BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27310.1 Length=774 Score E Sequences producing significant alignments: (Bits) Value Ahg921765 jgi|Araly1|921765|scaffold_103046.1 669 0.0 Ahg472998 jgi|Araly1|472998|fgenesh2_kg.1__2952__AT1G27970.1 267 1e-70 > Ahg921765 jgi|Araly1|921765|scaffold_103046.1 Length=412 Score = 669 bits (362), Expect = 0.0 Identities = 379/387 (98%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 95 ACG-AAGAAAGAGATGGATCCAGACGCTGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 153 ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 11 ACGAAAG-AAGAGATGGATCCAGACGCAGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 69 Query 154 CACCTTCGATGCAAATCGTCCAGGGTTGGTTTCTCTATACCAAGAAGGATCCATGTTGAC 213 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 70 CACCTTCGATGCAAATCGTCCAGGTTTGGTTTCTCTGTACCAAGAAGGATCCATGTTGAC 129 Query 214 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCGGCCTCCC 273 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 130 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCAGCCTCCC 189 Query 274 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 249 Query 334 TGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 393 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 CGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 309 Query 394 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGACAT 453 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 310 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGATAT 369 Query 454 ATTCAGGTTGAACTATGCCTGAGGAAT 480 ||||||||||||||||||||||||||| Sbjct 370 ATTCAGGTTGAACTATGCCTGAGGAAT 396 > Ahg472998 jgi|Araly1|472998|fgenesh2_kg.1__2952__AT1G27970.1 Length=657 Score = 267 bits (144), Expect = 1e-70 Identities = 307/383 (80%), Gaps = 21/383 (5%) Strand=Plus/Plus Query 105 AGATGGATCCAGACGCTGT-TGCAAAGGCTTTCGTTGAGCACTACTACTCCACCTTCGAT 163 |||||||||| |||||||| | | ||||| ||||| || || ||||| ||||||||||| Sbjct 72 AGATGGATCCCGACGCTGTAT-CTAAGGCCTTCGTCGAACATTACTATTCCACCTTCGAC 130 Query 164 GCAAATCGTCCAGGGT-TGGTTTCTCTATACCAAGAAGGATCCATGTTGACCTTCGAAGG 222 | || || | ||| | | | ||| ||||| |||| || ||| | ||||||||||| Sbjct 131 ACCAACCG-CGTCGGTCTCGCTGGTCTCTACCAGGAAGCTTCTATGCTCACCTTCGAAGG 189 Query 223 CCAGAAGATCC-AGG-GCTCTCAGAA-CATCGTCGCTAAGCTCACCGGC-C-TCCCTTTC 277 || ||||||| ||| | || || || ||||||||||||||||||| | | |||| ||| Sbjct 190 TCAAAAGATCCAAGGAG-TC-CA-AAGCATCGTCGCTAAGCTCACC-TCTCTTCCC-TTC 244 Query 278 CAGCAGTGTAAGCA-CAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGGTGG 336 |||||||| ||||| | ||||| ||||||||||||||||||||||||||||||| || Sbjct 245 CAGCAGTGCAAGCATC-ACATCTCCACCGTCGATTGTCAGCCTTCTGGTCCCGCTTCCGG 303 Query 337 TATGCTCGTCTTT-GTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAAGT 395 ||||||||| ||| |||||||| || || |||||||| || ||| | ||| ||||||||| Sbjct 304 TATGCTCGT-TTTCGTCTCCGGTAACCTCCAGCTCGCCGGCGAAGAGCACACTCTCAAGT 362 Query 396 TCAGCCAGATGTTCCATTTGATATCGAATC-AG--GGAAACTACTACGTGTTCAATGACA 452 ||||||||||||| || ||||| ||| | | |||| || ||||||||||| || | Sbjct 363 TCAGCCAGATGTTTCACTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATA 422 Query 453 TATTCAGGTTGAACTATGCCTGA 475 |||||||||||||||| |||||| Sbjct 423 TATTCAGGTTGAACTACGCCTGA 445 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28554064833 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5