BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27350.1 Length=497 Score E Sequences producing significant alignments: (Bits) Value Ahg472931 jgi|Araly1|472931|fgenesh2_kg.1__2885__AT1G27350.1 560 3e-159 Ahg472929 jgi|Araly1|472929|fgenesh2_kg.1__2883__AT1G27330.1 392 1e-108 > Ahg472931 jgi|Araly1|472931|fgenesh2_kg.1__2885__AT1G27350.1 Length=385 Score = 560 bits (303), Expect = 3e-159 Identities = 361/388 (93%), Gaps = 7/388 (2%) Strand=Plus/Plus Query 63 CTCGCGATCGTCATTTCAATTTCTAATTAGCTTTCCTGGTGTTTCTTCTCCGGCGTAATC 122 ||||||||||||||||||||| || ||| || ||||| |||||||||||||||||||||| Sbjct 1 CTCGCGATCGTCATTTCAATTCCTTATTCGC-TTCCTAGTGTTTCTTCTCCGGCGTAATC 59 Query 123 ATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGAAATTCGACAAAAACATTTTA 182 |||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 60 ATGACAACCTCAAAGCGACTCGCAGACAGGAAGATTGAGAAATTCGACAAGAACATTTTA 119 Query 183 AAGAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCAAGGATTATCCC-GTTGGTCC 241 || ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 120 AAAAGAGGTTTTGTTCCTGAGACCACCACCAAGAAGGGCAAGGATTA-CCCTGTTGGTCC 178 Query 242 CATCCTTCTTGGCTTCTTTGTCTTTGTTGTCATTGGATCATCTCTCTTTCAGATCATTAG 301 |||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 179 CATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCATCTCTCTTCCAGATCATCAG 238 Query 302 GACTGCAACTAGCGGAGGCATGGCATAAACCAAA-ACACAGTCAAGCTAGAAGAAGCAGT 360 ||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |||| Sbjct 239 GACCGCAACTAGCGGAGGCATGGCATAAACCAAATA-ACAGTCAAGCTAGAAGAAACAGT 297 Query 361 TTTCAAAATGTAGAATCTTCTTCTG--TCTCCTTTCTTTTTCTCTCCTTATACTGTAGAA 418 |||||||||| |||||||||||||| |||||| |||||| ||||||||||||||||||| Sbjct 298 TTTCAAAATGGAGAATCTTCTTCTGTCTCTCCTCTCTTTTACTCTCCTTATACTGTAGAA 357 Query 419 TGTGTCAACTTTCTGTTTACTATATCAT 446 |||||||||||||||||||||||||||| Sbjct 358 TGTGTCAACTTTCTGTTTACTATATCAT 385 > Ahg472929 jgi|Araly1|472929|fgenesh2_kg.1__2883__AT1G27330.1 Length=365 Score = 392 bits (212), Expect = 1e-108 Identities = 326/378 (86%), Gaps = 19/378 (5%) Strand=Plus/Plus Query 103 GTTTCTTCTCCGGCGTAATCATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGA 162 ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2 GTTTCTTCTCCGGTGTAATCATGACAACTTCAAAAAGACTCGCAGACAGGAAGATTGAGA 61 Query 163 AATTCGACAAAAACATTTTAAAGAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCA 222 |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 62 AATTCGACAAGAACATATTAAAAAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCA 121 Query 223 AGGATTATCCC-GTTGGTCCCATCCTTCTTGGCTTCTTTGTCTTTGTTGTCATTGGATCA 281 ||||||| ||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 122 AGGATTA-CCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCA 180 Query 282 TCTCTCTTTCAGATCATTAGGACTGCAACTAGCGGAGGCATGGCATAAACCAAAACACAG 341 |||||||| |||||||| ||||| |||||||| ||||| ||||| |||||| | |||| Sbjct 181 TCTCTCTTCCAGATCATCAGGACCGCAACTAGTGGAGGAATGGCTTAAACCCTATCACAT 240 Query 342 TCAAGCTAGAAGAA-GCAGTTTTCAAAATGTAGAATCTTCTTCTGTCT--CCTTTCTTTT 398 ||||||| ||||| ||| || ||||| | | ||| |||||| || ||| ||||| Sbjct 241 TCAAGCTGGAAGATCGCAATTCTCAAATTCT----TCT-CTTCTGACTTGCCT--CTTTT 293 Query 399 TCTCTCCTTATACTGTAGAATGTGTCAACTTTCTGTTTACTATATCATGTAATGAAGATT 458 || | ||||||||||||||||| | | |||||||||| |||| ||||| ||||||| | Sbjct 294 TC-C-CCTTATACTGTAGAATGCGACTACTTTCTGTTGACTA---CATGTTATGAAGAAT 348 Query 459 ATTTGAGT-TTTTTATAA 475 ||||||| ||||| ||| Sbjct 349 -TTTGAGTCTTTTTCTAA 365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18047593597 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5