BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27200.1 Length=2202 Score E Sequences producing significant alignments: (Bits) Value Ahg921504 jgi|Araly1|921504|scaffold_102785.1 2789 0.0 > Ahg921504 jgi|Araly1|921504|scaffold_102785.1 Length=1770 Score = 2789 bits (1510), Expect = 0.0 Identities = 1690/1776 (95%), Gaps = 15/1776 (1%) Strand=Plus/Plus Query 193 GTTTCAATTTTTCTT---GAAGATGACGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 249 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 GTTTCAATTTTTCTTGAAGAAGATGATGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 60 Query 250 AAACAAACAACAAGTAAAAGTACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTTTTG 309 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 61 AAACAAACAACAAGTAAAAGGACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTGCTG 120 Query 310 TTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAATCTCCACACTCTCTGTTCG 369 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 CTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAATCTCTACACTCTCTGTTCG 180 Query 370 TTCCGATTCTCTGAGACCGTCTCTTCGTGTTCCTACTCTCTCCGTTTTATCATCATCCAT 429 ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 181 TTCTGATTCTCTGAGACCGTCTCTTCGTGTTCCTGCTCTCTCTGTTTTATCATCATCCAT 240 Query 430 GGATTCGTTTCACCGTGGTAGATTCCCTCCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 489 ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 241 GGATTCGTTTCACGGTGGTAGATTCCTTGCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 300 Query 490 TGACCATTTATTGCTGATTCTTTCGCACGGAATTGGGAAAGGTGaaaaaaaCCTAGTTTG 549 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 301 CGACCATTTATTGCTGATTCTTTCGCACGGAATTAGGAGAGGTGAAAAAAACCTAGTTTG 360 Query 550 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 420 Query 610 CGATGAGTTTAGGTCGATTGTTCGATGTCCTAATGCTCCTTTGAACTATTCTTCATCTGT 669 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 CGATGAGTTTAGATCGATTGTTCGATGCCCTAATGCTCCTTTGAACTATTCTTCATCTGT 480 Query 670 TGATTTGCAATTCCGTGGAGATTTGGTGAAGAAGAAGATGAA-GA-AA-CAGA---GCCG 723 ||| |||||||| |||||||||||||||||||||| || ||| || || |||| |||| Sbjct 481 TGAGTTGCAATTTCGTGGAGATTTGGTGAAGAAGATGAAGAAGGAGAAGCAGAGCCGCCG 540 Query 724 TCGTGTTCATAATTGGGAAAAGGTTGGTTATGAGGCGGTGATTGACGGCGACACGGTGGT 783 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 541 TCGTGTTCATAATTGGGAAAAAGTTGGTTACGAGGCGGTGATTGACGGCGACACGGTGGT 600 Query 784 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 660 Query 844 GTGTCAATTTGAGATTGAGAATTCGGAGGAGAAAGAGGTGACTCAAGCTATTGCTGCTGC 903 |||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||| || Sbjct 661 ATGTCAATTTGAGATTGGGGATTTGGAGGAGAAAGAGGTGACTCAAGCTGTTGCTGCAGC 720 Query 904 GCAAGAAGTTGTGAGGTGTGGTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 963 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 721 GCAAGAAGTTGTGAGGTGTGTTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 780 Query 964 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACCCCTGCTCTGCCTTCGGT 1023 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 781 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACGCCTGCTCTGCCTTCCGT 840 Query 1024 TGCGAGAATCTACGGTTCTGATTCGATTGAGAAGAAGGAGAAGAAGAGTGGAGTTAAGCA 1083 |||||||||||||||||||||||||||| || | ||||||||||||| |||||||| Sbjct 841 TGCGAGAATCTACGGTTCTGATTCGATT---CAG-A--AGAAGAAGAGTGGGGTTAAGCA 894 Query 1084 TGAGCTTTGTGTTTGTACAATGTTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 1143 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 895 TGAGCTTTGTGTTTGTACAATGCTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 954 Query 1144 GTATCACTCGTGGCTCGGTGTCGAACGTTGGTTTATATATGATAACAACAGCGATGATGG 1203 |||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 955 GTATCATTCGTGGCTTGGTGTTGAACGTTGGTTTATATATGATAACAATAGCGATGATGC 1014 Query 1204 TATACAAGAGGAGATTGAGTTGCTTAGTTCGGAGAATTACAATGTGAGTCGACATGTTTG 1263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1015 TATACAAGAGGAGATTGAGTTGCTTAGTTTGGAGAATTACAATGTGAGTCGACATGTTTG 1074 Query 1264 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCGAAAGAAGA 1323 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1075 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCAAAAGAAGA 1134 Query 1324 ATGCAATTGGGTTGGATTCTTCGATGTCGACGAGTTCTACTACTTCCCTACGCATCGCTC 1383 ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1135 ATGTAATTGGGTTGGATTCTTTGATGTTGACGAGTTCTACTACTTCCCTACGCATCGCTC 1194 Query 1384 TCAAGGCTTACCGAGCAAAAACGCTTTGAAGTCGCTTGTATCGAACTACACTTCTTGGGA 1443 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1195 TCAAGGCTTACCGAGCAAAGACGCTTTGAAATCGCTTGTATCGAACTACACTTCTTGGGA 1254 Query 1444 TTTGGTTGGAGAGATCAGAACGGACTGTCATAGCTACGGTCCATCCGGTCTGACCTCGGT 1503 |||||||||||||||| ||||||| |||||||| || ||||| |||||||| |||||||| Sbjct 1255 TTTGGTTGGAGAGATCCGAACGGATTGTCATAGTTATGGTCCGTCCGGTCTAACCTCGGT 1314 Query 1504 TCCATCACAAGGCGTGACCGTAGGTTACACTTGTAGACAAGCGAACCCCGAGAGACACAA 1563 |||||| ||||||||||| || || ||||||||||||||||||||||| |||||||| || Sbjct 1315 TCCATCTCAAGGCGTGACGGTTGGGTACACTTGTAGACAAGCGAACCCTGAGAGACATAA 1374 Query 1564 GTCGATAATCCGCCCTGAGTTGCTCACAAGCTCATTGCTCAATGAAGTACATCATTTTCA 1623 ||||||| |||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1375 GTCGATAGTCCGACCTGAATTGCTCACAAGCTCATTGCTCAACGAAGTTCATCATTTTCA 1434 Query 1624 GTTGAAAGAAGGAGTGGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1683 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 GTTGAAAGAAGGAGTCGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1494 Query 1684 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1554 Query 1744 TGTTGACTGGCAAGAGAATCAGAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1803 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1555 TGTGGACTGGCAAGAGAATCAAAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1614 Query 1804 AGAGGCAATCGAGCCGCCGGATTGGAAACGACGGTTCTGTGAAGTGTGGGACACTGGATT 1863 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1615 AGAGGCAATCGAGCCGCCGGATTGGAAACGTCGGTTCTGTGAAGTGTGGGATACTGGATT 1674 Query 1864 GAAGGATTTGGTTATGTCGAATTTTGCTGATCAAGTGACTGGTTATCTGCCGTGGCAGAG 1923 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1675 GAAGGATTTGGTTTTGTCGAATTTTGCTGATCAAGTGACTGGTTATTTGCCGTGGCAGAG 1734 Query 1924 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1959 |||||||||||||||||||||||||||||||||||| Sbjct 1735 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1770 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82884373120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5