGTAGCGCACTACTTAGATGCCAAGAGCGAAGAGAAGATTACTAGTGTGGTTGAGAA 976
||||| || ||||| || |||||||||||||||| ||||||||||||||||||||| ||
Sbjct 666 AAGGGTTGCTCACTATTTGGATGCCAAGAGCGAAGCGAAGATTACTAGTGTGGTTGA-AA 724
Query 977 -AGAGATGATTGCCAACCACATGCAGAGACTGGTTCACATGGAGAACTCAGGTCTGGTTA 1035
||| |||||||| ||||| |||||||||| ||||| |||||||| |||||| ||||||
Sbjct 725 GAGAAATGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTA 784
Query 1036 ATATGCTTCTGAATGACAAGTATGAGGATTTGGGTAGAATGTACAACTTGTTTCGCAGGG 1095
|||||||| ||||||| |||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 785 ATATGCTTTTGAATGATAAGTATGAGGATATGGGTAGAATGTACAGTTTGTTCCGCAGGG 844
Query 1096 TTACTAATGGTCTTGTTACTGTCAGAGACGTTATGACTTCGCATCTTAGGGAGATGGGAA 1155
|| | ||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||
Sbjct 845 TTGCCAATGGTCTTGTTACTATTAGAGATGTTATGACTTTGCATCTTAGGGAGATGGGAA 904
Query 1156 AACAACTGGTTACTGATCCGGA-AAAGTCAAAGGATCCGGTGGAATTTGTACAACGTCTA 1214
|||| |||||||| ||||| || ||| ||||||| ||| || |||||||| || ||||||
Sbjct 905 AACAGCTGGTTACCGATCCAGAGAAA-TCAAAGGTTCCCGTTGAATTTGTGCAGCGTCTA 963
Query 1215 TTGGATGAGCGGGATAAATATGACAAAATCATCAACACCGCATTTGGCAATGATAAAACC 1274
|| |||||||||||||| ||||||||||| ||||||| |||||| ||| ||||| ||
Sbjct 964 TTAGATGAGCGGGATAAGTATGACAAAATTATCAACATGGCATTTAACAACGATAAGACG 1023
Query 1275 TTTCAGAATGCCCTGAATTCTTCATTCGAGTATTTCATCAACTTGAATGCTCGTTCTCCT 1334
|| |||||||| ||||||||||| || ||||||||| |||||||||| | |||||||||
Sbjct 1024 TTCCAGAATGCGCTGAATTCTTCGTTTGAGTATTTCCTCAACTTGAACACCCGTTCTCCT 1083
Query 1335 GAGTTTATCTCCCTGTTTGTTGATGACAAGCTACGGAAAGGACTTAAGGGTATCACCGAT 1394
|||||||||||| ||||||||||||| || ||||| |||||||| || ||| | ||
Sbjct 1084 GAGTTTATCTCCTTGTTTGTTGATGATAAACTACGAAAAGGACTAAAAGGTGTGGGGGAG 1143
Query 1395 GTGGATGTTGAGGTTATCCTTGATAAAGTGATGATGCTGTTCCGTTATTTACAAGAGAAA 1454
| |||||| || |||| ||||||| ||||||||| |||| || |||||||| ||||||
Sbjct 1144 GAGGATGTGGATCTTATTCTTGATACGGTGATGATGTTGTTTCGCTATTTACAGGAGAAA 1203
Query 1455 GATGTCTTTGAGAAGTACTACAAGCAGCATTTGGCTAAAAGGCTTCTCTCAGGCAAAACT 1514
|| || |||||||| |||||||| || | | |||| ||||||||| | || || ||||||
Sbjct 1204 GACGTTTTTGAGAAATACTACAAACAACGTCTGGCAAAAAGGCTTTTATCTGGAAAAACT 1263
Query 1515 GTGTCAGATGACGCAGAAAGGAGTTTAATAGTGAAACTAAAGACAGAATGTGGCTATCAG 1574
||||| ||||| || || |||| | | ||||| ||||| |||||||||||||| ||||||
Sbjct 1264 GTGTCGGATGATGCTGAGAGGAATCTGATAGTTAAACTGAAGACAGAATGTGGGTATCAG 1323
Query 1575 TTCACTTCAAAATTGGAAGGCATGTTCACTGACATGAAGACTTCAGAGGACACAATGCGT 1634
|||||||| ||| ||||||| |||||||||||||||||||| ||| | || ||| ||| |
Sbjct 1324 TTCACTTCGAAACTGGAAGGTATGTTCACTGACATGAAGACCTCACACGATACACTGC-T 1382
Query 1635 GGG-TTTTATGGCAGTCACCCCGAGCTTTCAGAAGGACCTACACTTATTGTTCAG 1688
|| |||||| || || |||||||||||||||||||| |||||| ||||||||
Sbjct 1383 AGGATTTTATAATAGCCATCCCGAGCTTTCAGAAGGACCGACACTTGTTGTTCAG 1437
> Ahg926358 jgi|Araly1|926358|scaffold_201919.1
Length=352
Score = 377 bits (204), Expect = 2e-103
Identities = 215/220 (98%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 196 GGTTTCAAAATATGAGTAATCAGAAGAAGAGGAATTTTCAGATAGAGGCGTTTAAGCATC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 GGTTTCAAAATATGAGTAATCAGAAGAAGAGGAATTTTCAGATAGAGGCGTTTAAGCATC 69
Query 256 GAGTCGTTGTGGATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCC 315
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GCGTCGTTGTAGATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCC 129
Query 316 ATCAGATTTACAATCAAGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGT 375
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATCAGATTTATAATCAAGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGT 189
Query 376 ACAACATGGTCCTGCACAAGTTTGGTGAGAA-GCTATATA 414
||||||||||||||||||||||||||||||| | ||||||
Sbjct 190 ACAACATGGTCCTGCACAAGTTTGGTGAGAAAGTTATATA 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96977763770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5