BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27150.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472688 jgi|Araly1|472688|fgenesh2_kg.1__2642__AT1G27150.1 2305 0.0
Ahg905709 jgi|Araly1|905709|Al_scaffold_0003_2837 774 0.0
Ahg905723 jgi|Araly1|905723|Al_scaffold_0003_2851 267 3e-70
Ahg895533 jgi|Araly1|895533|Al_scaffold_0006_3529 254 2e-66
Ahg925072 jgi|Araly1|925072|scaffold_200633.1 159 5e-38
Ahg920240 jgi|Araly1|920240|scaffold_101521.1 95.3 1e-18
> Ahg472688 jgi|Araly1|472688|fgenesh2_kg.1__2642__AT1G27150.1
Length=1498
Score = 2305 bits (1248), Expect = 0.0
Identities = 1384/1451 (95%), Gaps = 3/1451 (0%)
Strand=Plus/Plus
Query 91 CCTGTAGGAAGCGGCAAACTTGCAGCTCTGTTCTCTTG-AAATGGAGAAAACAGTGAGAT 149
||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| ||||||
Sbjct 49 CCTGTAGGAAGCGGCTAACTTTCAGCTCTGTTTTCTTGAAAATGGAGAAAACACTGAGAT 108
Query 150 GTGTTCGGTGGGGTTATGAGGTTAATACCTCTTCTGATGCTTGCATCGACGCAATTAACT 209
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 109 GTGTTCGGTGGGGTTATGAGGTTAATACCTCTTCTGATGATTGCATCGACGCAATTAACT 168
Query 210 CCTATTTTCAACAGGTTCTTAGTTATGGGAGGAAGAGGAAAGTGATTCTAGAAGCACCAC 269
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CTTATTTTCAACAGGTTCTTAGTTATGGGAGGAAGAGGAAAGTGATTCTAGAAGCACCAC 228
Query 270 TCTACGATAAAGATTGTGTTTTGGGCAGCATTTTAGCTGCTCATTTCCTTTCTTCATCTG 329
|||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 229 TCTACGATAATGATTGTGTTTTGGGCAACATTTTAGCTGCTCATTACCTTTCTTCATCTG 288
Query 330 ATCCTTCTAGAGCTAATTCCTATGTTGAAGCTGCGGCATCTAATCTCGAACAATCTACAC 389
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 289 ATCCTTCCAGAGCTAATTCCTACGTTGAAGCTGCGGCCTCTAATCTCGAACAATCTACAC 348
Query 390 CTTATGAGAAAGCGGTTTACGAGGCTGTTACTTACCTAATCTCTGAGGATAGGGATGACG 449
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 349 CTTATGAGAAAGCGGTTTACGAGGCTGTTACTTACCTGATCTCCGAGGACAGGGATGACG 408
Query 450 ACTTGGCTTTTGAAATGCACACCAAGCTACTTAAAAGATTCCCAAAGGA-CTTGGCTTCT 508
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||
Sbjct 409 ACTTGGCTTTTGAAATGCACACCAAGCTACTTAATAGATTCCCAAAGGACCTT-GCCTCT 467
Query 509 TTGAAAAGAGCGCAGCTTTTAAGTTTCTACATGGGTCAACCTGATCCCTTCTTGGGTCTT 568
||||| ||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 468 TTGAAGAGAGCACAGCTTTTATGTTTCTACATGGGTCAACCTGAGCCCTTTTTGGGTCTT 527
Query 569 GTTCAGCAGGTTCTACCTGCGAATCAAGAAGAAAGTTATATTCATGGTTTACTTGCGTTC 628
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 528 GTTCAGCAGGTTCTACCTGCGAATCAAGAAGAAAGTTATATTCATGGTATACTTGCGTTC 587
Query 629 CCATTGTTAGAACTTGGTCGAATGGAAGAAGCTGCGGCAGCTTCCAGAAAAGGCTATGAG 688
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 588 CCATTGTTAGAACTTGGTCGAATGGAAGAAGCTGCGGCAGCTTCCAAAAAAGGCTATGAG 647
Query 689 ATAAACAAAGAAGACGCTTGGGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGT 748
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ATAAACAAAGAAGACTCCTGGGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGT 707
Query 749 CGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCACTCGCAGGAACTTGGCCCTCTTGCTCA 808
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 708 CGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCGCTCGCAGGATCTTGGCCTTCTTGCTCA 767
Query 809 TCCTTCATGTATACACACAATTGGTGGCATGTTGCTCTCTGTTACTTAGAAGGAGGGTCC 868
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 768 TCCTTCATGTATACACACAACTGGTGGCATGTTGCTCTTTGTTACTTAGAAGGAGGGTCA 827
Query 869 CCAATGAGTAAAGTAGAGGAGATTTATGATCATCACATCTGGAAAGAATTGGAGAAAGAC 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CCAATGAGTAAAGTAGAGGAGATTTATGATCATCACATCTGGAAAGAATTGGAGAAAGAC 887
Query 929 GATGCTGTTCCTCCTGAAGTTTATCTCAATGCATTGGGCTTGTTGATACGTTTAGATGTA 988
|| ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct 888 GACGCTGTTCCTCCTGAAGTTTATCTCAATGCGCTGGGATTGTTGCTACGTTTAGATGTA 947
Query 989 AGAGATGCTCTTGATGGTTTTGAAGACCGTCTCAAAAACCTTGCAGTTCGTTTAACTAAT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AGAGATGCTCTTGATGGTTTTGAAGACCGTCTCAAAAACCTTGCAGTTCGTTTAACTAAT 1007
Query 1049 CAGGCAAACTGGTATTTGGAGTGGCACCTTGATATATTGATAGTTTGGGCACTAGCAAAG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1008 CAGGCAAACTGGTATTTGGAGTGGCACCTTGATATATTGATAGTTTGGGCATTAGCAAAG 1067
Query 1109 GTTGGAGAGACTTCAAGAGCTCATGAATTACTTGAGGGCCTTAAGTTCCGATTATCAAAG 1168
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 1068 GTTGGAGAGACTTCAAGAGCTCATGAATTACTTGAGGGTCTTAAGTCCCGATTATCAAGG 1127
Query 1169 AAGAACAAGAAGAAGCAACAAGTGATGCAGAAAGGGATTCAGCTTGGGGAAGCTGTGTAT 1228
| ||| || || || ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1128 ATGAATAAAAAAAAACAACAAGTGATGCAGAAAGGGATTCAGCTCGGGGAAGCTGTGTTT 1187
Query 1229 GAATACGCAAGGGGTAACTACGAAAAGGCTCTAGAACTACTGGGTTCAGAGTTCAACGCC 1288
|||| ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 1188 GAATTCGCAAGGGGTAACTACGAAAAGGCTTTAGAACTATTCGGTTCAGAGTTCAACGCC 1247
Query 1289 ATTGGTTACAAGATCGTTGGGGCATCAGACGAACAAATAGATGTTTTCAACGAAATGTGG 1348
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1248 ATTGGTTACAAGATCGTCGGGGCATCAGATGAACAGATAGATGTTTTCAACGAAATGTGG 1307
Query 1349 TGCCAGCTGCTGCTAAAGACAGGCCAATCCTCCACGGCCAAAGAAGTAATCAGAGAGAGG 1408
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1308 TGCCAGCTGCTGCTAAAGACAGGCCAATCCTCCACTGCCAAAGAAGTGATCAGAGAGAGG 1367
Query 1409 ATTAAGGCCAGAGATGGTATTCCTTTCATGTGGCGTTTGCTGGAGAAAAGTTACTCCATG 1468
|| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1368 ATAAAGATCAGAGATGGTGTTCCTTTCATGTGGCGTTTGCTGGAGAAGAGTTACTCCATG 1427
Query 1469 GAAGGCAATGCAGAGGCTGAGAGTAGTGCACGAGAGAGAGCTAAGAAACTTGAATCTTGT 1528
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1428 GAAGGCAATGCAGAGGCTGAGAGTAGTGCAGGAGAGAGAGCTAAGAAACTAGAATCTTGT 1487
Query 1529 TATTTCTAACT 1539
|||||||||||
Sbjct 1488 TATTTCTAACT 1498
> Ahg905709 jgi|Araly1|905709|Al_scaffold_0003_2837
Length=1533
Score = 774 bits (419), Expect = 0.0
Identities = 476/504 (94%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 222 AGGTTCTTAGTTATGGGAGGAAGAGGAAAGTGATTCTAGAAGCACCACTCTACGATAAAG 281
|||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 707 AGGTTCTTAGTTGTGGGAGGAAGAGAAAAGTGATTCTAGAAGCACCACTCTACAATAAAG 766
Query 282 ATTGTGTTTTGGGCAGCATTTTAGCTGCTCATTTCCTTTCTTCATCTGATCCTTCTAGAG 341
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 767 ATTGTGTTTTGGGCAACATTTTAGCTGCTCATTTCCTTTCTTCATCTGATCCTTCCAGAG 826
Query 342 CTAATTCCTATGTTGAAGCTGCGGCATCTAATCTCGAACAATCTACACCTTATGAGAAAG 401
|||||||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 827 CTAATTCCTACGTTGAAACTGCGGCATCCAATCTTGAACAATGTACACCTTATGAGAAAG 886
Query 402 CGGTTTACGAGGCTGTTACTTACCTAATCTCTGAGGATAGGGATGACGACTTGGCTTTTG 461
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 887 CGGTTTACGAGGCTCTTACATACCTAATCTCTGAGGACAGGGATGACGACTTGGCTTTTG 946
Query 462 AAATGCACACCAAGCTACTTAAAAGATTCCCAAAGGACTTGGCTTCTTTGAAAAGAGCGC 521
|| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct 947 AATTGCACACCAAGCTACTTAATAGATTCCCAAAGGATTTGGCCTCTTTGAAAAGGGCAC 1006
Query 522 AGCTTTTAAGTTTCTACATGGGTCAACCTGATCCCTTCTTGGGTCTTGTTCAGCAGGTTC 581
|||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1007 AGCTTTTATGTTTCTACATGGGTCAACCGGATCCCTTTTTGGGTCTTGTTCAGCAGGTTC 1066
Query 582 TACCTGCGAATCAAGAAGAAAGTTATATTCATGGTTTACTTGCGTTCCCATTGTTAGAAC 641
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1067 TACCTGCGAATCAAGAAGAAAGTTATATTCATGGTATACTTGCGTTCCCATTGTTAGAAC 1126
Query 642 TTGGTCGAATGGAAGAAGCTGCGGCAGCTTCCAGAAAAGGCTATGAGATAAACAAAGAAG 701
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1127 TTGGTCGAATGGAAGAAGCTGTGGCAGCTTCCAAAAAAGGCTATGAGATAAACAAAGAAG 1186
Query 702 ACGCTTGGGCACATCACTGT-TTG 724
| || ||||||||||||||| |||
Sbjct 1187 AGGCCTGGGCACATCACTGTGTTG 1210
Score = 350 bits (189), Expect = 3e-95
Identities = 234/255 (92%), Gaps = 5/255 (2%)
Strand=Plus/Plus
Query 722 TTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCA 781
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 1264 TTGTGTCATGTTCTTCAACATGAGTGTCGGTTTAAAGAAGCAGTGGAGTTCGTGGAACCA 1323
Query 782 CTCGCAGGAA-CTTGGCCCTCTTGCTCATCCTTCATGTATACACACAATTGGTGGCATGT 840
||| || ||| ||||||| |||||||| | ||| | |||||||||||||||||||||||
Sbjct 1324 CTCACA-GAATCTTGGCCATCTTGCTC-T--TTCTTCTATACACACAATTGGTGGCATGT 1379
Query 841 TGCTCTCTGTTACTTAGAAGGAGGGTCCCCAATGAGTAAAGTAGAGGAGATTTATGATCA 900
|||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1380 TGCTCTTTGTTACTTGGAAGGAGGATCACCAATGAGTAAAGTAGAGGAGATTTATGATCA 1439
Query 901 TCACATCTGGAAAGAATTGGAGAAAGACGATGCTGTTCCTCCTGAAGTTTATCTCAATGC 960
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1440 TCACATTTGGAAAGAATTGGAGAAAGACGACGCTGTTCCTCCTGAAGTTTATCTGAATGC 1499
Query 961 ATTGGGCTTGTTGAT 975
|||||||||||||
Sbjct 1500 GCTGGGCTTGTTGAT 1514
> Ahg905723 jgi|Araly1|905723|Al_scaffold_0003_2851
Length=195
Score = 267 bits (144), Expect = 3e-70
Identities = 178/195 (91%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1343 ATGTGGTGCCAGCTGCTGCTAAAGACAGGCCAATCCTCCACGGCCAAAGAAGTAATCAGA 1402
||||||||||| ||||||| ||||||||| |||| |||||| || |||||||| ||||||
Sbjct 1 ATGTGGTGCCAACTGCTGCCAAAGACAGGTCAATTCTCCACTGCTAAAGAAGTGATCAGA 60
Query 1403 GAGAGGATTAAGGCCAGAGATGGTATTCCTTTCATGTGGCGTTTGCTGGAGAAAAGTTAC 1462
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAGAGGATAAAGGTCAGGGATGGTATTCCTTTCATGTGGCGTTTGCTGGAGAAGAGTTAC 120
Query 1463 TCCATGGAAGGCAATGCAGAGGCTGAGAGTAGTGCACGAGAGAGAGCTAAGAAACTTGAA 1522
||||||||||||| ||||||||||||||||||| || |||||| |||||||||||| |||
Sbjct 121 TCCATGGAAGGCACTGCAGAGGCTGAGAGTAGTACAGGAGAGACAGCTAAGAAACTGGAA 180
Query 1523 TCTTGTTATTTCTAA 1537
||||||||| |||||
Sbjct 181 TCTTGTTATATCTAA 195
> Ahg895533 jgi|Araly1|895533|Al_scaffold_0006_3529
Length=228
Score = 254 bits (137), Expect = 2e-66
Identities = 159/169 (94%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 650 ATGGAAGAAGCTGCGGCAGCTTCCAG-AAAAGGCTATGAGATAAACAAAGAAGACGCTTG 708
|||||||||||||| | ||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGAAGAAGCTGCAGTAGCTTCC-GAAAAAGGCTATGAGATAAACAAAGAAGACGCCTG 59
Query 709 GGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGA 119
Query 769 GTTCATGGAAGCACTCGCAGGAA-CTTGGCCCTCTTGCTCATCCTTCAT 816
||||||||||||||||||| || ||||||| || ||||||||||||||
Sbjct 120 GTTCATGGAAGCACTCGCAA-AATCTTGGCCTTCCTGCTCATCCTTCAT 167
> Ahg925072 jgi|Araly1|925072|scaffold_200633.1
Length=205
Score = 159 bits (86), Expect = 5e-38
Identities = 95/99 (96%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 722 TTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCA 146
Query 782 CTCGCAGGAA-CTTGGCCCTCTTGCTCATCCTTCATGTA 819
||||||| || | ||||| ||||||||||||||||||||
Sbjct 147 CTCGCAG-AATCGTGGCCTTCTTGCTCATCCTTCATGTA 184
> Ahg920240 jgi|Araly1|920240|scaffold_101521.1
Length=344
Score = 95.3 bits (51), Expect = 1e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 727 TCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCACT 783
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 212 TCAGGTTCTTCAACATGAATGTCAGTTTAAAGAAGCAGTGGAGTTCATGGAAGCACT 268
Score = 52.8 bits (28), Expect = 8e-06
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 722 TTGTGTCATGTTCTTCAACATGAATGTC-GGT 752
|||||||||||||||||||||||||||| |||
Sbjct 290 TTGTGTCATGTTCTTCAACATGAATGTCAGGT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5