BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27300.1 Length=944 Score E Sequences producing significant alignments: (Bits) Value Ahg472926 jgi|Araly1|472926|fgenesh2_kg.1__2880__AT1G27300.1 1018 0.0 > Ahg472926 jgi|Araly1|472926|fgenesh2_kg.1__2880__AT1G27300.1 Length=767 Score = 1018 bits (551), Expect = 0.0 Identities = 720/795 (91%), Gaps = 37/795 (5%) Strand=Plus/Plus Query 12 CTCAAAAATGGTAGAGGTGCCGTGCCGTCAATAGATGTCACGTGTCCTGAC-TTGCCTTC 70 |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 1 CTCAAAAATGGTGGAGGTGCCGTGCCGTCAATTGATGTCACGTGTCCTGACAATGCATTC 60 Query 71 TCAATACAAACAAAAATACTCTCTACCTaaaaaaaCACAATAAAC-AACA-AACGCATCT 128 ||||||||||| |||||||||||||||||||||| ||||||||| |||| ||| ||||| Sbjct 61 TCAATACAAAC--AAATACTCTCTACCTAAAAAAA-ACAATAAACAAACAGAACACATCT 117 Query 129 TTGGAGCGGCGGTGAGATTAGAGAAGAAGGGTTTGTGAAATGGAGTCCAGTGAGGATGTG 188 |||||||| ||||||| || ||| ||||||||||||||||||||||| |||||||||||| Sbjct 118 TTGGAGCGTCGGTGAGGTTGGAGGAGAAGGGTTTGTGAAATGGAGTCGAGTGAGGATGTG 177 Query 189 GAGAATCTGAGTAGAGCTATTGAGAAGCTTCTTCA-TGAGAAGAGGAAGAGAGAAGCTTC 247 |||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||| Sbjct 178 GAGAATCTGAGTAGAGCTATCGAGAAACTTCTT-ACTGAGAAGAGGAAGAGAGAAGCTTC 236 Query 248 TGGTGACGCCTTCATTGAAGACG-CTGATGATCAGCTTTTCCTCTCTAGCCTTATCTCTC 306 ||||||||| ||||||||||||| | |||||||||||||| |||||||| |||||||||| Sbjct 237 TGGTGACGCTTTCATTGAAGACGAC-GATGATCAGCTTTTGCTCTCTAGGCTTATCTCTC 295 Query 307 AGTTGGAATCACCAAACCCCAAGGGGAAAGAAGATGTCATAACCGGagaagaagaagaaa 366 |||||||||||||||| |||| || || || | | | | || | | | || | Sbjct 296 AGTTGGAATCACCAAAGTCCAA--GG-AA-AA-A-G-C---A--GGTG-TG-ATAA-CCA 340 Query 367 aagaagaagaaTCTGCAGATTCTTCACCATCCAAAGGAAAAAGCGAGGGCCAGAGACAAT 426 ||||||||||| | | | ||||||||||||||||||||| |||||||||||||||||| Sbjct 341 AAGAAGAAGAA---G-A-A-TCTTCACCATCCAAAGGAAAACGCGAGGGCCAGAGACAAT 394 Query 427 TGGAAGAAAGTATAGAAGAAATAGCTAAAGACATCAAGAAGGTGAAGAAGCAGAACAAAA 486 ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| || Sbjct 395 TGGAAGAGAGTATAGAAGAATTAGCTAAAGACATCAAGAAGGTGAAGAAACAGAACACAA 454 Query 487 TAACCCATGTACTTCTCTCGGCTACGATCATCCTGACATTGGTTTGGCAGCTCTCTGAGT 546 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 455 TAACCCATGTACTTCTCTCGGCTGTGATCATCCTGACATTGACTTGGCAGCTCTCTGAGT 514 Query 547 ACTCCATGATTTTCATGTTGAAAGATAGAATAAGCCACCCAGTCAGATCCATCGGAGGTA 606 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 ACTCGATGATTTTCATGTTGAAAGATAGAATAAGCCACCCAGTCAGATCCATCGGAGGTA 574 Query 607 TGCTTAATGGAATGTTCAAAGGTAAGTTACGTCCAATCAAGAACCAACTTGCGGGGACTT 666 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 TGCTTAATGGGATGTTCAAAGGTAAGTTACGTCCAATCAAGAACCAACTTGCGGGGACTT 634 Query 667 CCAACTCCAATGACCAAAACAACCATGGGAATGGATCACACACTGGACCTCAACTTCAAG 726 ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| Sbjct 635 CCAACTCCAATGACCAAAACAACCATGGGAATGGAACACAAATTGGACCTCAACTTCAAG 694 Query 727 TGCCCGAGCTGTTGCGAGAATTCGGTTTC---GACGATGAA-GAATGATAGCTTCCCTTT 782 |||||||| |||||||||||||||||||| ||||||||| || ||||| ||| ||||| Sbjct 695 TGCCCGAGTTGTTGCGAGAATTCGGTTTCAACGACGATGAATGA-TGATA-CTTTCCTTT 752 Query 783 GTGACTCAATAATAC 797 ||||||||||||||| Sbjct 753 GTGACTCAATAATAC 767 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35034960723 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5